Ggra4281.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4281.t1
Unique NameGgra4281.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000944_piloncontigtig00000944_pilon:48018..51822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4281Ggra4281Gracilaria gracilis GNS1m malegenetig00000944_pilon 48018..51822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1Ggra4281.t1Gracilaria gracilis GNS1m malepolypeptidetig00000944_pilon 48018..51822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1.start1Ggra4281.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000944_pilon 48018..48020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1.CDS1Ggra4281.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000944_pilon 48018..48080 +
Ggra4281.t1.CDS2Ggra4281.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000944_pilon 48184..48361 +
Ggra4281.t1.CDS3Ggra4281.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000944_pilon 51119..51822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1.exon1Ggra4281.t1.exon1Gracilaria gracilis GNS1m maleexontig00000944_pilon 48018..48080 +
Ggra4281.t1.exon2Ggra4281.t1.exon2Gracilaria gracilis GNS1m maleexontig00000944_pilon 48184..48361 +
Ggra4281.t1.exon3Ggra4281.t1.exon3Gracilaria gracilis GNS1m maleexontig00000944_pilon 51119..51822 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1.intron1Ggra4281.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000944_pilon 48081..48183 +
Ggra4281.t1.intron2Ggra4281.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000944_pilon 48362..51118 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4281.t1.stop1Ggra4281.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000944_pilon 51820..51822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4281.t1 ID=Ggra4281.t1|Name=Ggra4281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MGETSGVIQNASAAIHVSFEKALKELRRPDGPATPFVNCRQIVAAILVSK
GTLISASQFLDEVLRYQHTNENCSLPMLSMHETKVWLRGGNLFEDGESVV
QCSDQIFSFDREPPQDESLPEDYVVECETVLHQTYGEIELCSLLYRKGNR
VAFSELLPQTILNNLTQNLEEMPLRHTDVFFDVSGREQEFASRAVFHLST
GERDEVELRRKVFTSEGEGECQVPVDATEVSSALMWAMIGIWITSFLIFT
VTLLFRSRIFFNMSNPLHWAQKAVIDDDGLGGEKNPIVSSFEMDGKMFVV
LSCSTNSEQDESGV*
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spliced messenger RNA

>Ggra4281.t1 ID=Ggra4281.t1|Name=Ggra4281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000944_pilon:48018..51822+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAGACGTCAGGAGTGATTCAAAACGCAAGCGCTGCTATTCATGT
GTCTTTTGAGAAAGCTTTGAAGGAGCTTAGGCGCCCCGACGGGCCGGCGA
CTCCATTCGTAAATTGTCGACAAATTGTGGCCGCTATTCTAGTCAGCAAA
GGAACCCTGATTTCTGCCAGTCAATTCCTAGATGAAGTCCTCCGCTATCA
GCACACTAACGAAAACTGCTCACTGCCCATGTTATCAATGCATGAAACCA
AGGTCTGGCTGAGGGGAGGAAATTTGTTTGAGGATGGCGAGTCCGTCGTC
CAGTGCTCGGACCAGATTTTCTCCTTTGATCGTGAGCCTCCTCAAGATGA
ATCGCTACCGGAAGACTACGTTGTGGAATGCGAGACGGTTCTTCACCAAA
CATACGGAGAAATTGAACTCTGTTCACTTCTTTATCGAAAAGGAAATCGA
GTAGCCTTCTCAGAATTACTGCCACAAACAATTCTAAACAATCTCACTCA
AAACCTTGAAGAAATGCCACTACggcacacggatgtgttttttgatgttt
ctggaagagagcaagagtttgcatccagggctgtgtttcatTTGTCCACG
GGTGAGCGAGACGAGGTGGAGCTGCGTCGCAAAGTGTTCACCAGTGAAGG
AGAAGGGGAGTGCCAGGTTCCCGTCGACGCTACAGAAGTGAGTTCGGCGT
TGATGTGGGCAATGATTGGGATCTGGATAACATCTTTTCTGATATTCACA
GTTACCTTGCTGTTTCGCTCTCGCATTTTCTTCAATATGAGTAATCCATT
ACACTGGGCCCAGAAAGCTGTTATTGACGACGACGGCCTTGGAGGCGAGA
AGAACCCCATAGTTTCTAGCTTTGAAATGGATGGGAAAATGTTTGTGGTG
TTATCATGCTCGACGAATTCAGAGCAGGATGAAAGTGGTGTTTGA
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protein sequence of Ggra4281.t1

>Ggra4281.t1 ID=Ggra4281.t1|Name=Ggra4281.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MGETSGVIQNASAAIHVSFEKALKELRRPDGPATPFVNCRQIVAAILVSK
GTLISASQFLDEVLRYQHTNENCSLPMLSMHETKVWLRGGNLFEDGESVV
QCSDQIFSFDREPPQDESLPEDYVVECETVLHQTYGEIELCSLLYRKGNR
VAFSELLPQTILNNLTQNLEEMPLRHTDVFFDVSGREQEFASRAVFHLST
GERDEVELRRKVFTSEGEGECQVPVDATEVSSALMWAMIGIWITSFLIFT
VTLLFRSRIFFNMSNPLHWAQKAVIDDDGLGGEKNPIVSSFEMDGKMFVV
LSCSTNSEQDESGV*
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mRNA from alignment at tig00000944_pilon:48018..51822+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4281.t1 ID=Ggra4281.t1|Name=Ggra4281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3805bp|location=Sequence derived from alignment at tig00000944_pilon:48018..51822+ (Gracilaria gracilis GNS1m male)
ATGGGTGAGACGTCAGGAGTGATTCAAAACGCAAGCGCTGCTATTCATGT
GTCTTTTGAGAAAGTAAGTGTTAAATCTGGAATAATCCAGAATTGTACTT
CCAACCTCCTTTCCCTGTGATATAACTTTACTGACGGTTGAACTTTCCCC
CTTTATAATTTCGAAGGCTTTGAAGGAGCTTAGGCGCCCCGACGGGCCGG
CGACTCCATTCGTAAATTGTCGACAAATTGTGGCCGCTATTCTAGTCAGC
AAAGGAACCCTGATTTCTGCCAGTCAATTCCTAGATGAAGTCCTCCGCTA
TCAGCACACTAACGAAAACTGCTCACTGCCCATGTTATCAATGCGTCAGA
GGGAAATCGTACCGGCATTTGTTAAACTCGTTTACTCCGTGGACACCTTT
TTTGCTCTCACGCCGAGACAGCGGATGAAACTACCACAGCAATTTCGATC
GGAACAATTTCATAATCTTCTTCGCCTGCAATCCCGCTTGAGACAGGGCC
GGAGTGTGGCTTTAATGGCAATGGAAGAGTATCTGATGGATATATTTAAT
AGTTGCAACGAATTAGAAGTTGCTTCCAGACGAACTCTTCCTAGGCGTTG
GACGAATATTATCTCAAGTCTAGTTCTTGAACTGAAAGATTCAGTAGATT
CCTCATAGAATTGTATTAAATGTGCCTCTCCTTCCGTCCATTTCGAGACT
TTTCTCTTCTTCGGAGCACTTGACAATTGCCCTTCACAAAGGGATTGTCT
TCGAGAAGAGGCTTGGATTGGATAGCAAACTTGTAAGGCACATAGATCTG
ACACTCTTCTGTGCCCACAAATTCAATCAGCAAGTGTATGCACTTCCACT
TCTTTAGTACTTAATTAGTCGCAACGCTCAACTCGCATTTCGGCGTGCTC
GGTAGCACCGATTGGAAGTTCAGGCCGATTAATCAAATACCTGGTCCTCA
TTAATCTACCCAATCTACGCCCGTGTTGAAAAGACATCCTGGTTTACGTA
CCGTTGGCACCTCAGATACAAGACGTTTTATGATTGTAGGGGTTCAGCAA
GTAGTTTTTCTGTTCCTACTGCCGTTCATTGTCTCGAAGAATAGGTGAAA
TAGATACTAAAGCCTCCATCGAAGACTACGCGATTTCGTCAAATCGGACG
AAACGACAAACTGTTCTTTCTCCAAGTGCCTCTGAGAAACCACTGGATTC
TTGCATCCCAAGAATCTTTCAGGGAgaacagttttctgtggccaatgcaa
agggttgctaatgtcaaagcatatctgagagcgaaagaaaaacctcggca
ccactgcgagcaaggatagagcagataccgttaagaatgcatagagaaat
ccgtctggcacaatcgtagcatcgacctcatttctgaaatcacacatacc
cacaccctccgtagtgaacacttctcgacgtagcgagattggatttggcc
atgactgggagaataggatcaccgccctcctcgcaaactcgttttccagt
ccagTGAAGTCGAAGTATACATCGGTGTGCCAAACGGGTAAAAGGTTTCT
ATTGTTAGTCACATTCGACAGGATCGAAGTATTAGACGagtaggtgaagg
tcacccttgtcccatttgtatacaagaacgcacaagcttcagtttggtcc
tcaggtgcagcttgctcgggataGACCGCACACCCTGTGAAGAAATCAGC
AGGAAGAGGCTCAGGTGGGGCGTCGTTGGGCGAAAACGAATACAACAAGT
CCGTGCATTGAGTTACAAATTCTTCACCGTCACGGAACAGATTCCCCGCT
CTTTGTTGAATGACAGTGCTATTCGCGTCAGTACCATTCATGTCAAGGCA
TCGAAGTAGAATGATGCTCGACAGAGATGTTGAATTGCTGAAGCCTTGTC
GTCTCCCCCCAGAGCTCAGAGAAGTACAATTCCTTTTCTCCCATCTAGTC
AAAATCgtggggtcgctggaaaacgagatgaggacttcgaggatgatgaa
aattgccgtggtagcagcgaatagcagcctcgtgcgagtttggtggtttc
gcacattaatcgatgcgcgtctttgaagcgatttactctcgaaaaaacaa
ttccagcgcagtgcgccggataggagggcaacttcggaggcggcggagat
aaatgtgaagatgagactgacataCTGTGACTTAAGCTGGAAAACCACCA
TGTAGACTAGAAAAGAGAGGGAGAGGGAGCTGAAGTCAAGGCGGACGAAT
TGGAGCGATGTCCGTCATCTTCAAACACGGTCTCTTTGGAAATATATAGA
GAAGGAAGAGAAAATATCCGTAAGCGGAGACATAACTAATCATACATTCC
AACAATTCCTACTTGTGTAACATTGCTCCTTTAGGTGTTATACAGCAGAT
GAACAAAGCGGGGAATACACAACCCGGCTAACAATTATCCAAGTGTACAA
CCAACAGCAGAGTGTCCTGGGGTTTTGGTTTCGGCAGAGGGGAAACCAAG
GCGTTTGTTTCGAGTAAAGAAtgtcgtgctggagaccgccagttaagcat
acagcagagacagttgcgccccgctcgaagctgagcttgaaatagttaat
agtgtggctatagaacgcgacttctagccacaaatatcttgtagaaccgt
ccgcgggtctccttaaaagccccacgaacaaaAGTTTAGGCCCAACCCGC
CCCCCCCCCTCTATCATCTTTCTTCTTCGGTTCTGCAGTCAACATGATTG
TAATTCCTCTAAAGTCGCAACatgccagtctcatcatttcattcttctcg
gccgcctccgagctcgctttcttgttcgcggcactaaactggaacggctt
tttcgagtgtatggcgcttcagaaaggagaacgtctcacagtgcgccacc
atctcaaccgtaccaggttactggccttaacaacggcgtttatatttatc
atcgtggaaattctcaactcattctacagcgaccctacTTTTATCATTGA
AGCAAAACCTTGCAGGTTTCTGACCTCCGCTAATGTGCAAGAGAACTTGA
CGACTACAACCTATCAATTCAATCGTATTGCACTTTCATGTGTTGACGCA
GATGAAACCAAGGTCTGGCTGAGGGGAGGAAATTTGTTTGAGGATGGCGA
GTCCGTCGTCCAGTGCTCGGACCAGATTTTCTCCTTTGATCGTGAGCCTC
CTCAAGATGAATCGCTACCGGAAGACTACGTTGTGGAATGCGAGACGGTT
CTTCACCAAACATACGGAGAAATTGAACTCTGTTCACTTCTTTATCGAAA
AGGAAATCGAGTAGCCTTCTCAGAATTACTGCCACAAACAATTCTAAACA
ATCTCACTCAAAACCTTGAAGAAATGCCACTACggcacacggatgtgttt
tttgatgtttctggaagagagcaagagtttgcatccagggctgtgtttca
tTTGTCCACGGGTGAGCGAGACGAGGTGGAGCTGCGTCGCAAAGTGTTCA
CCAGTGAAGGAGAAGGGGAGTGCCAGGTTCCCGTCGACGCTACAGAAGTG
AGTTCGGCGTTGATGTGGGCAATGATTGGGATCTGGATAACATCTTTTCT
GATATTCACAGTTACCTTGCTGTTTCGCTCTCGCATTTTCTTCAATATGA
GTAATCCATTACACTGGGCCCAGAAAGCTGTTATTGACGACGACGGCCTT
GGAGGCGAGAAGAACCCCATAGTTTCTAGCTTTGAAATGGATGGGAAAAT
GTTTGTGGTGTTATCATGCTCGACGAATTCAGAGCAGGATGAAAGTGGTG
TTTGA
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Coding sequence (CDS) from alignment at tig00000944_pilon:48018..51822+

>Ggra4281.t1 ID=Ggra4281.t1|Name=Ggra4281.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000944_pilon:48018..51822+ (Gracilaria gracilis GNS1m male)
ATGGGTGAGACGTCAGGAGTGATTCAAAACGCAAGCGCTGCTATTCATGT
GTCTTTTGAGAAAGCTTTGAAGGAGCTTAGGCGCCCCGACGGGCCGGCGA
CTCCATTCGTAAATTGTCGACAAATTGTGGCCGCTATTCTAGTCAGCAAA
GGAACCCTGATTTCTGCCAGTCAATTCCTAGATGAAGTCCTCCGCTATCA
GCACACTAACGAAAACTGCTCACTGCCCATGTTATCAATGCATGAAACCA
AGGTCTGGCTGAGGGGAGGAAATTTGTTTGAGGATGGCGAGTCCGTCGTC
CAGTGCTCGGACCAGATTTTCTCCTTTGATCGTGAGCCTCCTCAAGATGA
ATCGCTACCGGAAGACTACGTTGTGGAATGCGAGACGGTTCTTCACCAAA
CATACGGAGAAATTGAACTCTGTTCACTTCTTTATCGAAAAGGAAATCGA
GTAGCCTTCTCAGAATTACTGCCACAAACAATTCTAAACAATCTCACTCA
AAACCTTGAAGAAATGCCACTACggcacacggatgtgttttttgatgttt
ctggaagagagcaagagtttgcatccagggctgtgtttcatTTGTCCACG
GGTGAGCGAGACGAGGTGGAGCTGCGTCGCAAAGTGTTCACCAGTGAAGG
AGAAGGGGAGTGCCAGGTTCCCGTCGACGCTACAGAAGTGAGTTCGGCGT
TGATGTGGGCAATGATTGGGATCTGGATAACATCTTTTCTGATATTCACA
GTTACCTTGCTGTTTCGCTCTCGCATTTTCTTCAATATGAGTAATCCATT
ACACTGGGCCCAGAAAGCTGTTATTGACGACGACGGCCTTGGAGGCGAGA
AGAACCCCATAGTTTCTAGCTTTGAAATGGATGGGAAAATGTTTGTGGTG
TTATCATGCTCGACGAATTCAGAGCAGGATGAAAGTGGTGTTTGA
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