Ggra6409.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6409.t1
Unique NameGgra6409.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length96
Homology
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A2V3J6U9 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U9_9FLOR)

HSP 1 Score: 176 bits (446), Expect = 9.290e-56
Identity = 84/94 (89.36%), Postives = 91/94 (96.81%), Query Frame = 0
Query:    1 MSAKESNPIPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPP 94
            MS+K SNP+PQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVN++LEDVTEYEYS EGT+KKQL+KILLNGSNVCLLVPGSEGP+KS P
Sbjct:    1 MSSKHSNPVPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNMILEDVTEYEYSAEGTSKKQLEKILLNGSNVCLLVPGSEGPEKSVP 94          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A5J4YIW5 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIW5_PORPP)

HSP 1 Score: 130 bits (328), Expect = 1.100e-37
Identity = 57/83 (68.67%), Postives = 74/83 (89.16%), Query Frame = 0
Query:   12 ILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPP 94
            ILPLE++D+CIGSRIWI+MRGE+E VGTLRGFD+FVN+VLEDVTEYE + +G   ++LD+I+LNG ++C++VPGSEGPD S P
Sbjct:   18 ILPLEMIDRCIGSRIWIVMRGEREFVGTLRGFDDFVNVVLEDVTEYEETSDGLQVRKLDQIMLNGIHICMMVPGSEGPDHSIP 100          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A6B2LTU4 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LTU4_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 8.760e-37
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 0
Query:    1 MSAKESNPIPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGT-TKKQLDKILLNGSNVCLLVPGSEGP 89
            M    + PI Q+LPLEL+DKCIG ++WIIM+G+KE+VGTL GFD+FVN+VLEDVTE+E S +G  T+ +LD+ILLNG+NVCLLVPG EGP
Sbjct:    1 MDPNANAPISQLLPLELIDKCIGHKLWIIMKGDKEIVGTLMGFDDFVNMVLEDVTEFETSADGRITETKLDQILLNGNNVCLLVPGGEGP 90          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A146H867 (U6 snRNA-associated Sm-like protein LSm5 n=5 Tax=Mycena TaxID=41247 RepID=A0A146H867_9AGAR)

HSP 1 Score: 127 bits (319), Expect = 1.520e-36
Identity = 55/80 (68.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPD 90
            QILPLEL+DKCIGSRIW+IM+ ++E  GTL GFD+FVN+VLEDVTEYE + +G TKK L++ LLNG+N+C+L+PGSEGP+
Sbjct:    4 QILPLELIDKCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGRTKKSLEQTLLNGNNICMLIPGSEGPN 83          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A7S1ERV8 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERV8_9RHOD)

HSP 1 Score: 128 bits (321), Expect = 1.530e-36
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 0
Query:   12 ILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDKS 92
            +LPLEL+DKCIGS+IWIIMR EKE VGTLRGFDEFVN+VLEDVTE+E + EG    +LD+I LNG+NVC+L+PGSEGP  S
Sbjct:   19 VLPLELIDKCIGSKIWIIMRNEKEFVGTLRGFDEFVNLVLEDVTEFESTMEGVLVNKLDQIFLNGNNVCMLLPGSEGPTYS 99          
BLAST of Ggra6409.t1 vs. uniprot
Match: F0ZMN3 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMN3_DICPU)

HSP 1 Score: 125 bits (315), Expect = 8.050e-36
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 0
Query:    1 MSAKESNPIPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGP 89
            MS + S  I QILPLEL++KCIGSRIWI M+ +KE VGTL GFD +VNI L+DVTEYEY+ EG    +LD ILLNG++VCLLVPG EGP
Sbjct:    1 MSEEASTQIEQILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTIKLDNILLNGNHVCLLVPGGEGP 89          
BLAST of Ggra6409.t1 vs. uniprot
Match: M2W0E5 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W0E5_GALSU)

HSP 1 Score: 124 bits (312), Expect = 2.110e-35
Identity = 53/87 (60.92%), Postives = 73/87 (83.91%), Query Frame = 0
Query:    6 SNPIPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDKS 92
            S  IP +LPLELVDKCIGS+IW++M+ +KE  G LRGFD+FVN+VLEDV+EYE++ EG  +  LD+ILLNG+N+C+L+PG  GP+++
Sbjct:    2 SETIPPVLPLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGLIRTHLDQILLNGNNICVLIPGGAGPNET 88          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A067QBH7 (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Agaricomycetidae TaxID=452333 RepID=A0A067QBH7_9AGAM)

HSP 1 Score: 124 bits (311), Expect = 2.590e-35
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDK 91
            QILPLEL+D+CIGSRIW+IM+ E+E  GTL GFD+FVN+VLEDVTEYE + EGT K +L++ LLNG+N+C+L+PGS GP++
Sbjct:    4 QILPLELIDRCIGSRIWVIMKNEREFSGTLLGFDDFVNMVLEDVTEYETTPEGTKKTKLNQTLLNGNNICMLIPGSSGPEE 84          
BLAST of Ggra6409.t1 vs. uniprot
Match: A0A1Q3EFV7 (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EFV7_LENED)

HSP 1 Score: 124 bits (311), Expect = 2.590e-35
Identity = 52/80 (65.00%), Postives = 70/80 (87.50%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPD 90
            Q+LPLEL+DKCIGSRIW++M+ E+E  GTL GFD+FVN+VLEDVTEYE + +GT K +L + LLNG+N+C+L+PGS+GP+
Sbjct:    4 QVLPLELIDKCIGSRIWVVMKSEREFTGTLLGFDDFVNMVLEDVTEYEMTPQGTKKTKLGQTLLNGNNICMLIPGSDGPE 83          
BLAST of Ggra6409.t1 vs. uniprot
Match: I4Y6Y4 (U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=Wallemia TaxID=148959 RepID=I4Y6Y4_WALMC)

HSP 1 Score: 123 bits (308), Expect = 8.110e-35
Identity = 56/81 (69.14%), Postives = 72/81 (88.89%), Query Frame = 0
Query:   11 QILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIVLEDVTEYEYSEEGTTKK-QLDKILLNGSNVCLLVPGSEGPD 90
            QILPLEL+DKCIGSRIW+IM+ E+E VGTL+GFD+FVN+VL+DVTEY+ S +GT KK +L + LLNG+NVC+L+PG EGP+
Sbjct:    4 QILPLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTEYDISPDGTQKKSKLRQTLLNGNNVCMLLPGGEGPE 84          
The following BLAST results are available for this feature:
BLAST of Ggra6409.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6U99.290e-5689.36U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=G... [more]
A0A5J4YIW51.100e-3768.67U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A6B2LTU48.760e-3766.67U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
A0A146H8671.520e-3668.75U6 snRNA-associated Sm-like protein LSm5 n=5 Tax=M... [more]
A0A7S1ERV81.530e-3672.84U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
F0ZMN38.050e-3667.42U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=D... [more]
M2W0E52.110e-3560.92U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=G... [more]
A0A067QBH72.590e-3566.67U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=A... [more]
A0A1Q3EFV72.590e-3565.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=L... [more]
I4Y6Y48.110e-3569.14U6 snRNA-associated Sm-like protein LSm5 n=6 Tax=W... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 16..84
e-value: 9.6E-21
score: 84.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 17..84
e-value: 4.6E-21
score: 74.3
NoneNo IPR availableGENE3D2.30.30.100coord: 13..88
e-value: 1.7E-27
score: 97.0
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 7..91
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 11..85
e-value: 2.611E-45
score: 138.531
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:93053..93428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6409.t1Ggra6409.t1Gracilaria gracilis GNS1m malemRNAtig00000918_pilon 93053..93428 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6409.t1 ID=Ggra6409.t1|Name=Ggra6409.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=96bp
MSAKESNPIPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIV
LEDVTEYEYSEEGTTKKQLDKILLNGSNVCLLVPGSEGPDKSPPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf