Ggra1965.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1965.t1
Unique NameGgra1965.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:42594..43388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1965Ggra1965Gracilaria gracilis GNS1m malegenetig00000925_pilon 42594..43388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1965.t1.stop1Ggra1965.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 42594..42596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1965.t1.CDS1Ggra1965.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 42594..43388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1965.t1.exon1Ggra1965.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 42594..43388 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1965.t1.start1Ggra1965.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 43386..43388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1965.t1Ggra1965.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 42594..43388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1965.t1 ID=Ggra1965.t1|Name=Ggra1965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MAPLRLNIQITAAKGVGGVYPFAVACFDGDISHELYKSKAATTQQDGTAI
WNESFNIDLTNEMKTYEADNRPLPKYLTLFLFDTGSHGVPSLGSAGILLS
NVHEKGRSAGDFPVVNGTGSLALVAELEKADKGGFFHSDAAKITGAVAGA
GAAVGLGAFAFNKYKQRKKKRAGEGEEGEEQQQDQYVEENRQEQQQEQQA
NRPWYDPETSSDEDDETAVLAGQTGDTYAQQTHAPVSAYHAPQAAYASGV
HGTEGEDDEDDDDE*
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spliced messenger RNA

>Ggra1965.t1 ID=Ggra1965.t1|Name=Ggra1965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000925_pilon:42594..43388- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCTACGACTCAACATCCAAATCACCGCCGCCAAGGGCGTGGG
CGGCGTGTACCCCTTCGCCGTCGCCTGCTTCGACGGCGACATCTCCCACG
AGCTCTACAAGTCCAAAGCCGCCACCACGCAGCAGGATGGCACCGCCATT
TGGAACGAGTCCTTCAACATCGATCTCACCAACGAGATGAAGACCTACGA
GGCCGACAACCGCCCGCTGCCAAAGTACCTCACCCTCTTTCTGTTCGACA
CCGGCTCGCACGGCGTACCGTCGCTGGGCTCGGCCGGCATCCTGCTGTCC
AACGTGCACGAGAAGGGCCGATCCGCGGGCGACTTCCCGGTCGTCAACGG
CACCGGATCGCTTGCGCTCGTCGCCGAGTTGGAGAAAGCCGATAAAGGAG
GCTTCTTTCATTCCGACGCCGCCAAGATTACCGGCGCCGTGGCGGGCGCT
GGCGCCGCCGTCGGGCTGGGCGCTTTTGCGTTTAACAAGTACAAACAGAG
GAAGAAGAAACGAGCCGGAGAGGGCGAAGAGGGTGAAGAGCAGCAACAAG
ATCAATACGTAGAAGAGAACCGCCAAGAGCAACAACAGGAGCAACAAGCA
AATCGCCCGTGGTACGACCCGGAGACCAGCTCTGACGAGGACGATGAAAC
CGCCGTGCTTGCGGGCCAGACTGGTGACACATATGCACAACAAACGCATG
CTCCCGTTAGTGCTTATCACGCTCCTCAAGCTGCGTACGCGTCGGGTGTT
CATGGAACCGAAGGCGAAGATGACGAAGACGACGACGATGAATGA
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protein sequence of Ggra1965.t1

>Ggra1965.t1 ID=Ggra1965.t1|Name=Ggra1965.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MAPLRLNIQITAAKGVGGVYPFAVACFDGDISHELYKSKAATTQQDGTAI
WNESFNIDLTNEMKTYEADNRPLPKYLTLFLFDTGSHGVPSLGSAGILLS
NVHEKGRSAGDFPVVNGTGSLALVAELEKADKGGFFHSDAAKITGAVAGA
GAAVGLGAFAFNKYKQRKKKRAGEGEEGEEQQQDQYVEENRQEQQQEQQA
NRPWYDPETSSDEDDETAVLAGQTGDTYAQQTHAPVSAYHAPQAAYASGV
HGTEGEDDEDDDDE*
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mRNA from alignment at tig00000925_pilon:42594..43388-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1965.t1 ID=Ggra1965.t1|Name=Ggra1965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000925_pilon:42594..43388- (Gracilaria gracilis GNS1m male)
ATGGCTCCGCTACGACTCAACATCCAAATCACCGCCGCCAAGGGCGTGGG
CGGCGTGTACCCCTTCGCCGTCGCCTGCTTCGACGGCGACATCTCCCACG
AGCTCTACAAGTCCAAAGCCGCCACCACGCAGCAGGATGGCACCGCCATT
TGGAACGAGTCCTTCAACATCGATCTCACCAACGAGATGAAGACCTACGA
GGCCGACAACCGCCCGCTGCCAAAGTACCTCACCCTCTTTCTGTTCGACA
CCGGCTCGCACGGCGTACCGTCGCTGGGCTCGGCCGGCATCCTGCTGTCC
AACGTGCACGAGAAGGGCCGATCCGCGGGCGACTTCCCGGTCGTCAACGG
CACCGGATCGCTTGCGCTCGTCGCCGAGTTGGAGAAAGCCGATAAAGGAG
GCTTCTTTCATTCCGACGCCGCCAAGATTACCGGCGCCGTGGCGGGCGCT
GGCGCCGCCGTCGGGCTGGGCGCTTTTGCGTTTAACAAGTACAAACAGAG
GAAGAAGAAACGAGCCGGAGAGGGCGAAGAGGGTGAAGAGCAGCAACAAG
ATCAATACGTAGAAGAGAACCGCCAAGAGCAACAACAGGAGCAACAAGCA
AATCGCCCGTGGTACGACCCGGAGACCAGCTCTGACGAGGACGATGAAAC
CGCCGTGCTTGCGGGCCAGACTGGTGACACATATGCACAACAAACGCATG
CTCCCGTTAGTGCTTATCACGCTCCTCAAGCTGCGTACGCGTCGGGTGTT
CATGGAACCGAAGGCGAAGATGACGAAGACGACGACGATGAATGA
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Coding sequence (CDS) from alignment at tig00000925_pilon:42594..43388-

>Ggra1965.t1 ID=Ggra1965.t1|Name=Ggra1965.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000925_pilon:42594..43388- (Gracilaria gracilis GNS1m male)
ATGGCTCCGCTACGACTCAACATCCAAATCACCGCCGCCAAGGGCGTGGG
CGGCGTGTACCCCTTCGCCGTCGCCTGCTTCGACGGCGACATCTCCCACG
AGCTCTACAAGTCCAAAGCCGCCACCACGCAGCAGGATGGCACCGCCATT
TGGAACGAGTCCTTCAACATCGATCTCACCAACGAGATGAAGACCTACGA
GGCCGACAACCGCCCGCTGCCAAAGTACCTCACCCTCTTTCTGTTCGACA
CCGGCTCGCACGGCGTACCGTCGCTGGGCTCGGCCGGCATCCTGCTGTCC
AACGTGCACGAGAAGGGCCGATCCGCGGGCGACTTCCCGGTCGTCAACGG
CACCGGATCGCTTGCGCTCGTCGCCGAGTTGGAGAAAGCCGATAAAGGAG
GCTTCTTTCATTCCGACGCCGCCAAGATTACCGGCGCCGTGGCGGGCGCT
GGCGCCGCCGTCGGGCTGGGCGCTTTTGCGTTTAACAAGTACAAACAGAG
GAAGAAGAAACGAGCCGGAGAGGGCGAAGAGGGTGAAGAGCAGCAACAAG
ATCAATACGTAGAAGAGAACCGCCAAGAGCAACAACAGGAGCAACAAGCA
AATCGCCCGTGGTACGACCCGGAGACCAGCTCTGACGAGGACGATGAAAC
CGCCGTGCTTGCGGGCCAGACTGGTGACACATATGCACAACAAACGCATG
CTCCCGTTAGTGCTTATCACGCTCCTCAAGCTGCGTACGCGTCGGGTGTT
CATGGAACCGAAGGCGAAGATGACGAAGACGACGACGATGAATGA
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