Ggra3237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3237.t1
Unique NameGgra3237.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:143228..145015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703857.1
Preferred nameSLC17A9
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08193,ko:K10398,ko:K12303
KEGG TC2.A.1.14,2.A.1.14.21
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009706,GO:0009941,GO:0009987,GO:0010028,GO:0015075,GO:0015144,GO:0015145,GO:0015229,GO:0015291,GO:0015318,GO:0015711,GO:0015749,GO:0015849,GO:0015882,GO:0016020,GO:0016021,GO:0016108,GO:0016116,GO:0016122,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034219,GO:0034220,GO:0034357,GO:0035461,GO:0042170,GO:0042651,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051119,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0071702,GO:0071704,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue3.56e-190
EggNOG OGsKOG2532@1|root,KOG2532@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryL
BRITEko00000,ko02000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3237Ggra3237Gracilaria gracilis GNS1m malegenetig00000922_pilon 143228..145015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1Ggra3237.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 143228..145015 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1.start1Ggra3237.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 143228..143230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1.CDS1Ggra3237.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 143228..144191 +
Ggra3237.t1.CDS2Ggra3237.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000922_pilon 144303..144672 +
Ggra3237.t1.CDS3Ggra3237.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000922_pilon 144853..145015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1.exon1Ggra3237.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 143228..144191 +
Ggra3237.t1.exon2Ggra3237.t1.exon2Gracilaria gracilis GNS1m maleexontig00000922_pilon 144303..144672 +
Ggra3237.t1.exon3Ggra3237.t1.exon3Gracilaria gracilis GNS1m maleexontig00000922_pilon 144853..145015 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1.intron1Ggra3237.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000922_pilon 144192..144302 +
Ggra3237.t1.intron2Ggra3237.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000922_pilon 144673..144852 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3237.t1.stop1Ggra3237.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 145013..145015 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3237.t1 ID=Ggra3237.t1|Name=Ggra3237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MSASVNHKRIRFPFGFVPQFILPLRIPNNSRTRTVLPFHTSRPIRMPRPG
VLVSSMRDSRADVESNDSVDEPRTAASKFSMSNVPERLRVVFLCFISFVI
CNCDRINISVAILPMAKFYGWNQTTVGIIQSAFFWGYVLTQIPGGYFADK
YGGKHVLAAGVIVWSAMTLVTPLAASSNLGLLLLARALLGVGEGVAMPAM
NNIISKWVPEKERARSLSLTYSGMYLGSVIGLWLCPQFIVSFGWQSVFYI
FGAFGFVWWFAWQGMATSTPQLSSTISAEELQYIESGSPGVKKEVSNVPW
RLLFSKKATWAIIVAHFCATWGYFVLLIWLPTYFNRQLGFDLAASSFLSI
LPWMAMFVSANVGGLIADALRSRGMSLTAVRKTMQSIGFLGPAVFLALVA
ITDTPSLAVFFMTSALALGSFSQSGVYSNHQDIGPAYSGILLGISNTGAA
IPGIVGVALTGFILDATGSWKLVFAIAIFFYLLGTVVYNLLGTGERVF*
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spliced messenger RNA

>Ggra3237.t1 ID=Ggra3237.t1|Name=Ggra3237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000922_pilon:143228..145015+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCAGCGTAAATCACAAGCGAATTAGGTTTCCCTTCGGTTTTGT
GCCTCAATTTATCTTGCCCCTGCGAATCCCGAACAATTCTAGAACGAGAA
CCGTTCTTCCCTTCCACACATCTCGTCCCATTCGAATGCCGCGCCCCGGA
GTTCTTGTTTCATCAATGAGAGATAGTCGTGCCGATGTGGAGTCAAATGA
TAGTGTAGACGAACCTCGTACTGCAGCATCAAAATTCAGTATGAGCAATG
TGCCGGAGCGGCTTCGTGTTGTGTTTCTTTGTTTCATATCTTTCGTCATC
TGCAATTGCGATCGCATAAATATTTCGGTCGCCATTCTCCCGATGGCCAA
GTTTTATGGATGGAACCAAACAACCGTTGGAATTATACAATCCGCTTTTT
TCTGGGGGTACGTTTTGACGCAGATTCCAGGAGGCTACTTCGCAGACAAA
TACGGTGGGAAGCATGTCTTGGCCGCAGGTGTCATTGTCTGGTCAGCGAT
GACTTTAGTCACACCGCTTGCAGCATCCTCAAATCTTGGTTTACTGCTTC
TTGCAAGAGCTCTTCTTGGTGTGGGCGAGGGGGTAGCTATGCCGGCGATG
AACAACATTATATCGAAATGGGTTCCTGAAAAAGAAAGAGCGCGATCATT
GTCTCTGACCTACAGCGGCATGTATCTTGGCTCCGTAATTGGTTTATGGC
TATGTCCACAGTTCATTGTTTCCTTCGGGTGGCAAAGCGTGTTCTACATC
TTTGGGGCATTTGGTTTCGTGTGGTGGTTTGCATGGCAGGGTATGGCCAC
CAGCACTCCGCAGCTCTCTTCCACCATATCCGCGGAAGAACTGCAATATA
TTGAATCAGGATCCCCTGGTGTCAAGAAGGAAGTATCTAATGTTCCCTGG
CGCCTTTTGTTCAGCAAGAAAGCAACGTGGGCAATCATTGTTGCACATTT
CTGCGCAACCTGGGGGTACTTTGTGCTGCTTATATGGCTTCCAACTTACT
TCAATCGCCAGCTTGGGTTCGATCTCGCTGCTTCGTCTTTTCTGTCAATT
TTACCATGGATGGCCATGTTTGTTTCGGCGAATGTGGGCGGTCTTATAGC
CGACGCCTTAAGATCCAGAGGGATGTCTTTGACAGCGGTCCGAAAGACCA
TGCAGTCAATCGGGTTTCTTGGTCCAGCAGTTTTCCTCGCACTAGTTGCG
ATAACTGATACACCTTCCTTGGCTGTGTTTTTCATGACTTCTGCGCTGGC
ATTGGGTTCATTCTCACAGAGTGGGGTATATTCCAACCATCAGGACATTG
GGCCCGCATACTCTGGGATCTTGCTAGGCATCAGTAACACAGGTGCGGCC
ATACCAGGAATTGTTGGCGTAGCCCTCACCGGGTTCATTCTTGACGCCAC
CGGCTCGTGGAAGCTTGTCTTTGCGATCGCCATTTTCTTTTATTTGCTGG
GGACGGTGGTTTACAACTTACTCGGCACTGGTGAGCGTGTCTTTTGA
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protein sequence of Ggra3237.t1

>Ggra3237.t1 ID=Ggra3237.t1|Name=Ggra3237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MSASVNHKRIRFPFGFVPQFILPLRIPNNSRTRTVLPFHTSRPIRMPRPG
VLVSSMRDSRADVESNDSVDEPRTAASKFSMSNVPERLRVVFLCFISFVI
CNCDRINISVAILPMAKFYGWNQTTVGIIQSAFFWGYVLTQIPGGYFADK
YGGKHVLAAGVIVWSAMTLVTPLAASSNLGLLLLARALLGVGEGVAMPAM
NNIISKWVPEKERARSLSLTYSGMYLGSVIGLWLCPQFIVSFGWQSVFYI
FGAFGFVWWFAWQGMATSTPQLSSTISAEELQYIESGSPGVKKEVSNVPW
RLLFSKKATWAIIVAHFCATWGYFVLLIWLPTYFNRQLGFDLAASSFLSI
LPWMAMFVSANVGGLIADALRSRGMSLTAVRKTMQSIGFLGPAVFLALVA
ITDTPSLAVFFMTSALALGSFSQSGVYSNHQDIGPAYSGILLGISNTGAA
IPGIVGVALTGFILDATGSWKLVFAIAIFFYLLGTVVYNLLGTGERVF*
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mRNA from alignment at tig00000922_pilon:143228..145015+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3237.t1 ID=Ggra3237.t1|Name=Ggra3237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000922_pilon:143228..145015+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCAGCGTAAATCACAAGCGAATTAGGTTTCCCTTCGGTTTTGT
GCCTCAATTTATCTTGCCCCTGCGAATCCCGAACAATTCTAGAACGAGAA
CCGTTCTTCCCTTCCACACATCTCGTCCCATTCGAATGCCGCGCCCCGGA
GTTCTTGTTTCATCAATGAGAGATAGTCGTGCCGATGTGGAGTCAAATGA
TAGTGTAGACGAACCTCGTACTGCAGCATCAAAATTCAGTATGAGCAATG
TGCCGGAGCGGCTTCGTGTTGTGTTTCTTTGTTTCATATCTTTCGTCATC
TGCAATTGCGATCGCATAAATATTTCGGTCGCCATTCTCCCGATGGCCAA
GTTTTATGGATGGAACCAAACAACCGTTGGAATTATACAATCCGCTTTTT
TCTGGGGGTACGTTTTGACGCAGATTCCAGGAGGCTACTTCGCAGACAAA
TACGGTGGGAAGCATGTCTTGGCCGCAGGTGTCATTGTCTGGTCAGCGAT
GACTTTAGTCACACCGCTTGCAGCATCCTCAAATCTTGGTTTACTGCTTC
TTGCAAGAGCTCTTCTTGGTGTGGGCGAGGGGGTAGCTATGCCGGCGATG
AACAACATTATATCGAAATGGGTTCCTGAAAAAGAAAGAGCGCGATCATT
GTCTCTGACCTACAGCGGCATGTATCTTGGCTCCGTAATTGGTTTATGGC
TATGTCCACAGTTCATTGTTTCCTTCGGGTGGCAAAGCGTGTTCTACATC
TTTGGGGCATTTGGTTTCGTGTGGTGGTTTGCATGGCAGGGTATGGCCAC
CAGCACTCCGCAGCTCTCTTCCACCATATCCGCGGAAGAACTGCAATATA
TTGAATCAGGATCCCCTGGTGTCAAGAAGGAAGTATCTAATGTTCCCTGG
CGCCTTTTGTTCAGCAAGAAAGCAACGTGGGCAATCATTGTTGCACATTT
CTGCGCAACCTGGGGTAAGTTTTTATGGCTCTTCCGGACAGAATGGTACT
CCAACCTTCCTCCATTTGATAATTAAGCGTGTCAGACTGCTAACCGTTGA
AGTGTGCGATGGCTTTGCGAAACAGGGTACTTTGTGCTGCTTATATGGCT
TCCAACTTACTTCAATCGCCAGCTTGGGTTCGATCTCGCTGCTTCGTCTT
TTCTGTCAATTTTACCATGGATGGCCATGTTTGTTTCGGCGAATGTGGGC
GGTCTTATAGCCGACGCCTTAAGATCCAGAGGGATGTCTTTGACAGCGGT
CCGAAAGACCATGCAGTCAATCGGGTTTCTTGGTCCAGCAGTTTTCCTCG
CACTAGTTGCGATAACTGATACACCTTCCTTGGCTGTGTTTTTCATGACT
TCTGCGCTGGCATTGGGTTCATTCTCACAGAGTGGGGTATATTCCAACCA
TCAGGACATTGGGCCCGCATACTCTGGGATCTTGCTAGGCATCAGGTGAG
TTCACCCCTCAATTTAGGAGCGGTACAATGAGATGTCGCTTCAAAACCGA
AGTCGCTGTCGAACACATCCAGATAGTTAATGTGCCGCATTTTTGTCTTC
GATATTGGACCGGACCACCCAGCTGCTAACAAGTATTAATCGCCTCGTCT
TTCTCCTTTCTTTTGAATATCATAGTAACACAGGTGCGGCCATACCAGGA
ATTGTTGGCGTAGCCCTCACCGGGTTCATTCTTGACGCCACCGGCTCGTG
GAAGCTTGTCTTTGCGATCGCCATTTTCTTTTATTTGCTGGGGACGGTGG
TTTACAACTTACTCGGCACTGGTGAGCGTGTCTTTTGA
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Coding sequence (CDS) from alignment at tig00000922_pilon:143228..145015+

>Ggra3237.t1 ID=Ggra3237.t1|Name=Ggra3237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000922_pilon:143228..145015+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCAGCGTAAATCACAAGCGAATTAGGTTTCCCTTCGGTTTTGT
GCCTCAATTTATCTTGCCCCTGCGAATCCCGAACAATTCTAGAACGAGAA
CCGTTCTTCCCTTCCACACATCTCGTCCCATTCGAATGCCGCGCCCCGGA
GTTCTTGTTTCATCAATGAGAGATAGTCGTGCCGATGTGGAGTCAAATGA
TAGTGTAGACGAACCTCGTACTGCAGCATCAAAATTCAGTATGAGCAATG
TGCCGGAGCGGCTTCGTGTTGTGTTTCTTTGTTTCATATCTTTCGTCATC
TGCAATTGCGATCGCATAAATATTTCGGTCGCCATTCTCCCGATGGCCAA
GTTTTATGGATGGAACCAAACAACCGTTGGAATTATACAATCCGCTTTTT
TCTGGGGGTACGTTTTGACGCAGATTCCAGGAGGCTACTTCGCAGACAAA
TACGGTGGGAAGCATGTCTTGGCCGCAGGTGTCATTGTCTGGTCAGCGAT
GACTTTAGTCACACCGCTTGCAGCATCCTCAAATCTTGGTTTACTGCTTC
TTGCAAGAGCTCTTCTTGGTGTGGGCGAGGGGGTAGCTATGCCGGCGATG
AACAACATTATATCGAAATGGGTTCCTGAAAAAGAAAGAGCGCGATCATT
GTCTCTGACCTACAGCGGCATGTATCTTGGCTCCGTAATTGGTTTATGGC
TATGTCCACAGTTCATTGTTTCCTTCGGGTGGCAAAGCGTGTTCTACATC
TTTGGGGCATTTGGTTTCGTGTGGTGGTTTGCATGGCAGGGTATGGCCAC
CAGCACTCCGCAGCTCTCTTCCACCATATCCGCGGAAGAACTGCAATATA
TTGAATCAGGATCCCCTGGTGTCAAGAAGGAAGTATCTAATGTTCCCTGG
CGCCTTTTGTTCAGCAAGAAAGCAACGTGGGCAATCATTGTTGCACATTT
CTGCGCAACCTGGGGGTACTTTGTGCTGCTTATATGGCTTCCAACTTACT
TCAATCGCCAGCTTGGGTTCGATCTCGCTGCTTCGTCTTTTCTGTCAATT
TTACCATGGATGGCCATGTTTGTTTCGGCGAATGTGGGCGGTCTTATAGC
CGACGCCTTAAGATCCAGAGGGATGTCTTTGACAGCGGTCCGAAAGACCA
TGCAGTCAATCGGGTTTCTTGGTCCAGCAGTTTTCCTCGCACTAGTTGCG
ATAACTGATACACCTTCCTTGGCTGTGTTTTTCATGACTTCTGCGCTGGC
ATTGGGTTCATTCTCACAGAGTGGGGTATATTCCAACCATCAGGACATTG
GGCCCGCATACTCTGGGATCTTGCTAGGCATCAGTAACACAGGTGCGGCC
ATACCAGGAATTGTTGGCGTAGCCCTCACCGGGTTCATTCTTGACGCCAC
CGGCTCGTGGAAGCTTGTCTTTGCGATCGCCATTTTCTTTTATTTGCTGG
GGACGGTGGTTTACAACTTACTCGGCACTGGTGAGCGTGTCTTTTGA
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