Ggra4598.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4598.t1
Unique NameGgra4598.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Homology
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BLAST of Ggra4598.t1 vs. uniprot
Match: A0A2V3IM68 (DUF4203 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM68_9FLOR)

HSP 1 Score: 338 bits (867), Expect = 4.490e-116
Identity = 174/215 (80.93%), Postives = 195/215 (90.70%), Query Frame = 0 
Query:    1 MAVVSAVPDGYAASPGHMLYIPAGLLMLFFGGFLVKASLCVISCVLVSRFVYSLVEAVQLEPLCVVITVALAAVVTFLLVLEACEQGPHFATGIVLGTCIALTFYPAPIFSIVLAVVVLSAAFGLVFSLVPKEVGIFITSYGGAYMIFYGMELIDSDVFEGSKLVPEFVKSDNIDMWFSVLSFLVVGLLGCCVQLILVSGQAQPAYSRSHYIEIP 215
            MAV+  + D YA S GHMLYIPAGLLMLFFGGFLVK SLCVISCV+VSRFVY+L+ +V  +P+  V  VA+AAV+TF+LVLE CEQGP FATG VLG CIALTFYPAP+ S+++AVVVLSAAFGLVFSLVPKEVGIFI+SYGGAYMIF+GMELIDSDVF+GS ++PEFVKSDNIDMWFSVLSF+VVGLLGCCVQLILVSGQAQPAYSRSHYIEIP
Sbjct:    1 MAVIDPLADPYAPSAGHMLYIPAGLLMLFFGGFLVKPSLCVISCVIVSRFVYALITSVSSDPILAVAAVAIAAVITFMLVLEICEQGPDFATGAVLGVCIALTFYPAPMLSLIMAVVVLSAAFGLVFSLVPKEVGIFISSYGGAYMIFFGMELIDSDVFDGSSVIPEFVKSDNIDMWFSVLSFMVVGLLGCCVQLILVSGQAQPAYSRSHYIEIP 215
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BLAST of Ggra4598.t1 vs. uniprot
Match: R7QQJ5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQJ5_CHOCR)

HSP 1 Score: 282 bits (722), Expect = 4.480e-94
Identity = 147/207 (71.01%), Postives = 172/207 (83.09%), Query Frame = 0 
Query:    9 DGYAASPGHMLYIPAGLLMLFFGGFLVKASLCVISCVLVSRFVYSLVEAVQLEPLCVVITVALAAVVTFLLVLEACEQGPHFATGIVLGTCIALTFYPAPIFSIVLAVVVLSAAFGLVFSLVPKEVGIFITSYGGAYMIFYGMELIDSDVFEGSKLVPEFVKSDNIDMWFSVLSFLVVGLLGCCVQLILVSGQAQPAYSRSHYIEIP 215
            D Y  + G ++YIPAGLLMLFFGGFLVKA+LC+ISC LV   V+       L+ + V++ VAL+A+ TF  VLEAC+QGP FATG VLGTCIALTFYPAPI SIVLAV++LSAAFGL F+LVPKEVGIF++SYGG +MIFYGMELIDSDVFEGS+ VP FV+ D+IDMWFSVLSFLVVGLLGCCVQLIL SGQA   +SR HY++IP
Sbjct:    4 DEYGPTAGRLMYIPAGLLMLFFGGFLVKAALCLISCALVGHLVFIAAVQAGLQYIPVILLVALSALATFAAVLEACDQGPDFATGAVLGTCIALTFYPAPILSIVLAVIILSAAFGLAFALVPKEVGIFLSSYGGGFMIFYGMELIDSDVFEGSRPVPAFVRVDSIDMWFSVLSFLVVGLLGCCVQLILFSGQANSGFSRYHYVDIP 210
The following BLAST results are available for this feature:
BLAST of Ggra4598.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IM684.490e-11680.93DUF4203 domain-containing protein n=1 Tax=Gracilar... [more]
R7QQJ54.480e-9471.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 176..198
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..215
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 82..86
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 105..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:77396..78043 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4598.t1Ggra4598.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 77396..78043 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4598.t1 ID=Ggra4598.t1|Name=Ggra4598.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MAVVSAVPDGYAASPGHMLYIPAGLLMLFFGGFLVKASLCVISCVLVSRF
VYSLVEAVQLEPLCVVITVALAAVVTFLLVLEACEQGPHFATGIVLGTCI
ALTFYPAPIFSIVLAVVVLSAAFGLVFSLVPKEVGIFITSYGGAYMIFYG
MELIDSDVFEGSKLVPEFVKSDNIDMWFSVLSFLVVGLLGCCVQLILVSG
QAQPAYSRSHYIEIP*
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