Ggra6027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6027.t1
Unique Name	Ggra6027.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:164281..165279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004293398.1
PFAMs	AMPK1_CBM,AMPKBI
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07199
KEGG Pathway	ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Evalue	3.8e-24
EggNOG OGs	KOG1616@1\|root,KOG1616@2759\|Eukaryota,37RTB@33090\|Viridiplantae,3GCN6@35493\|Streptophyta,4JHU7@91835\|fabids
Description	SNF1-related protein kinase regulatory subunit
COG category	G
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6027	Ggra6027	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 164281..165279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6027.t1.start1	Ggra6027.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 164281..164283 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6027.t1.CDS1	Ggra6027.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 164281..165279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6027.t1.exon1	Ggra6027.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 164281..165279 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6027.t1.stop1	Ggra6027.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 165277..165279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6027.t1	Ggra6027.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 164281..165279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:164281..165279+
coding sequence from alignment at tig00000045_pilon:164281..165279+

mRNA sequence

>Ggra6027.t1 ID=Ggra6027.t1|Name=Ggra6027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MGASSSRHYAPLAVDRPRASPCSSLGSNADACSTSCVDTHLPACNHQQPS
SVCKKHTAVACGTHCSDAPIGPPDSRLTPRHDPCNDLVWSASAATTASDD
AFDEDDLVPTMFQWNFGGCEVYVAGDWDDWAKKTLMSKNGQQHIALVYIP
CGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNSVTVARPNPQFDMSSPLS
DTPPLSPVSSYNQTPTSDFPNDAPQLPPFLEERYLKPLPDDMSPDIAIAA
QTAAPAWCAAEQPPCQRSLRPFFSHVSVDHLYIARTPESDPVRCFSHNAR
HYGKIINTVFVTSADQQGDKGTSDSFHEGHPS*

spliced messenger RNA

>Ggra6027.t1 ID=Ggra6027.t1|Name=Ggra6027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000045_pilon:164281..165279+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCTTCCTCAAGTCGCCACTATGCCCCCCTAGCAGTCGACCGCCC
CCGTGCCTCGCCCTGTTCCTCCCTTGGAAGCAACGCAGACGCCTGCTCTA
CTTCCTGCGTCGACACTCACCTTCCAGCGTGCAATCATCAGCAGCCCTCT
TCCGTGTGCAAAAAACACACCGCGGTCGCCTGCGGAACTCACTGCTCAGA
CGCCCCAATTGGCCCACCCGATTCCCGCCTCACCCCACGACACGACCCAT
GCAATGATCTAGTTTGGTCAGCTTCCGCCGCCACCACAGCCTCCGATGAC
GCATTTGACGAGGACGACCTTGTTCCCACTATGTTTCAGTGGAACTTTGG
CGGCTGCGAAGTGTATGTGGCTGGCGACTGGGATGACTGGGCTAAGAAAA
CCCTCATGAGCAAGAACGGCCAGCAACACATTGCCCTTGTATATATCCCT
TGTGGCCAGCATCAGTTCAAGTATTATGTTGATCACACTTGGCAATGCGC
CCCTAATCTTCCAACATGCACTGACTCTCTAGGCAACAAAAACAACTCAG
TCACAGTGGCACGGCCAAACCCTCAGTTCGACATGAGTTCCCCGCTTTCC
GACACTCCACCGCTGTCTCCCGTTTCGTCTTACAATCAAACTCCAACGAG
TGACTTTCCAAACGATGCCCCTCAGCTTCCACCATTCTTGGAGGAGCGTT
ATCTCAAGCCACTCCCAGATGACATGAGTCCTGATATTGCTATAGCGGCA
CAGACTGCCGCCCCTGCATGGTGTGCTGCGGAACAGCCTCCATGCCAGCG
CTCCTTGCGACCTTTCTTCTCCCATGTGAGTGTAGACCATCTCTACATTG
CGCGAACTCCCGAATCTGATCCCGTGCGCTGTTTCTCTCACAACGCTCGG
CATTATGGAAAGATAATCAATACTGTGTTTGTAACCTCCGCAGATCAACA
GGGCGACAAAGGTACTTCTGACAGCTTTCATGAAGGTCATCCTTCGTAA

protein sequence of Ggra6027.t1

>Ggra6027.t1 ID=Ggra6027.t1|Name=Ggra6027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MGASSSRHYAPLAVDRPRASPCSSLGSNADACSTSCVDTHLPACNHQQPS
SVCKKHTAVACGTHCSDAPIGPPDSRLTPRHDPCNDLVWSASAATTASDD
AFDEDDLVPTMFQWNFGGCEVYVAGDWDDWAKKTLMSKNGQQHIALVYIP
CGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNSVTVARPNPQFDMSSPLS
DTPPLSPVSSYNQTPTSDFPNDAPQLPPFLEERYLKPLPDDMSPDIAIAA
QTAAPAWCAAEQPPCQRSLRPFFSHVSVDHLYIARTPESDPVRCFSHNAR
HYGKIINTVFVTSADQQGDKGTSDSFHEGHPS*

mRNA from alignment at tig00000045_pilon:164281..165279+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6027.t1 ID=Ggra6027.t1|Name=Ggra6027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000045_pilon:164281..165279+ (Gracilaria gracilis GNS1m male)
ATGGGCGCTTCCTCAAGTCGCCACTATGCCCCCCTAGCAGTCGACCGCCC
CCGTGCCTCGCCCTGTTCCTCCCTTGGAAGCAACGCAGACGCCTGCTCTA
CTTCCTGCGTCGACACTCACCTTCCAGCGTGCAATCATCAGCAGCCCTCT
TCCGTGTGCAAAAAACACACCGCGGTCGCCTGCGGAACTCACTGCTCAGA
CGCCCCAATTGGCCCACCCGATTCCCGCCTCACCCCACGACACGACCCAT
GCAATGATCTAGTTTGGTCAGCTTCCGCCGCCACCACAGCCTCCGATGAC
GCATTTGACGAGGACGACCTTGTTCCCACTATGTTTCAGTGGAACTTTGG
CGGCTGCGAAGTGTATGTGGCTGGCGACTGGGATGACTGGGCTAAGAAAA
CCCTCATGAGCAAGAACGGCCAGCAACACATTGCCCTTGTATATATCCCT
TGTGGCCAGCATCAGTTCAAGTATTATGTTGATCACACTTGGCAATGCGC
CCCTAATCTTCCAACATGCACTGACTCTCTAGGCAACAAAAACAACTCAG
TCACAGTGGCACGGCCAAACCCTCAGTTCGACATGAGTTCCCCGCTTTCC
GACACTCCACCGCTGTCTCCCGTTTCGTCTTACAATCAAACTCCAACGAG
TGACTTTCCAAACGATGCCCCTCAGCTTCCACCATTCTTGGAGGAGCGTT
ATCTCAAGCCACTCCCAGATGACATGAGTCCTGATATTGCTATAGCGGCA
CAGACTGCCGCCCCTGCATGGTGTGCTGCGGAACAGCCTCCATGCCAGCG
CTCCTTGCGACCTTTCTTCTCCCATGTGAGTGTAGACCATCTCTACATTG
CGCGAACTCCCGAATCTGATCCCGTGCGCTGTTTCTCTCACAACGCTCGG
CATTATGGAAAGATAATCAATACTGTGTTTGTAACCTCCGCAGATCAACA
GGGCGACAAAGGTACTTCTGACAGCTTTCATGAAGGTCATCCTTCGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:164281..165279+

>Ggra6027.t1 ID=Ggra6027.t1|Name=Ggra6027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000045_pilon:164281..165279+ (Gracilaria gracilis GNS1m male)
ATGGGCGCTTCCTCAAGTCGCCACTATGCCCCCCTAGCAGTCGACCGCCC
CCGTGCCTCGCCCTGTTCCTCCCTTGGAAGCAACGCAGACGCCTGCTCTA
CTTCCTGCGTCGACACTCACCTTCCAGCGTGCAATCATCAGCAGCCCTCT
TCCGTGTGCAAAAAACACACCGCGGTCGCCTGCGGAACTCACTGCTCAGA
CGCCCCAATTGGCCCACCCGATTCCCGCCTCACCCCACGACACGACCCAT
GCAATGATCTAGTTTGGTCAGCTTCCGCCGCCACCACAGCCTCCGATGAC
GCATTTGACGAGGACGACCTTGTTCCCACTATGTTTCAGTGGAACTTTGG
CGGCTGCGAAGTGTATGTGGCTGGCGACTGGGATGACTGGGCTAAGAAAA
CCCTCATGAGCAAGAACGGCCAGCAACACATTGCCCTTGTATATATCCCT
TGTGGCCAGCATCAGTTCAAGTATTATGTTGATCACACTTGGCAATGCGC
CCCTAATCTTCCAACATGCACTGACTCTCTAGGCAACAAAAACAACTCAG
TCACAGTGGCACGGCCAAACCCTCAGTTCGACATGAGTTCCCCGCTTTCC
GACACTCCACCGCTGTCTCCCGTTTCGTCTTACAATCAAACTCCAACGAG
TGACTTTCCAAACGATGCCCCTCAGCTTCCACCATTCTTGGAGGAGCGTT
ATCTCAAGCCACTCCCAGATGACATGAGTCCTGATATTGCTATAGCGGCA
CAGACTGCCGCCCCTGCATGGTGTGCTGCGGAACAGCCTCCATGCCAGCG
CTCCTTGCGACCTTTCTTCTCCCATGTGAGTGTAGACCATCTCTACATTG
CGCGAACTCCCGAATCTGATCCCGTGCGCTGTTTCTCTCACAACGCTCGG
CATTATGGAAAGATAATCAATACTGTGTTTGTAACCTCCGCAGATCAACA
GGGCGACAAAGGTACTTCTGACAGCTTTCATGAAGGTCATCCTTCGTAA