Ggra6191.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6191.t1
Unique NameGgra6191.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:931692..932693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002674370.1
PFAMsC2,Copine,WW
Max annot lvl2759|Eukaryota
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006971,GO:0007049,GO:0008150,GO:0008152,GO:0008289,GO:0009266,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010646,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0022402,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031156,GO:0031157,GO:0032101,GO:0032104,GO:0032107,GO:0032502,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0043052,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046956,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051301,GO:0051592,GO:0051703,GO:0051704,GO:0052128,GO:0060176,GO:0060359,GO:0061640,GO:0065007,GO:0065008,GO:0071704,GO:0080134,GO:0080135,GO:0090702,GO:0099120,GO:0140096,GO:1901564,GO:1901698,GO:1903047
Evalue8.85e-12
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6191Ggra6191Gracilaria gracilis GNS1m malegenetig00000045_pilon 931692..932693 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1.stop1Ggra6191.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 931692..931694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1.CDS1Ggra6191.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 931692..932693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1.exon1Ggra6191.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 931692..932693 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1.start1Ggra6191.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 932691..932693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6191.t1Ggra6191.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 931692..932693 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MGLDAQFSHDSLLDEQQLSSIRLQYPKSSRLLLGTTANLQQPAFLKALET
RYPLEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETV
LYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQ
CALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLD
MASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQKRFQVMTRDLTAV
TAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRMLWWPSA
LGDGDNVIEVGRIVLVESVVSSMLLQFRLRVTQ*
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spliced messenger RNA

>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:931692..932693- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTGGACGCGCAGTTTTCGCACGACTCGTTGCTCGATGAGCAGCA
GCTCAGCTCCATTCGCCTGCAGTACCCCAAGAGCAGCCGCTTGCTGCTGG
GCACCACGGCCAATCTACAGCAGCCCGCCTTTCTCAAGGCGTTGGAAACG
CGCTACCCGTTGGAAGTGAGCGTGGAATGTCGCCAACTCAATGCGCCCTC
ACGACTGTTCCCGTTCCGTCAAGTGCGCCCGTTTGCCGTCTTCCTGTACA
GCGACGGCCCCAACGCGCCGTGGGAACTTATCGGCCGCACCGAGACCGTG
CTCTACGACGAGTACCCTCGCTTCGTCACCAAGCTCAAGGTGTGCTGTGC
CACCGAGCGCGACCGCCAAAAAATTCTGCGCGTGGAGGTGTTTGACAGGC
GCAACAAGAGCGAGCACATTGAGCACCAAACGTTCATCGGTGCCGCTCAA
TGCGCGCTGGAGGACATTATCGCAGAGCCTCTACTCAGAAAGGAAATGAA
AATGAGCGAGTCAAGAGTGATGAAACCGGGCCGCGTCATCATCTGCGCCG
ACGCAATTCGAGCGAGCGACAGATGCACACGATTGGTATTAAACCTGGAC
ATGGCTTCTGGAACAAAGAAAAACCACCGCGTGTTCTACGTGCTATCTAG
ACAACTGCAATCAGGAGATTACACGCCGGTGTACCGCTCTGAGGTTCTAA
CTCGCGAACAAAAACGCTTCCAGGTGATGACGCGCGACCTGACAGCAGTG
ACAGCCGGCGTGGATGATAAGCTATTACGGCTGGAACTGTATCAATTTAG
CAACCGAGGCGCGCACGTTCGACTGGGCTTTGTGAAGACTAGCATCGAAA
AGCTGAAGAACACGGAGCGACATCATCGCATGCTGTGGTGGCCGAGCGCA
CTTGGAGATGGCGACAACGTCATTGAAGTGGGCCGCATTGTGCTAGTAGA
GTCAGTGGTGAGTTCGATGCTGCTGCAATTCCGACTGCGTGTGACGCAGT
GA
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protein sequence of Ggra6191.t1

>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MGLDAQFSHDSLLDEQQLSSIRLQYPKSSRLLLGTTANLQQPAFLKALET
RYPLEVSVECRQLNAPSRLFPFRQVRPFAVFLYSDGPNAPWELIGRTETV
LYDEYPRFVTKLKVCCATERDRQKILRVEVFDRRNKSEHIEHQTFIGAAQ
CALEDIIAEPLLRKEMKMSESRVMKPGRVIICADAIRASDRCTRLVLNLD
MASGTKKNHRVFYVLSRQLQSGDYTPVYRSEVLTREQKRFQVMTRDLTAV
TAGVDDKLLRLELYQFSNRGAHVRLGFVKTSIEKLKNTERHHRMLWWPSA
LGDGDNVIEVGRIVLVESVVSSMLLQFRLRVTQ*
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mRNA from alignment at tig00000045_pilon:931692..932693-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:931692..932693- (Gracilaria gracilis GNS1m male)
ATGGGCTTGGACGCGCAGTTTTCGCACGACTCGTTGCTCGATGAGCAGCA
GCTCAGCTCCATTCGCCTGCAGTACCCCAAGAGCAGCCGCTTGCTGCTGG
GCACCACGGCCAATCTACAGCAGCCCGCCTTTCTCAAGGCGTTGGAAACG
CGCTACCCGTTGGAAGTGAGCGTGGAATGTCGCCAACTCAATGCGCCCTC
ACGACTGTTCCCGTTCCGTCAAGTGCGCCCGTTTGCCGTCTTCCTGTACA
GCGACGGCCCCAACGCGCCGTGGGAACTTATCGGCCGCACCGAGACCGTG
CTCTACGACGAGTACCCTCGCTTCGTCACCAAGCTCAAGGTGTGCTGTGC
CACCGAGCGCGACCGCCAAAAAATTCTGCGCGTGGAGGTGTTTGACAGGC
GCAACAAGAGCGAGCACATTGAGCACCAAACGTTCATCGGTGCCGCTCAA
TGCGCGCTGGAGGACATTATCGCAGAGCCTCTACTCAGAAAGGAAATGAA
AATGAGCGAGTCAAGAGTGATGAAACCGGGCCGCGTCATCATCTGCGCCG
ACGCAATTCGAGCGAGCGACAGATGCACACGATTGGTATTAAACCTGGAC
ATGGCTTCTGGAACAAAGAAAAACCACCGCGTGTTCTACGTGCTATCTAG
ACAACTGCAATCAGGAGATTACACGCCGGTGTACCGCTCTGAGGTTCTAA
CTCGCGAACAAAAACGCTTCCAGGTGATGACGCGCGACCTGACAGCAGTG
ACAGCCGGCGTGGATGATAAGCTATTACGGCTGGAACTGTATCAATTTAG
CAACCGAGGCGCGCACGTTCGACTGGGCTTTGTGAAGACTAGCATCGAAA
AGCTGAAGAACACGGAGCGACATCATCGCATGCTGTGGTGGCCGAGCGCA
CTTGGAGATGGCGACAACGTCATTGAAGTGGGCCGCATTGTGCTAGTAGA
GTCAGTGGTGAGTTCGATGCTGCTGCAATTCCGACTGCGTGTGACGCAGT
GA
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Coding sequence (CDS) from alignment at tig00000045_pilon:931692..932693-

>Ggra6191.t1 ID=Ggra6191.t1|Name=Ggra6191.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000045_pilon:931692..932693- (Gracilaria gracilis GNS1m male)
ATGGGCTTGGACGCGCAGTTTTCGCACGACTCGTTGCTCGATGAGCAGCA
GCTCAGCTCCATTCGCCTGCAGTACCCCAAGAGCAGCCGCTTGCTGCTGG
GCACCACGGCCAATCTACAGCAGCCCGCCTTTCTCAAGGCGTTGGAAACG
CGCTACCCGTTGGAAGTGAGCGTGGAATGTCGCCAACTCAATGCGCCCTC
ACGACTGTTCCCGTTCCGTCAAGTGCGCCCGTTTGCCGTCTTCCTGTACA
GCGACGGCCCCAACGCGCCGTGGGAACTTATCGGCCGCACCGAGACCGTG
CTCTACGACGAGTACCCTCGCTTCGTCACCAAGCTCAAGGTGTGCTGTGC
CACCGAGCGCGACCGCCAAAAAATTCTGCGCGTGGAGGTGTTTGACAGGC
GCAACAAGAGCGAGCACATTGAGCACCAAACGTTCATCGGTGCCGCTCAA
TGCGCGCTGGAGGACATTATCGCAGAGCCTCTACTCAGAAAGGAAATGAA
AATGAGCGAGTCAAGAGTGATGAAACCGGGCCGCGTCATCATCTGCGCCG
ACGCAATTCGAGCGAGCGACAGATGCACACGATTGGTATTAAACCTGGAC
ATGGCTTCTGGAACAAAGAAAAACCACCGCGTGTTCTACGTGCTATCTAG
ACAACTGCAATCAGGAGATTACACGCCGGTGTACCGCTCTGAGGTTCTAA
CTCGCGAACAAAAACGCTTCCAGGTGATGACGCGCGACCTGACAGCAGTG
ACAGCCGGCGTGGATGATAAGCTATTACGGCTGGAACTGTATCAATTTAG
CAACCGAGGCGCGCACGTTCGACTGGGCTTTGTGAAGACTAGCATCGAAA
AGCTGAAGAACACGGAGCGACATCATCGCATGCTGTGGTGGCCGAGCGCA
CTTGGAGATGGCGACAACGTCATTGAAGTGGGCCGCATTGTGCTAGTAGA
GTCAGTGGTGAGTTCGATGCTGCTGCAATTCCGACTGCGTGTGACGCAGT
GA
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