Ggra1102.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1102.t1
Unique NameGgra1102.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length365
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:50479..51573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX37799
PFAMsMethyltransf_11
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0080167
Evalue2.35e-57
EggNOG OGsCOG2226@1|root,2QPQG@2759|Eukaryota
Descriptionresponse to karrikin
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1102Ggra1102Gracilaria gracilis GNS1m malegenetig00000945_pilon 50479..51573 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1102.t1.stop1Ggra1102.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 50479..50481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1102.t1.CDS1Ggra1102.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 50479..51573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1102.t1.exon1Ggra1102.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 50479..51573 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1102.t1.start1Ggra1102.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 51571..51573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1102.t1Ggra1102.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 50479..51573 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1102.t1 ID=Ggra1102.t1|Name=Ggra1102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=365bp
MRAAVVAASFVPALPLARAACAAPRRAPARRRVYRACSSSSSPSSPPSSP
TPVVAPPSPSPSSAPAPDSAIFRCPRCGSALPPAAAQQLSSLPAACGVCN
NAFPRNSSYVDLTVAPRAAAAVAALPRPLAALAQLAAAPRRQSLFQLPLI
SYAYERGWRDSFALSGFPGIERELDLLLDFAPRGQLVLDMSCGTGLMARR
LAVSRAYERVIAADFSAAMLREAAVRARADAAAPEFDLLRADVAALPLRD
AVVDTVHVGAALHCWPCVPDGLREVHRVLKPGGKLFATTFANGMDHIAAV
RDLSPLERVRALVHARRVEAMRTAMYTFFERKQLLYLAQAAGFEDVDVTL
DKFFLVLRCRKPLK*
back to top

spliced messenger RNA

>Ggra1102.t1 ID=Ggra1102.t1|Name=Ggra1102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000945_pilon:50479..51573- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCCGCCGTCGTCGCCGCCTCCTTCGTGCCGGCGCTGCCGCTTGC
ACGCGCCGCGTGCGCCGCGCCGCGCCGCGCGCCCGCGCGTCGCCGCGTCT
ACCGCGCCTGCTCGTCGTCCTCGTCCCCGTCCTCGCCGCCGTCCTCGCCC
ACGCCTGTCGTCGCGCCGCCGTCGCCGTCGCCGTCTTCCGCGCCCGCGCC
CGACTCGGCCATCTTCCGCTGCCCGCGCTGCGGCAGCGCGCTGCCGCCGG
CCGCGGCGCAGCAGCTGTCGTCGCTGCCAGCCGCTTGCGGCGTGTGCAAC
AACGCGTTCCCGCGCAACTCCAGCTACGTCGACCTCACGGTGGCGCCGCG
CGCCGCAGCCGCCGTTGCCGCGCTGCCGCGCCCGCTGGCCGCGCTGGCGC
AGCTGGCCGCCGCGCCGCGCCGACAGTCGCTGTTCCAGCTGCCGCTCATC
TCGTACGCGTACGAGCGCGGCTGGCGCGACTCCTTCGCACTGTCCGGCTT
CCCGGGCATCGAGCGCGAGCTGGACCTGCTGCTCGACTTTGCGCCGCGCG
GCCAGCTCGTCCTCGACATGTCGTGCGGCACGGGGCTCATGGCGCGTCGT
CTGGCCGTGTCGCGCGCGTACGAGCGTGTGATAGCCGCTGATTTCTCCGC
CGCCATGCTGCGAGAGGCGGCTGTGCGCGCGCGCGCCGACGCCGCCGCGC
CCGAGTTTGACCTGCTGCGCGCCGATGTCGCCGCGCTGCCGCTGCGCGAC
GCCGTGGTGGATACCGTCCATGTGGGCGCCGCGCTGCACTGCTGGCCGTG
CGTGCCGGATGGCTTGCGCGAGGTGCACCGCGTGCTCAAGCCGGGCGGCA
AGCTGTTTGCCACCACGTTTGCGAACGGGATGGATCATATCGCTGCTGTG
CGCGATCTGTCGCCGCTGGAGCGCGTGAGGGCGCTGGTGCACGCCAGACG
CGTGGAGGCGATGCGTACCGCTATGTATACCTTCTTTGAGCGAAAGCAGC
TGCTTTACTTGGCGCAGGCGGCTGGCTTTGAGGATGTCGACGTCACGCTT
GATAAGTTTTTCCTGGTGCTGCGATGTAGGAAGCCGTTGAAATGA
back to top

protein sequence of Ggra1102.t1

>Ggra1102.t1 ID=Ggra1102.t1|Name=Ggra1102.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=365bp
MRAAVVAASFVPALPLARAACAAPRRAPARRRVYRACSSSSSPSSPPSSP
TPVVAPPSPSPSSAPAPDSAIFRCPRCGSALPPAAAQQLSSLPAACGVCN
NAFPRNSSYVDLTVAPRAAAAVAALPRPLAALAQLAAAPRRQSLFQLPLI
SYAYERGWRDSFALSGFPGIERELDLLLDFAPRGQLVLDMSCGTGLMARR
LAVSRAYERVIAADFSAAMLREAAVRARADAAAPEFDLLRADVAALPLRD
AVVDTVHVGAALHCWPCVPDGLREVHRVLKPGGKLFATTFANGMDHIAAV
RDLSPLERVRALVHARRVEAMRTAMYTFFERKQLLYLAQAAGFEDVDVTL
DKFFLVLRCRKPLK*
back to top

mRNA from alignment at tig00000945_pilon:50479..51573-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1102.t1 ID=Ggra1102.t1|Name=Ggra1102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000945_pilon:50479..51573- (Gracilaria gracilis GNS1m male)
ATGCGTGCCGCCGTCGTCGCCGCCTCCTTCGTGCCGGCGCTGCCGCTTGC
ACGCGCCGCGTGCGCCGCGCCGCGCCGCGCGCCCGCGCGTCGCCGCGTCT
ACCGCGCCTGCTCGTCGTCCTCGTCCCCGTCCTCGCCGCCGTCCTCGCCC
ACGCCTGTCGTCGCGCCGCCGTCGCCGTCGCCGTCTTCCGCGCCCGCGCC
CGACTCGGCCATCTTCCGCTGCCCGCGCTGCGGCAGCGCGCTGCCGCCGG
CCGCGGCGCAGCAGCTGTCGTCGCTGCCAGCCGCTTGCGGCGTGTGCAAC
AACGCGTTCCCGCGCAACTCCAGCTACGTCGACCTCACGGTGGCGCCGCG
CGCCGCAGCCGCCGTTGCCGCGCTGCCGCGCCCGCTGGCCGCGCTGGCGC
AGCTGGCCGCCGCGCCGCGCCGACAGTCGCTGTTCCAGCTGCCGCTCATC
TCGTACGCGTACGAGCGCGGCTGGCGCGACTCCTTCGCACTGTCCGGCTT
CCCGGGCATCGAGCGCGAGCTGGACCTGCTGCTCGACTTTGCGCCGCGCG
GCCAGCTCGTCCTCGACATGTCGTGCGGCACGGGGCTCATGGCGCGTCGT
CTGGCCGTGTCGCGCGCGTACGAGCGTGTGATAGCCGCTGATTTCTCCGC
CGCCATGCTGCGAGAGGCGGCTGTGCGCGCGCGCGCCGACGCCGCCGCGC
CCGAGTTTGACCTGCTGCGCGCCGATGTCGCCGCGCTGCCGCTGCGCGAC
GCCGTGGTGGATACCGTCCATGTGGGCGCCGCGCTGCACTGCTGGCCGTG
CGTGCCGGATGGCTTGCGCGAGGTGCACCGCGTGCTCAAGCCGGGCGGCA
AGCTGTTTGCCACCACGTTTGCGAACGGGATGGATCATATCGCTGCTGTG
CGCGATCTGTCGCCGCTGGAGCGCGTGAGGGCGCTGGTGCACGCCAGACG
CGTGGAGGCGATGCGTACCGCTATGTATACCTTCTTTGAGCGAAAGCAGC
TGCTTTACTTGGCGCAGGCGGCTGGCTTTGAGGATGTCGACGTCACGCTT
GATAAGTTTTTCCTGGTGCTGCGATGTAGGAAGCCGTTGAAATGA
back to top

Coding sequence (CDS) from alignment at tig00000945_pilon:50479..51573-

>Ggra1102.t1 ID=Ggra1102.t1|Name=Ggra1102.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1095bp|location=Sequence derived from alignment at tig00000945_pilon:50479..51573- (Gracilaria gracilis GNS1m male)
ATGCGTGCCGCCGTCGTCGCCGCCTCCTTCGTGCCGGCGCTGCCGCTTGC
ACGCGCCGCGTGCGCCGCGCCGCGCCGCGCGCCCGCGCGTCGCCGCGTCT
ACCGCGCCTGCTCGTCGTCCTCGTCCCCGTCCTCGCCGCCGTCCTCGCCC
ACGCCTGTCGTCGCGCCGCCGTCGCCGTCGCCGTCTTCCGCGCCCGCGCC
CGACTCGGCCATCTTCCGCTGCCCGCGCTGCGGCAGCGCGCTGCCGCCGG
CCGCGGCGCAGCAGCTGTCGTCGCTGCCAGCCGCTTGCGGCGTGTGCAAC
AACGCGTTCCCGCGCAACTCCAGCTACGTCGACCTCACGGTGGCGCCGCG
CGCCGCAGCCGCCGTTGCCGCGCTGCCGCGCCCGCTGGCCGCGCTGGCGC
AGCTGGCCGCCGCGCCGCGCCGACAGTCGCTGTTCCAGCTGCCGCTCATC
TCGTACGCGTACGAGCGCGGCTGGCGCGACTCCTTCGCACTGTCCGGCTT
CCCGGGCATCGAGCGCGAGCTGGACCTGCTGCTCGACTTTGCGCCGCGCG
GCCAGCTCGTCCTCGACATGTCGTGCGGCACGGGGCTCATGGCGCGTCGT
CTGGCCGTGTCGCGCGCGTACGAGCGTGTGATAGCCGCTGATTTCTCCGC
CGCCATGCTGCGAGAGGCGGCTGTGCGCGCGCGCGCCGACGCCGCCGCGC
CCGAGTTTGACCTGCTGCGCGCCGATGTCGCCGCGCTGCCGCTGCGCGAC
GCCGTGGTGGATACCGTCCATGTGGGCGCCGCGCTGCACTGCTGGCCGTG
CGTGCCGGATGGCTTGCGCGAGGTGCACCGCGTGCTCAAGCCGGGCGGCA
AGCTGTTTGCCACCACGTTTGCGAACGGGATGGATCATATCGCTGCTGTG
CGCGATCTGTCGCCGCTGGAGCGCGTGAGGGCGCTGGTGCACGCCAGACG
CGTGGAGGCGATGCGTACCGCTATGTATACCTTCTTTGAGCGAAAGCAGC
TGCTTTACTTGGCGCAGGCGGCTGGCTTTGAGGATGTCGACGTCACGCTT
GATAAGTTTTTCCTGGTGCTGCGATGTAGGAAGCCGTTGAAATGA
back to top