Ggra8425.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8425.t1
Unique NameGgra8425.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:595849..596390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog247490.KSU1_C0681
Preferred nameXK27_09985
PFAMsCupin_2,DUF1232,tRNA-synt_1g
Max annot lvl2|Bacteria
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Evalue1.17e-18
EggNOG OGsCOG0662@1|root,COG3339@1|root,COG0662@2|Bacteria,COG3339@2|Bacteria
EC6.1.1.10
DescriptionProtein of unknown function (DUF1232)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8425Ggra8425Gracilaria gracilis GNS1m malegenetig00000041_pilon 595849..596390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1Ggra8425.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 595849..596390 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1.start1Ggra8425.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 595849..595851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1.CDS1Ggra8425.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 595849..596123 +
Ggra8425.t1.CDS2Ggra8425.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 596210..596390 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1.exon1Ggra8425.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 595849..596123 +
Ggra8425.t1.exon2Ggra8425.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 596210..596390 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1.intron1Ggra8425.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 596124..596209 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8425.t1.stop1Ggra8425.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 596388..596390 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8425.t1 ID=Ggra8425.t1|Name=Ggra8425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MRETSIMRQPVAIVTFFMGLVMGLYISRVLSASPRGFDHTDSPFHISTVP
FSGVSHNPEIQKRVLARYFQMPHVTQVAKAYIQPGQIASENWHDDMVEMF
LFVAGHGVLNLDGTNYTVSDGSVALVFPPTKHTIFNTASEPLELFTIASV
P*
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spliced messenger RNA

>Ggra8425.t1 ID=Ggra8425.t1|Name=Ggra8425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000041_pilon:595849..596390+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAGACTTCTATCATGAGACAACCTGTGGCGATTGTCACCTTCTT
CATGGGGCTGGTCATGGGCCTCTACATCAGCCGCGTTCTGTCTGCGTCTC
CCCGCGGCTTCGATCATACTGATTCGCCGTTCCACATTTCTACCGTGCCG
TTCTCGGGCGTGTCGCACAATCCGGAGATACAGAAGAGAGTGCTGGCCAG
ATACTTTCAAATGCCGCATGTGACGCAGGTTGCGAAGGCGTACATTCAAC
CGGGGCAGATAGCGTCTGAAAACTGGCATGATGATATGGTTGAAATGTTC
TTGTTTGTTGCAGGTCATGGCGTGCTAAACCTGGATGGAACCAATTATAC
TGTGTCTGATGGCTCGGTTGCATTGGTGTTCCCACCCACCAAACACACCA
TCTTCAACACCGCCTCCGAGCCGTTGGAGCTCTTCACAATAGCGTCTGTA
CCGTGA
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protein sequence of Ggra8425.t1

>Ggra8425.t1 ID=Ggra8425.t1|Name=Ggra8425.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MRETSIMRQPVAIVTFFMGLVMGLYISRVLSASPRGFDHTDSPFHISTVP
FSGVSHNPEIQKRVLARYFQMPHVTQVAKAYIQPGQIASENWHDDMVEMF
LFVAGHGVLNLDGTNYTVSDGSVALVFPPTKHTIFNTASEPLELFTIASV
P*
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mRNA from alignment at tig00000041_pilon:595849..596390+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8425.t1 ID=Ggra8425.t1|Name=Ggra8425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=542bp|location=Sequence derived from alignment at tig00000041_pilon:595849..596390+ (Gracilaria gracilis GNS1m male)
ATGCGGGAGACTTCTATCATGAGACAACCTGTGGCGATTGTCACCTTCTT
CATGGGGCTGGTCATGGGCCTCTACATCAGCCGCGTTCTGTCTGCGTCTC
CCCGCGGCTTCGATCATACTGATTCGCCGTTCCACATTTCTACCGTGCCG
TTCTCGGGCGTGTCGCACAATCCGGAGATACAGAAGAGAGTGCTGGCCAG
ATACTTTCAAATGCCGCATGTGACGCAGGTTGCGAAGGCGTACATTCAAC
CGGGGCAGATAGCGTCTGAAAACTGGTGCGTCAACTCCATCGTTTTGTTA
ATGTTGTCTTTCGAGCTGCGGTGCTGGCTGGTACACTAACTGTGCGTTGT
GTGTTTAACAGGCATGATGATATGGTTGAAATGTTCTTGTTTGTTGCAGG
TCATGGCGTGCTAAACCTGGATGGAACCAATTATACTGTGTCTGATGGCT
CGGTTGCATTGGTGTTCCCACCCACCAAACACACCATCTTCAACACCGCC
TCCGAGCCGTTGGAGCTCTTCACAATAGCGTCTGTACCGTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:595849..596390+

>Ggra8425.t1 ID=Ggra8425.t1|Name=Ggra8425.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000041_pilon:595849..596390+ (Gracilaria gracilis GNS1m male)
ATGCGGGAGACTTCTATCATGAGACAACCTGTGGCGATTGTCACCTTCTT
CATGGGGCTGGTCATGGGCCTCTACATCAGCCGCGTTCTGTCTGCGTCTC
CCCGCGGCTTCGATCATACTGATTCGCCGTTCCACATTTCTACCGTGCCG
TTCTCGGGCGTGTCGCACAATCCGGAGATACAGAAGAGAGTGCTGGCCAG
ATACTTTCAAATGCCGCATGTGACGCAGGTTGCGAAGGCGTACATTCAAC
CGGGGCAGATAGCGTCTGAAAACTGGCATGATGATATGGTTGAAATGTTC
TTGTTTGTTGCAGGTCATGGCGTGCTAAACCTGGATGGAACCAATTATAC
TGTGTCTGATGGCTCGGTTGCATTGGTGTTCCCACCCACCAAACACACCA
TCTTCAACACCGCCTCCGAGCCGTTGGAGCTCTTCACAATAGCGTCTGTA
CCGTGA
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