Ggra4618.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4618.t1
Unique NameGgra4618.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:148750..149616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1227500.C494_07375
Preferred namednaJ
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl183963|Halobacteria
KEGG koko:K03686
Evalue0.000952
EggNOG OGsCOG0484@1|root,arCOG02846@2157|Archaea,2XV5D@28890|Euryarchaeota,23S61@183963|Halobacteria
DescriptionATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4618Ggra4618Gracilaria gracilis GNS1m malegenetig00000941_pilon 148750..149616 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4618.t1.stop1Ggra4618.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 148750..148752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4618.t1.CDS1Ggra4618.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 148750..149616 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4618.t1.exon1Ggra4618.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 148750..149616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4618.t1.start1Ggra4618.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 149614..149616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4618.t1Ggra4618.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 148750..149616 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4618.t1 ID=Ggra4618.t1|Name=Ggra4618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MVDEKALKEGNDAQQLVEASLSKLDLDATPLEELQLARVVTRKQQQIVFV
NYSSDQDDSDSDEEDGRLISHREYHDNGQPRLFKTLQNLTDHTGRPYQRI
IEEKHFDIGGVCRVDVHFAIGQPYLYRKHYWPNQRLKSESVFWVDDEVTM
NCKKWGHWRTYYESGNIQTELQYRDGVRYGFCKRYAPDGAIEWVKDYTKQ
YLERIEEFNEKKGKVAFTIMDACNVLGFSALPSSMREVNSQYRTKCAPVH
PDKTPDPDATEEFIKISRARDVLKDYFEKHGAPSNHAQ*
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spliced messenger RNA

>Ggra4618.t1 ID=Ggra4618.t1|Name=Ggra4618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000941_pilon:148750..149616- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACGAAAAAGCGTTGAAGGAGGGCAATGACGCACAACAGCTTGT
TGAGGCGTCGTTAAGTAAGCTCGACCTCGACGCTACACCTTTGGAAGAAC
TTCAACTCGCTAGAGTCGTCACGAGAAAGCAGCAGCAAATCGTCTTTGTC
AACTACAGTTCCGACCAGGACGACTCGGATTCAGATGAAGAAGACGGCAG
GTTGATCAGTCACAGAGAGTATCATGACAATGGTCAGCCACGATTGTTCA
AAACGCTCCAAAATCTCACTGACCACACCGGAAGGCCTTATCAACGAATT
ATCGAGGAAAAGCACTTCGATATTGGTGGCGTTTGCCGGGTTGATGTTCA
CTTCGCAATCGGTCAGCCCTATCTATATCGGAAGCATTATTGGCCTAATC
AGAGGCTCAAGTCGGAGTCTGTGTTTTGGGTGGATGATGAAGTAACAATG
AACTGTAAGAAGTGGGGACACTGGCGAACTTACTACGAATCCGGAAATAT
TCAGACTGAACTACAGTACCGTGATGGTGTTCGCTATGGCTTCTGCAAGC
GATATGCTCCAGATGGAGCTATTGAATGGGTTAAAGACTATACCAAACAA
TACTTGGAACGTATTGAGGAATTCAACGAGAAGAAAGGAAAGGTGGCCTT
TACGATTATGGATGCCTGTAACGTTCTTGGATTTAGTGCCTTGCCGAGCT
CCATGAGGGAAGTGAATTCCCAATACCGCACCAAATGTGCCCCTGTTCAT
CCCGACAAAACTCCCGACCCGGATGCTACCGAAGAATTCATCAAAATAAG
CCGAGCCCGTGATGTCCTAAAGGACTACTTCGAGAAGCACGGTGCCCCAA
GTAATCATGCACAGTAA
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protein sequence of Ggra4618.t1

>Ggra4618.t1 ID=Ggra4618.t1|Name=Ggra4618.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MVDEKALKEGNDAQQLVEASLSKLDLDATPLEELQLARVVTRKQQQIVFV
NYSSDQDDSDSDEEDGRLISHREYHDNGQPRLFKTLQNLTDHTGRPYQRI
IEEKHFDIGGVCRVDVHFAIGQPYLYRKHYWPNQRLKSESVFWVDDEVTM
NCKKWGHWRTYYESGNIQTELQYRDGVRYGFCKRYAPDGAIEWVKDYTKQ
YLERIEEFNEKKGKVAFTIMDACNVLGFSALPSSMREVNSQYRTKCAPVH
PDKTPDPDATEEFIKISRARDVLKDYFEKHGAPSNHAQ*
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mRNA from alignment at tig00000941_pilon:148750..149616-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4618.t1 ID=Ggra4618.t1|Name=Ggra4618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000941_pilon:148750..149616- (Gracilaria gracilis GNS1m male)
ATGGTGGACGAAAAAGCGTTGAAGGAGGGCAATGACGCACAACAGCTTGT
TGAGGCGTCGTTAAGTAAGCTCGACCTCGACGCTACACCTTTGGAAGAAC
TTCAACTCGCTAGAGTCGTCACGAGAAAGCAGCAGCAAATCGTCTTTGTC
AACTACAGTTCCGACCAGGACGACTCGGATTCAGATGAAGAAGACGGCAG
GTTGATCAGTCACAGAGAGTATCATGACAATGGTCAGCCACGATTGTTCA
AAACGCTCCAAAATCTCACTGACCACACCGGAAGGCCTTATCAACGAATT
ATCGAGGAAAAGCACTTCGATATTGGTGGCGTTTGCCGGGTTGATGTTCA
CTTCGCAATCGGTCAGCCCTATCTATATCGGAAGCATTATTGGCCTAATC
AGAGGCTCAAGTCGGAGTCTGTGTTTTGGGTGGATGATGAAGTAACAATG
AACTGTAAGAAGTGGGGACACTGGCGAACTTACTACGAATCCGGAAATAT
TCAGACTGAACTACAGTACCGTGATGGTGTTCGCTATGGCTTCTGCAAGC
GATATGCTCCAGATGGAGCTATTGAATGGGTTAAAGACTATACCAAACAA
TACTTGGAACGTATTGAGGAATTCAACGAGAAGAAAGGAAAGGTGGCCTT
TACGATTATGGATGCCTGTAACGTTCTTGGATTTAGTGCCTTGCCGAGCT
CCATGAGGGAAGTGAATTCCCAATACCGCACCAAATGTGCCCCTGTTCAT
CCCGACAAAACTCCCGACCCGGATGCTACCGAAGAATTCATCAAAATAAG
CCGAGCCCGTGATGTCCTAAAGGACTACTTCGAGAAGCACGGTGCCCCAA
GTAATCATGCACAGTAA
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Coding sequence (CDS) from alignment at tig00000941_pilon:148750..149616-

>Ggra4618.t1 ID=Ggra4618.t1|Name=Ggra4618.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000941_pilon:148750..149616- (Gracilaria gracilis GNS1m male)
ATGGTGGACGAAAAAGCGTTGAAGGAGGGCAATGACGCACAACAGCTTGT
TGAGGCGTCGTTAAGTAAGCTCGACCTCGACGCTACACCTTTGGAAGAAC
TTCAACTCGCTAGAGTCGTCACGAGAAAGCAGCAGCAAATCGTCTTTGTC
AACTACAGTTCCGACCAGGACGACTCGGATTCAGATGAAGAAGACGGCAG
GTTGATCAGTCACAGAGAGTATCATGACAATGGTCAGCCACGATTGTTCA
AAACGCTCCAAAATCTCACTGACCACACCGGAAGGCCTTATCAACGAATT
ATCGAGGAAAAGCACTTCGATATTGGTGGCGTTTGCCGGGTTGATGTTCA
CTTCGCAATCGGTCAGCCCTATCTATATCGGAAGCATTATTGGCCTAATC
AGAGGCTCAAGTCGGAGTCTGTGTTTTGGGTGGATGATGAAGTAACAATG
AACTGTAAGAAGTGGGGACACTGGCGAACTTACTACGAATCCGGAAATAT
TCAGACTGAACTACAGTACCGTGATGGTGTTCGCTATGGCTTCTGCAAGC
GATATGCTCCAGATGGAGCTATTGAATGGGTTAAAGACTATACCAAACAA
TACTTGGAACGTATTGAGGAATTCAACGAGAAGAAAGGAAAGGTGGCCTT
TACGATTATGGATGCCTGTAACGTTCTTGGATTTAGTGCCTTGCCGAGCT
CCATGAGGGAAGTGAATTCCCAATACCGCACCAAATGTGCCCCTGTTCAT
CCCGACAAAACTCCCGACCCGGATGCTACCGAAGAATTCATCAAAATAAG
CCGAGCCCGTGATGTCCTAAAGGACTACTTCGAGAAGCACGGTGCCCCAA
GTAATCATGCACAGTAA
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