Ggra8342.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8342.t1
Unique NameGgra8342.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Homology
BLAST of Ggra8342.t1 vs. uniprot
Match: A0A2V3IKK1 (Gem-associated protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKK1_9FLOR)

HSP 1 Score: 192 bits (489), Expect = 1.960e-57
Identity = 114/257 (44.36%), Postives = 156/257 (60.70%), Query Frame = 0
Query:    1 MSDSEREQA-VALPLPESSDSSSTDSASAPPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAKKRHRLNTTVKLPAANDVNGMRRLLNQSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHDA 256
            MS+SE ++   ALPLP +S S S+ S+ APPVTAEQYLRRVR E   LP T VA +        +  S LP  RI  +P       + W  RL +++S +Q+ V  ++++       KLPA ND    +R+LN    GP+LSIVL LDFL +L L R++D +L  +P+      E  R  AS L   F +Q R QWLF L  +++PPLSR+ A+ LRSIL+KA++AR G++  +D RL+ LNVL  IL  +FGQ DA
Sbjct:    1 MSESEADEPRPALPLPSNSSSPSSQSSDAPPVTAEQYLRRVRRELDALPQTVVAETSPXXXXXXQTRSSLPISRIPPHPTLFPAPDEQWVQRLVEWFSTVQSAVALSRRQRNARNARKLPAVNDATSWKRILNDEK-GPLLSIVLALDFLRVLKLFRIIDHELGAMPNFTCPLSEQRRGTASTLADRFLYQRRHQWLFCLMAVLQPPLSRDSAATLRSILQKAAFARHGMTGVDDKRLSHLNVLIAILGTYFGQGDA 256          
BLAST of Ggra8342.t1 vs. uniprot
Match: A0A7S4DYW0 (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DYW0_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 4.820e-12
Identity = 68/240 (28.33%), Postives = 116/240 (48.33%), Query Frame = 0
Query:   29 PPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHR-IVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAKKR------HRLNTTVKLPAANDVNGMRRLLNQSSTG----PMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARF-GVSASEDHRLARLNVLTTILAQHFGQHDA 256
            PP  A +YLRRVR EAS+LP   V S I  KRV  +++  +P+ +   S P    P+P +W    T  +++ +  +++ + +          +T KLP + D          S+      P+L  VLR+D +S    LR +  +L     D+D              +  F +   QW ++L   +E P+  +++S LR + R  +  R  GVS+ +D  LA++N++ TI+++ F Q  A
Sbjct:   26 PPGDAMEYLRRVRHEASRLPQ-IVVSLIDSKRVK-QQTRYMPRPKPAASCPAGFLPLP-TWEDAATSHFTDFRQALVRRRLKCAPPSXXXXXSTEKLPGSADEQAWGAFCFGSTEHKGHPPLLRYVLRMDHVSTCSALRALRSRLT----DNDP-------------EKGFPEEAGQWAYALLAALEKPIDGQISSCLRELYRAFAAVRSKGVSSEDDVLLAKVNIILTIISRIFNQKVA 245          
BLAST of Ggra8342.t1 vs. uniprot
Match: L8GZD6 (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZD6_ACACA)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-11
Identity = 67/240 (27.92%), Postives = 111/240 (46.25%), Query Frame = 0
Query:   29 PPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLL-PKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAKKRHRLNTTVKLPAANDVNGMRRLLN--------------QSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQ 253
            PP+    YLRRVR EA ++P   V S+I  ++   ++++ L P   I   P  L P P+   T L  F +      L+    HR     K   A  +  +RR                  + T P +S+V+ LD +S+    +L++  +       +VD E H                 QWL++L + ++ P+  ++AS LRS+LR+ +  R  + + +D  L  LN+L TI+A++FGQ
Sbjct:   53 PPMDGFDYLRRVRWEAKRVPKV-VKSNIDPRQYDSRQTTFLTPPPDIAECPEALRPSPEWESTFLLNFDA------LRKDLAHRYEAMPKPKLAQPLPSIRRWKQINLGIHRHGDERTLVTPTRPTMSVVMTLDIVSVR---QLLEYHIRWAKKAKEVD-EVHT----------------QWLYALLSRLDKPIDADMASALRSLLRRLAEDRSRLESQQDQALPALNILITIIAKYFGQ 265          
BLAST of Ggra8342.t1 vs. uniprot
Match: A0A6P7S6V6 (Gem-associated protein 2 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7S6V6_OCTVU)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-10
Identity = 62/234 (26.50%), Postives = 112/234 (47.86%), Query Frame = 0
Query:   29 PPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRS-SLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAKKRHRLN---TTVKLPAANDVNGMRRLL--NQSSTGPMLSIVLRLDFLSMLCLLRLVDDQ-LEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHD 255
            PP+T  +YLRRVR EA   P+  VA S+  + +  K++  +L K   +  P  L P  + W  +    ++ ++  + + K  H      T  KLP A++V    +L      +  P  S  L    L +L L+ +++   +EQ+ + H           +      F  H+ +W+F+L T ++ PL+ E  S +R++ R  +  R  +++S D  L  LN++  ++ Q+F Q D
Sbjct:   27 PPMTGNEYLRRVRDEALCCPSVVVAKSLNTEAMNRKQNVHILAKDCCLPAPTGLEPSAE-WNRKQIADFAKIRQKLNEYKSTHESEIKKTRRKLPLASEVEEWFKLCFGKLKTLTPDESNALEGGCLPLLSLVAVMEQHCIEQLLNYH----------MNCFESIGFTHHQGKWIFALLTCLQKPLTPEACSAIRNLARICARLRSLMNSSTDPHLTPLNLIICLVCQYFEQKD 249          
BLAST of Ggra8342.t1 vs. uniprot
Match: gem-associated protein 2 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F46F09 (gem-associated protein 2 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F46F09)

HSP 1 Score: 65.5 bits (158), Expect = 5.060e-9
Identity = 59/238 (24.79%), Postives = 106/238 (44.54%), Query Frame = 0
Query:   29 PPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAK------KRHRLNTTVKLPAANDVNGMRRLLN-----QSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHD 255
            PPV+ E+Y++RV  EA +  +  VA  I  K++      + P    V  PPWL P       ++++F SN +  + + K      K +     + LP   D  G  +  +     +    P LS++         CL + + +++ +   +H     + + I  QL          QW+++L  ++E PL+ +V S LRS+ R  S  R      E H +  LN+   +++++F Q D
Sbjct:   24 PPVSGEEYIKRVMIEAQQCADVVVAD-IDHKQLRKPTIDVEPLSGCVEAPPWLGPTIDWQLYQVSEF-SNARLYISQLKNDVQTFKHNWKRPNINLPDIGDEKGWIKFCSGCYKEKIKIAPTLSVI--------FCLNQPIVERILEYLVEHLA---TQKNIEYQL---------GQWIYALLVILEMPLTPDVCSCLRSLARTCSVMRAESKQLEVHEIGALNLFICLVSRYFRQLD 239          
BLAST of Ggra8342.t1 vs. uniprot
Match: gem-associated protein 2 isoform X1 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258EB21 (gem-associated protein 2 isoform X1 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258EB21)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-7
Identity = 60/240 (25.00%), Postives = 102/240 (42.50%), Query Frame = 0
Query:   27 SAPPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAK------KRHRLNTTVKLPAANDVNGMRRLLN-----QSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHD 255
            S PPV+ E+Y++RV  EA +  +  VA  I  K++      + P    V  PPWL P  + W       +S+ +  V + K      K       + LP   D  G  +  +     +  T P LS++  L+   +  +L  +   L            S ++I  +L          QW+++L  ++E PL+ ++ S LRS+ R  S  R      E   +  LN+   ++A++F Q D
Sbjct:   22 SLPPVSGEEYIKRVVIEAQQCADVVVAD-IDHKQLKKPTIDIEPLSGCVEAPPWLGPT-RDWQLYQVSEFSDTRLYVSQLKNGIETFKSKLGRCEMNLPDIEDEKGWIKFCSGHNEEKVKTVPTLSVIFHLNQPMIEQILEYLVQHLS-----------SQKKIQYEL---------GQWIYALLVVLEMPLTPDICSCLRSLARTCSIMRARSEELEVREIGALNLFICLVARYFRQLD 239          
BLAST of Ggra8342.t1 vs. uniprot
Match: gem-associated protein 2 isoform X1 n=2 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005ACC9DB (gem-associated protein 2 isoform X1 n=2 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005ACC9DB)

HSP 1 Score: 60.8 bits (146), Expect = 2.140e-7
Identity = 64/233 (27.47%), Postives = 107/233 (45.92%), Query Frame = 0
Query:   27 SAPPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYS-NLQACVLKAKK---RHRLNTTVKLPAANDVNGMRRLLNQSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHD 255
            S PP++ E Y++RV  EA +  +  VA  I + R+     ++      +  P  LSP  +    ++  F S  L+   +KA++   R    TTVK P  +D NG       S+          LD +   CL +    Q+EQV +    + ES   +   L          QW+++L  ++E PL+ +V S LR++ R  S AR  +   E  ++  LN+   ++A++F Q D
Sbjct:   22 SQPPMSGEDYIKRVVIEAKQCEDVVVAR-IDEARLKKPTVNVKTLGGCLEAPENLSPTYEWQKCQIDDFSSVRLKISRIKAERENYRQYSRTTVKFPDVDDKNGWVNFCLGSAAEESAPRHPTLDII--FCLNQA---QVEQVLEYLIEEVESRGTVDCDL---------GQWIYALLAVLELPLNPDVCSSLRTLARSCSVARANLDPEEHEKVKALNLFICLVARYFRQLD 239          
BLAST of Ggra8342.t1 vs. uniprot
Match: gem-associated protein 2 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA375B (gem-associated protein 2 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA375B)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-6
Identity = 59/234 (25.21%), Postives = 102/234 (43.59%), Query Frame = 0
Query:   27 SAPPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQACVLKAK---KRHRLNTTVKLPAANDVNGMRRLLNQSSTGPMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESH--RQIASQLVQSFFFQHRDQWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQHFGQHD 255
            S PP+T ++YLRRV+ EA+K P+  VA  I  K++  K++  +   R    P   SP    W  +    +S ++  V K +   K   L+  V +P   D  G ++                   L +   L L D + E    D+     +     + + L    F     +W ++L   +E PL  E  S++R + R  S  R  + + E+ +L+ LN+L  ++ ++F Q D
Sbjct:   26 SVPPITPQEYLRRVQIEAAKCPDVVVAR-IDPKKLKKKQTVNVSLTRCHPAPEGCSP-GLKWQQQQVANFSAIRQKVNKHRMHWKSQPLDGNVMMPQVEDEEGWKKFCLGEK-------------LYLNSSLILPDGECENPGVDYIKATVTSVLEYLINWLGTKDFSPELGRWFYALLACLEKPLLPEGHSLIRQLARCCSEVRSHMESKEEEKLSALNLLICLVGRYFDQRD 244          
BLAST of Ggra8342.t1 vs. uniprot
Match: A0A812EDC0 (Gem-associated protein 2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812EDC0_SEPPH)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-6
Identity = 66/239 (27.62%), Postives = 97/239 (40.59%), Query Frame = 0
Query:   29 PPVTAEQYLRRVRTEASKLPNTFVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSP------VPQSWCTRLTQFYSNLQACVLKAKKRHRLNTTVKLPAANDVNGMRRLL---------------NQSSTG--PMLSIVLRLDFLSMLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRD-QWLFSLFTLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVL 243
            PP+T  +YLRRVR EA ++P   VA     K    +   +      +  P  L P      V  S   RL Q +   +    K  K  +     KLP + DVN   RL                N+  TG  P+LSIV  +D              +EQV + H            +  +S    HR  QW ++L   ++ PL+ E  S +R++ R+ SY R  + +  D +L  LN+L
Sbjct:   25 PPMTGNEYLRRVRNEALEIPAVVVAKRNFSKLNEKQNIHVQQNDGCLPAPEGLEPLLAWQHVQMSNFARLRQGFIEYKIAHQKEIKEEK----AKLPQSKDVNRWSRLCFGSLSSLKANTDDLQNEHDTGTPPLLSIVAAMD-----------QPCVEQVLEYH-----------VEWFRSTKLSHRQGQWFYALLASLQKPLTPEACSSIRTLARRCSYLRGLLESDTDAQLIPLNLL 237          
The following BLAST results are available for this feature:
BLAST of Ggra8342.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2V3IKK11.960e-5744.36Gem-associated protein 2 n=1 Tax=Gracilariopsis ch... [more]
A0A7S4DYW04.820e-1228.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
L8GZD62.060e-1127.92Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A6P7S6V61.300e-1026.50Gem-associated protein 2 n=2 Tax=Octopus TaxID=664... [more]
gem-associated protein 2 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F46F095.060e-924.79gem-associated protein 2 n=2 Tax=Osmia TaxID=12428... [more]
gem-associated protein 2 isoform X1 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258EB211.150e-725.00gem-associated protein 2 isoform X1 n=1 Tax=Megach... [more]
gem-associated protein 2 isoform X1 n=2 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005ACC9DB2.140e-727.47gem-associated protein 2 isoform X1 n=2 Tax=Fopius... [more]
gem-associated protein 2 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA375B1.050e-625.21gem-associated protein 2 isoform X1 n=2 Tax=Protop... [more]
A0A812EDC01.630e-627.62Gem-associated protein 2 n=1 Tax=Sepia pharaonis T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017364Gem-associated protein 2PIRSFPIRSF038038Gemin-2coord: 5..257
e-value: 1.4E-20
score: 71.7
IPR035426Gemin2/Brr1PFAMPF04938SIP1coord: 26..254
e-value: 1.4E-30
score: 106.7
NoneNo IPR availableGENE3D1.20.58.1070coord: 85..257
e-value: 1.4E-21
score: 79.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR12794:SF0GEM-ASSOCIATED PROTEIN 2coord: 4..255
NoneNo IPR availablePANTHERPTHR12794GEMIN2coord: 4..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:165771..166835 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8342.t1Ggra8342.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 165771..166835 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8342.t1 ID=Ggra8342.t1|Name=Ggra8342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MSDSEREQAVALPLPESSDSSSTDSASAPPVTAEQYLRRVRTEASKLPNT
FVASSIQKKRVPGKRSSLLPKHRIVSYPPWLSPVPQSWCTRLTQFYSNLQ
ACVLKAKKRHRLNTTVKLPAANDVNGMRRLLNQSSTGPMLSIVLRLDFLS
MLCLLRLVDDQLEQVPDDHDVDDESHRQIASQLVQSFFFQHRDQWLFSLF
TLIEPPLSREVASILRSILRKASYARFGVSASEDHRLARLNVLTTILAQH
FGQHDAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017364GEMIN2
IPR035426Gemin2/Brr1