Ggra6162.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6162.t1
Unique NameGgra6162.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:719186..719611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005648203.1
PFAMsZeta_toxin
Max annot lvl33090|Viridiplantae
Evalue1.18e-20
EggNOG OGs28HDN@1|root,2QPRV@2759|Eukaryota,37R4U@33090|Viridiplantae
Descriptionsuperfamily protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6162Ggra6162Gracilaria gracilis GNS1m malegenetig00000045_pilon 719186..719611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6162.t1.stop1Ggra6162.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 719186..719188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6162.t1.CDS1Ggra6162.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 719186..719611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6162.t1.exon1Ggra6162.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 719186..719611 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6162.t1.start1Ggra6162.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 719609..719611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6162.t1Ggra6162.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 719186..719611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6162.t1 ID=Ggra6162.t1|Name=Ggra6162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=142bp
MLRETDYEYKRGPGYVEKENGDVSEIYWVRSKKRPQPVAPYRLELVGVTT
DQEIAVMRGIVRRMATGRGVPVPNQLKSDALFSKHFETFIDWVDSAYLFD
ATLHSDSEEGPPTSSDQLIAITSGLLLKNSASRTNSSRGVR*
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spliced messenger RNA

>Ggra6162.t1 ID=Ggra6162.t1|Name=Ggra6162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000045_pilon:719186..719611- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGAAACGGATTACGAATATAAGCGCGGACCTGGTTATGTCGA
AAAGGAAAATGGTGACGTCAGCGAAATCTACTGGGTACGTTCCAAGAAGA
GACCTCAACCGGTAGCGCCTTATCGTTTGGAACTTGTGGGCGTCACGACA
GACCAGGAGATTGCGGTTATGCGCGGAATTGTCCGTAGGATGGCCACAGG
AAGGGGCGTTCCTGTTCCCAATCAGTTGAAGTCCGACGCACTTTTCTCAA
AGCATTTTGAAACATTCATTGACTGGGTAGACTCTGCTTATTTGTTTGAC
GCTACTCTCCACTCAGACTCGGAAGAAGGCCCCCCGACCAGCTCGGATCA
GTTAATTGCTATCACGTCTGGACTGCTTCTCAAAAACTCTGCCTCTAGAA
CCAACTCTTCGAGAGGAGTCCGCTGA
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protein sequence of Ggra6162.t1

>Ggra6162.t1 ID=Ggra6162.t1|Name=Ggra6162.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MLRETDYEYKRGPGYVEKENGDVSEIYWVRSKKRPQPVAPYRLELVGVTT
DQEIAVMRGIVRRMATGRGVPVPNQLKSDALFSKHFETFIDWVDSAYLFD
ATLHSDSEEGPPTSSDQLIAITSGLLLKNSASRTNSSRGVR*
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mRNA from alignment at tig00000045_pilon:719186..719611-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6162.t1 ID=Ggra6162.t1|Name=Ggra6162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000045_pilon:719186..719611- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGAAACGGATTACGAATATAAGCGCGGACCTGGTTATGTCGA
AAAGGAAAATGGTGACGTCAGCGAAATCTACTGGGTACGTTCCAAGAAGA
GACCTCAACCGGTAGCGCCTTATCGTTTGGAACTTGTGGGCGTCACGACA
GACCAGGAGATTGCGGTTATGCGCGGAATTGTCCGTAGGATGGCCACAGG
AAGGGGCGTTCCTGTTCCCAATCAGTTGAAGTCCGACGCACTTTTCTCAA
AGCATTTTGAAACATTCATTGACTGGGTAGACTCTGCTTATTTGTTTGAC
GCTACTCTCCACTCAGACTCGGAAGAAGGCCCCCCGACCAGCTCGGATCA
GTTAATTGCTATCACGTCTGGACTGCTTCTCAAAAACTCTGCCTCTAGAA
CCAACTCTTCGAGAGGAGTCCGCTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:719186..719611-

>Ggra6162.t1 ID=Ggra6162.t1|Name=Ggra6162.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00000045_pilon:719186..719611- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGAAACGGATTACGAATATAAGCGCGGACCTGGTTATGTCGA
AAAGGAAAATGGTGACGTCAGCGAAATCTACTGGGTACGTTCCAAGAAGA
GACCTCAACCGGTAGCGCCTTATCGTTTGGAACTTGTGGGCGTCACGACA
GACCAGGAGATTGCGGTTATGCGCGGAATTGTCCGTAGGATGGCCACAGG
AAGGGGCGTTCCTGTTCCCAATCAGTTGAAGTCCGACGCACTTTTCTCAA
AGCATTTTGAAACATTCATTGACTGGGTAGACTCTGCTTATTTGTTTGAC
GCTACTCTCCACTCAGACTCGGAAGAAGGCCCCCCGACCAGCTCGGATCA
GTTAATTGCTATCACGTCTGGACTGCTTCTCAAAAACTCTGCCTCTAGAA
CCAACTCTTCGAGAGGAGTCCGCTGA
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