Ggra3224.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3224.t1
Unique NameGgra3224.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:115491..116333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3224Ggra3224Gracilaria gracilis GNS1m malegenetig00000922_pilon 115491..116333 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3224.t1.start1Ggra3224.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 115491..115493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3224.t1.CDS1Ggra3224.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 115491..116333 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3224.t1.exon1Ggra3224.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 115491..116333 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3224.t1.stop1Ggra3224.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 116331..116333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3224.t1Ggra3224.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 115491..116333 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3224.t1 ID=Ggra3224.t1|Name=Ggra3224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MFPKSFKLAQRSRIGVANLVPYFILVAFPIALILKDGLISPTPFVLNRFY
RQKPYLNVITLIYGQENDHVNIAHNCRVISKTPHKFFIHTDDISQPYCTV
CQCVRYDLFQCPCPTGSDGCKLKNPCEKVEFLIQSLNTYGSFLFLDNDLL
IMKPEFLDHMLQRSRAHDFLASYAHQTVNSSRYLRNFNSGLMFIRRVPGV
DYNLLRASLYFHKLEQDQGIVSDFFQKMYTNWDSLSWKWHCRSLKRTNQD
VPPENCYTIHDRSEVGGLLKEINETRLTIP*
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spliced messenger RNA

>Ggra3224.t1 ID=Ggra3224.t1|Name=Ggra3224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000922_pilon:115491..116333+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCGAAGTCTTTCAAGCTTGCTCAACGGTCCAGAATCGGTGTTGC
TAATTTGGTTCCGTACTTCATCCTGGTTGCGTTCCCAATTGCCCTCATTC
TCAAAGATGGTTTGATTTCGCCGACCCCCTTTGTCCTAAATCGCTTCTAC
AGACAGAAACCCTACCTCAATGTTATTACGCTGATATACGGCCAGGAGAA
CGATCATGTTAACATTGCTCATAACTGCCGTGTCATCTCTAAAACACCTC
ACAAATTCTTCATCCACACTGATGATATATCTCAACCGTACTGCACCGTT
TGTCAATGCGTTCGCTACGATCTTTTCCAATGCCCATGTCCTACTGGTTC
AGACGGTTGCAAATTGAAGAATCCTTGCGAGAAGGTTGAATTTCTGATAC
AAAGTTTGAACACGTATGGTTCGTTCTTGTTTCTTGACAACGATCTGTTG
ATCATGAAACCAGAGTTTCTGGATCATATGCTGCAGCGATCCCGAGCACA
TGACTTTCTTGCGTCGTATGCACATCAAACCGTCAACTCAAGCAGGTATT
TAAGAAACTTTAATAGCGGACTCATGTTCATTCGTCGTGTGCCAGGTGTG
GATTACAACTTATTGAGAGCCTCGCTTTACTTTCATAAGCTGGAACAAGA
CCAAGGCATTGTTAGCGACTTTTTCCAGAAGATGTATACAAACTGGGATT
CCTTGTCTTGGAAGTGGCACTGTCGAAGCTTGAAACGGACAAATCAGGAT
GTTCCCCCGGAGAACTGTTATACAATTCATGACCGAAGCGAAGTGGGAGG
TTTACTGAAAGAGATAAACGAGACACGGCTTACAATTCCGTAG
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protein sequence of Ggra3224.t1

>Ggra3224.t1 ID=Ggra3224.t1|Name=Ggra3224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MFPKSFKLAQRSRIGVANLVPYFILVAFPIALILKDGLISPTPFVLNRFY
RQKPYLNVITLIYGQENDHVNIAHNCRVISKTPHKFFIHTDDISQPYCTV
CQCVRYDLFQCPCPTGSDGCKLKNPCEKVEFLIQSLNTYGSFLFLDNDLL
IMKPEFLDHMLQRSRAHDFLASYAHQTVNSSRYLRNFNSGLMFIRRVPGV
DYNLLRASLYFHKLEQDQGIVSDFFQKMYTNWDSLSWKWHCRSLKRTNQD
VPPENCYTIHDRSEVGGLLKEINETRLTIP*
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mRNA from alignment at tig00000922_pilon:115491..116333+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3224.t1 ID=Ggra3224.t1|Name=Ggra3224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000922_pilon:115491..116333+ (Gracilaria gracilis GNS1m male)
ATGTTTCCGAAGTCTTTCAAGCTTGCTCAACGGTCCAGAATCGGTGTTGC
TAATTTGGTTCCGTACTTCATCCTGGTTGCGTTCCCAATTGCCCTCATTC
TCAAAGATGGTTTGATTTCGCCGACCCCCTTTGTCCTAAATCGCTTCTAC
AGACAGAAACCCTACCTCAATGTTATTACGCTGATATACGGCCAGGAGAA
CGATCATGTTAACATTGCTCATAACTGCCGTGTCATCTCTAAAACACCTC
ACAAATTCTTCATCCACACTGATGATATATCTCAACCGTACTGCACCGTT
TGTCAATGCGTTCGCTACGATCTTTTCCAATGCCCATGTCCTACTGGTTC
AGACGGTTGCAAATTGAAGAATCCTTGCGAGAAGGTTGAATTTCTGATAC
AAAGTTTGAACACGTATGGTTCGTTCTTGTTTCTTGACAACGATCTGTTG
ATCATGAAACCAGAGTTTCTGGATCATATGCTGCAGCGATCCCGAGCACA
TGACTTTCTTGCGTCGTATGCACATCAAACCGTCAACTCAAGCAGGTATT
TAAGAAACTTTAATAGCGGACTCATGTTCATTCGTCGTGTGCCAGGTGTG
GATTACAACTTATTGAGAGCCTCGCTTTACTTTCATAAGCTGGAACAAGA
CCAAGGCATTGTTAGCGACTTTTTCCAGAAGATGTATACAAACTGGGATT
CCTTGTCTTGGAAGTGGCACTGTCGAAGCTTGAAACGGACAAATCAGGAT
GTTCCCCCGGAGAACTGTTATACAATTCATGACCGAAGCGAAGTGGGAGG
TTTACTGAAAGAGATAAACGAGACACGGCTTACAATTCCGTAG
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Coding sequence (CDS) from alignment at tig00000922_pilon:115491..116333+

>Ggra3224.t1 ID=Ggra3224.t1|Name=Ggra3224.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000922_pilon:115491..116333+ (Gracilaria gracilis GNS1m male)
ATGTTTCCGAAGTCTTTCAAGCTTGCTCAACGGTCCAGAATCGGTGTTGC
TAATTTGGTTCCGTACTTCATCCTGGTTGCGTTCCCAATTGCCCTCATTC
TCAAAGATGGTTTGATTTCGCCGACCCCCTTTGTCCTAAATCGCTTCTAC
AGACAGAAACCCTACCTCAATGTTATTACGCTGATATACGGCCAGGAGAA
CGATCATGTTAACATTGCTCATAACTGCCGTGTCATCTCTAAAACACCTC
ACAAATTCTTCATCCACACTGATGATATATCTCAACCGTACTGCACCGTT
TGTCAATGCGTTCGCTACGATCTTTTCCAATGCCCATGTCCTACTGGTTC
AGACGGTTGCAAATTGAAGAATCCTTGCGAGAAGGTTGAATTTCTGATAC
AAAGTTTGAACACGTATGGTTCGTTCTTGTTTCTTGACAACGATCTGTTG
ATCATGAAACCAGAGTTTCTGGATCATATGCTGCAGCGATCCCGAGCACA
TGACTTTCTTGCGTCGTATGCACATCAAACCGTCAACTCAAGCAGGTATT
TAAGAAACTTTAATAGCGGACTCATGTTCATTCGTCGTGTGCCAGGTGTG
GATTACAACTTATTGAGAGCCTCGCTTTACTTTCATAAGCTGGAACAAGA
CCAAGGCATTGTTAGCGACTTTTTCCAGAAGATGTATACAAACTGGGATT
CCTTGTCTTGGAAGTGGCACTGTCGAAGCTTGAAACGGACAAATCAGGAT
GTTCCCCCGGAGAACTGTTATACAATTCATGACCGAAGCGAAGTGGGAGG
TTTACTGAAAGAGATAAACGAGACACGGCTTACAATTCCGTAG
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