Ggra6125.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6125.t1
Unique NameGgra6125.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Homology
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A2V3IG60 (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG60_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 6.510e-58
Identity = 114/197 (57.87%), Postives = 135/197 (68.53%), Query Frame = 0
Query:    1 MSSRPAFMTPSTVAFNRFRPAQTC-RNRSASRVAIRRLRATATDPERPKNVQ--ASDASPSEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALAEEAVTPLEPQFEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            M  + AF   S V+FNR R +QTC R  + +RVA+RR RATA DPERPKN+Q    D  P  P      XXXXX                             + QFE +VPGKIQLDE+ +AKQR +LE+YSR+LR+KR+EEEREA+R+FG+VPYAETLNGRLAMFF+VTGLLTEYWTGYTLPEQVELMLRTLGI+
Sbjct:    1 MHPQLAFANSSNVSFNRIRRSQTCIRPTTTTRVAVRRWRATAADPERPKNIQPPTPDPLPEPPAQQESQXXXXXVP---------------------------DAQFEQQVPGKIQLDELTIAKQRTVLEEYSRELRQKRLEEEREAARIFGWVPYAETLNGRLAMFFLVTGLLTEYWTGYTLPEQVELMLRTLGII 170          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A1X6NQV6 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQV6_PORUM)

HSP 1 Score: 101 bits (251), Expect = 1.270e-23
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 0
Query:  104 FEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            +E   PGK+ L+EIQLA+Q+K L     +   +R E ER   R+FG+VP AE LNGRLAMFF VTGLLTE WTG T+PEQVEL+ RTLG +
Sbjct:   84 YEGAPPGKVVLNEIQLAEQKKALNQLGDRWEAERKEVERTEKRIFGWVPGAERLNGRLAMFFFVTGLLTELWTGDTIPEQVELLARTLGFI 174          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A836CEG8 (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.200e-23
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 0
Query:  105 EDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            +D VPGKI +D+  LA+Q+  LE Y+RQLR +R++ E E +RL G+ P AE  NGR AMFFIV G+LTEYWTG ++P+QVE M   +G+L
Sbjct:   70 DDNVPGKIVVDDATLAQQQIDLEKYARQLRRQRLDREAEEARLLGWTPAAEINNGRAAMFFIVVGILTEYWTGQSMPQQVETMASVMGLL 159          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A7V5I693 (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I693_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.380e-21
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 0
Query:  106 DEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            + VPG+ +L  ++LA+QR+ L   + + +  R+ +E E+ R+FGF   AE +NGR AMFF VTG+LTEYWTG T+P+Q+EL+LR LGI+
Sbjct:   54 ERVPGRYKLSAVELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 142          
BLAST of Ggra6125.t1 vs. uniprot
Match: M1V653 (Similar to high light inducible protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V653_CYAM1)

HSP 1 Score: 95.5 bits (236), Expect = 4.660e-21
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0
Query:  106 DEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            + VPG+ +L  I+LA+QR+ L   + + +  R+ +E E+ R+FGF   AE +NGR AMFF VTG+LTEYWTG T+P+Q+EL+LR LGI+
Sbjct:  117 ERVPGRYKLSAIELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 205          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A5J4YWB8 (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWB8_PORPP)

HSP 1 Score: 91.7 bits (226), Expect = 5.180e-20
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 0
Query:  104 FEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            +E   PG  +L   +LA+Q+K+L   S + + +R++ E E SRLFG    AE LNGR+AMFF+ TGLLTEYWTG  +PEQVE + RTLG++
Sbjct:   74 YEGPGPGMRELTPAELAEQKKVLVALSEEWKAERMDREFEQSRLFGLTRRAEILNGRVAMFFLATGLLTEYWTGENIPEQVETLFRTLGLI 164          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A7J7IMA7 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA7_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 3.920e-19
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0
Query:  106 DEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            +  PG+ +L   +LA+QR+ +   + + + +RI  E EA R+FGF   AE +NGR AMFF  TG+LTEYWTG T+P+Q+EL+LR LG L
Sbjct:  134 ERAPGRYKLSAAELAEQRRAIRAVAERYKAERIAREAEARRVFGFCRNAEIINGRTAMFFFATGMLTEYWTGQTMPQQIELLLRILGFL 222          
BLAST of Ggra6125.t1 vs. uniprot
Match: M2Y7Z7 (High light inducible protein isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y7Z7_GALSU)

HSP 1 Score: 89.7 bits (221), Expect = 4.210e-19
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   95 EAVTPLEPQFEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLG 192
            EA   LE   E   P        +L +Q + L++ +   RE+R+++EREA+R FGF P+AETLNGRLAM F++ GLLTEYWTG+T+ +Q+  +L  LG
Sbjct:   81 EAAEHLETNLEQNQPIDFSFTPEELREQARKLDELAEVWREERLQQEREANRKFGFTPFAETLNGRLAMSFLLIGLLTEYWTGFTIVDQIAYILEILG 178          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A7S2A473 (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A473_TRICV)

HSP 1 Score: 86.7 bits (213), Expect = 8.500e-19
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0
Query:  106 DEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            + VPGKI L+E++LA Q   L +   + R++R+++E + +R+ G+   AET NGR AMFF+V GLLTEYWTG T+P Q+E MLR  G +
Sbjct:    9 ENVPGKIVLNEVELAAQVAALGNLEEKWRKERMQKEYDEARILGWTARAETYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFI 97          
BLAST of Ggra6125.t1 vs. uniprot
Match: A0A7S2P2S9 (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P2S9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.290e-18
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0
Query:  101 EPQFEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGFVPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL 194
            E    + VPGK+ ++EI LAKQ   L     + R++R+ +E E   L G+ P AE  NGR AMFF+V GLLTEYWTG T+P Q+E MLR  G +
Sbjct:   59 EDWITENVPGKVVMNEIDLAKQVSALNQLEEKWRKERVYKEYEDKALLGWTPQAEMYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFI 152          
The following BLAST results are available for this feature:
BLAST of Ggra6125.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IG606.510e-5857.87Light-harvesting complex-like protein OHP2, chloro... [more]
A0A1X6NQV61.270e-2359.34Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A836CEG84.200e-2355.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5I6931.380e-2150.56Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
M1V6534.660e-2151.69Similar to high light inducible protein n=1 Tax=Cy... [more]
A0A5J4YWB85.180e-2051.65Light-harvesting complex-like protein OHP2, chloro... [more]
A0A7J7IMA73.920e-1949.44Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M2Y7Z74.210e-1946.94High light inducible protein isoform 2 n=2 Tax=Gal... [more]
A0A7S2A4738.500e-1949.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2P2S91.290e-1848.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..105
NoneNo IPR availablePANTHERPTHR33401:SF1LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 15..193
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 15..193
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 147..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:610359..610943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6125.t1Ggra6125.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 610359..610943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6125.t1 ID=Ggra6125.t1|Name=Ggra6125.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MSSRPAFMTPSTVAFNRFRPAQTCRNRSASRVAIRRLRATATDPERPKNV
QASDASPSEPVSPPEPIAQPEAIAQPEAIAQPEETAQGEAALAEEAVTPL
EPQFEDEVPGKIQLDEIQLAKQRKILEDYSRQLREKRIEEEREASRLFGF
VPYAETLNGRLAMFFIVTGLLTEYWTGYTLPEQVELMLRTLGIL*
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