Ggra655.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra655.t1
Unique NameGgra655.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000947_piloncontigtig00000947_pilon:26514..27542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra655Ggra655Gracilaria gracilis GNS1m malegenetig00000947_pilon 26514..27542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1Ggra655.t1Gracilaria gracilis GNS1m malepolypeptidetig00000947_pilon 26514..27542 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1.stop1Ggra655.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000947_pilon 26514..26516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1.CDS1Ggra655.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000947_pilon 26514..26577 -
Ggra655.t1.CDS2Ggra655.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000947_pilon 26658..26814 -
Ggra655.t1.CDS3Ggra655.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000947_pilon 27533..27542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1.exon1Ggra655.t1.exon1Gracilaria gracilis GNS1m maleexontig00000947_pilon 26514..26577 -
Ggra655.t1.exon2Ggra655.t1.exon2Gracilaria gracilis GNS1m maleexontig00000947_pilon 26658..26814 -
Ggra655.t1.exon3Ggra655.t1.exon3Gracilaria gracilis GNS1m maleexontig00000947_pilon 27533..27542 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1.intron1Ggra655.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000947_pilon 26578..26657 -
Ggra655.t1.intron2Ggra655.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000947_pilon 26815..27532 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra655.t1.start1Ggra655.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000947_pilon 27540..27542 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra655.t1 ID=Ggra655.t1|Name=Ggra655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=77bp
MEDNAEVVAHVRTKGTNIDRTADLAPRRASVRPKRAIVIVSATCPDEKGT
RVVLKSLRTRLLRQFADSRIHTPPRS*
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spliced messenger RNA

>Ggra655.t1 ID=Ggra655.t1|Name=Ggra655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00000947_pilon:26514..27542- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACAATGCGGAAGTTGTTGCCCATGTGCGAACAAAAGGAACGAA
TATTGATCGCACAGCAGACCTGGCACCCAGAAGAGCTTCTGTTCGTCCTA
AACGAGCGATCGTAATTGTCTCAGCAACTTGCCCGGACGAGAAGGGTACA
AGAGTGGTCTTGAAAAGTCTTCGTACAAGATTGTTACGCCAGTTCGCAGA
CAGTCGCATTCATACGCCGCCGCGTTCTTAG
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protein sequence of Ggra655.t1

>Ggra655.t1 ID=Ggra655.t1|Name=Ggra655.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=77bp
MEDNAEVVAHVRTKGTNIDRTADLAPRRASVRPKRAIVIVSATCPDEKGT
RVVLKSLRTRLLRQFADSRIHTPPRS*
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mRNA from alignment at tig00000947_pilon:26514..27542-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra655.t1 ID=Ggra655.t1|Name=Ggra655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000947_pilon:26514..27542- (Gracilaria gracilis GNS1m male)
ATGGAGGACAGTAGGAACTAGAAGGTCAACTGCAAACTTTCGTCCAAGAA
CGTGCCGAACTGCGAGAAGCGTTGCTCCTGAAAGCGCCGCAAGAGGACCA
GATTTTGCTCCTGGAACCACTACATTGCTACTTCAAGTCTCAACACCTCC
TTGTGATCTACGCAACTGGGTGCAGCAATGGCTTCGCAACTACATTTTCA
GCGCAACGACAACGCTCACTGTTCCGATCTCGCTGCGAGTTGACGACAAA
GAGCAATGCCAAATTCTCTTCTATGCTTCCGACTCCGCAGTTCGGGGGCT
TCTTTTGATCAACGCAGCATCTGACGAAGAAGAATCGGACATCAGTAAGA
TGCACATCACTTCTTCTTCGCGCTTCGTAAGCGCTGGTGGTACATTTACC
TCAAGTTTACCTGGTGAGCGCCGCATTGTTCGAGATCTATATGATGCGGT
AGCGGAAAGGTTGGATAGTGTTCGTGTACTCTACAAACCGAAGTATATAC
GTCTTCGTAAACACGTTGATCGGCGCGGTAGCCCTCCCACGTATGCAACT
GTCTTAGTTTGCGAAGTGCGAAACGTATCTCGAACCCAGCTAGTTTCCTG
CCTTCGTGACTGGGCTTTTGAGATCCAGTTTAGCGCTTCTGGGGTTCTCT
TTGACGAAGCCTCGCTTCCGCCCATCTCAGTATCTTCATACCGAAATGGG
ATCAAAATACGTTCGTGCCGAGGTTCAGATGCGGAAGTTGTTGCCCATGT
GCGAACAAAAGGAACGAATATTGATCGCACAGCAGACCTGGCACCCAGAA
GAGCTTCTGTTCGTCCTAAACGAGCGATCGTAATTGTCTCAGCAACTTGC
CCGGACGAGAAGGGTACAAGAGTGGTCTTGAAAAGGTATTGTTATGAATC
TCAGGGGTCCATCACTACGTGTAGTTGTGGAGCAAACTGTGTCTTTGACC
ATTCCATTTATGTAGTCTTCGTACAAGATTGTTACGCCAGTTCGCAGACA
GTCGCATTCATACGCCGCCGCGTTCTTAG
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Coding sequence (CDS) from alignment at tig00000947_pilon:26514..27542-

>Ggra655.t1 ID=Ggra655.t1|Name=Ggra655.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=231bp|location=Sequence derived from alignment at tig00000947_pilon:26514..27542- (Gracilaria gracilis GNS1m male)
ATGGAGGACAATGCGGAAGTTGTTGCCCATGTGCGAACAAAAGGAACGAA
TATTGATCGCACAGCAGACCTGGCACCCAGAAGAGCTTCTGTTCGTCCTA
AACGAGCGATCGTAATTGTCTCAGCAACTTGCCCGGACGAGAAGGGTACA
AGAGTGGTCTTGAAAAGTCTTCGTACAAGATTGTTACGCCAGTTCGCAGA
CAGTCGCATTCATACGCCGCCGCGTTCTTAG
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