Ggra6405.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6405.t1
Unique NameGgra6405.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:84580..85557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ023CT
Preferred nameMETTL6
PFAMsMethyltransf_12,Methyltransf_23
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00113,RC00392,RC00460,RC01244
KEGG koko:K00587,ko:K00599,ko:K09140
KEGG ReactionR02671,R02912,R03955,R04496,R04939
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001510,GO:0002946,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue3.69e-43
EggNOG OGsKOG2361@1|root,KOG2361@2759|Eukaryota
EC2.1.1.100
DescriptiontRNA (cytosine) methyltransferase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6405Ggra6405Gracilaria gracilis GNS1m malegenetig00000918_pilon 84580..85557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6405.t1.start1Ggra6405.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 84580..84582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6405.t1.CDS1Ggra6405.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 84580..85557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6405.t1.exon1Ggra6405.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 84580..85557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6405.t1.stop1Ggra6405.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 85555..85557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6405.t1Ggra6405.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 84580..85557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6405.t1 ID=Ggra6405.t1|Name=Ggra6405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MPDPHDKQLLPRSGLERNCSPKPPIHYGEARGARKRARAEQTKARHKANA
DRAAELAKPPSSAAQAAERWDAFYETKPTLFKDRHILRAAFPELVGPHAA
ANPAAHVPPLSPIPEESRADCTMSSQCDQVVVEVGCGGGNAVYPLLRANP
RLFAFAFDFSALAVELTKSSVEYREDRIIAFQADVTVPGSYLDLIRSKHP
DGVHFVTALWTLSALSPSQQSIAATGLATLLADGGQLFVRDYATGDMREK
RFAEREQHVHDGSGKLYLRGDGTYAYFFSQEELKELFEAVGLTCVSCEYE
DRIVNNHKTQSKMQRRWVQAKFRKG*
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spliced messenger RNA

>Ggra6405.t1 ID=Ggra6405.t1|Name=Ggra6405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000918_pilon:84580..85557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACCCTCACGACAAGCAACTACTGCCGCGTTCTGGCCTTGAACG
AAATTGCTCACCGAAACCGCCAATTCACTACGGAGAAGCCCGCGGAGCTC
GGAAGCGAGCAAGAGCCGAGCAGACCAAAGCGCGACACAAAGCCAATGCA
GATCGAGCGGCCGAGCTAGCCAAACCACCGAGTTCCGCCGCACAAGCCGC
CGAAAGATGGGATGCTTTCTACGAAACGAAACCTACGCTATTCAAGGACC
GTCACATTCTGCGCGCTGCATTCCCAGAGCTGGTCGGTCCTCATGCGGCT
GCGAATCCTGCCGCGCATGTACCGCCTTTGTCTCCAATACCTGAAGAATC
ACGTGCAGATTGTACAATGAGTTCGCAGTGTGATCAAGTTGTAGTAGAAG
TTGGTTGTGGTGGTGGGAACGCCGTATATCCTTTGCTGCGTGCGAATCCG
CGATTATTTGCTTTTGCATTCGACTTTAGTGCTCTGGCCGTTGAGCTCAC
GAAGAGCAGCGTTGAGTATCGTGAAGATAGAATCATAGCCTTTCAGGCGG
ATGTCACGGTTCCTGGGAGCTACCTAGACTTGATCAGAAGCAAACACCCC
GACGGAGTTCACTTCGTGACAGCGCTCTGGACATTGTCTGCTCTAAGCCC
CTCTCAACAGAGCATCGCTGCCACCGGATTGGCAACGCTGCTCGCGGATG
GTGGCCAGCTGTTTGTTCGAGATTACGCGACTGGAGATATGAGGGAAAAG
CGGTTTGCTGAGCGTGAACAACACGTACACGACGGTTCAGGTAAACTATA
CCTACGTGGCGACGGGACATACGCCTACTTCTTCAGTCAAGAGGAGTTGA
AAGAGCTTTTTGAGGCCGTGGGGTTGACCTGTGTCTCGTGCGAATATGAA
GACCGGATTGTAAACAACCATAAGACACAGTCAAAGATGCAAAGAAGATG
GGTGCAAGCGAAGTTTAGGAAAGGATAA
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protein sequence of Ggra6405.t1

>Ggra6405.t1 ID=Ggra6405.t1|Name=Ggra6405.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MPDPHDKQLLPRSGLERNCSPKPPIHYGEARGARKRARAEQTKARHKANA
DRAAELAKPPSSAAQAAERWDAFYETKPTLFKDRHILRAAFPELVGPHAA
ANPAAHVPPLSPIPEESRADCTMSSQCDQVVVEVGCGGGNAVYPLLRANP
RLFAFAFDFSALAVELTKSSVEYREDRIIAFQADVTVPGSYLDLIRSKHP
DGVHFVTALWTLSALSPSQQSIAATGLATLLADGGQLFVRDYATGDMREK
RFAEREQHVHDGSGKLYLRGDGTYAYFFSQEELKELFEAVGLTCVSCEYE
DRIVNNHKTQSKMQRRWVQAKFRKG*
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mRNA from alignment at tig00000918_pilon:84580..85557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6405.t1 ID=Ggra6405.t1|Name=Ggra6405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000918_pilon:84580..85557+ (Gracilaria gracilis GNS1m male)
ATGCCCGACCCTCACGACAAGCAACTACTGCCGCGTTCTGGCCTTGAACG
AAATTGCTCACCGAAACCGCCAATTCACTACGGAGAAGCCCGCGGAGCTC
GGAAGCGAGCAAGAGCCGAGCAGACCAAAGCGCGACACAAAGCCAATGCA
GATCGAGCGGCCGAGCTAGCCAAACCACCGAGTTCCGCCGCACAAGCCGC
CGAAAGATGGGATGCTTTCTACGAAACGAAACCTACGCTATTCAAGGACC
GTCACATTCTGCGCGCTGCATTCCCAGAGCTGGTCGGTCCTCATGCGGCT
GCGAATCCTGCCGCGCATGTACCGCCTTTGTCTCCAATACCTGAAGAATC
ACGTGCAGATTGTACAATGAGTTCGCAGTGTGATCAAGTTGTAGTAGAAG
TTGGTTGTGGTGGTGGGAACGCCGTATATCCTTTGCTGCGTGCGAATCCG
CGATTATTTGCTTTTGCATTCGACTTTAGTGCTCTGGCCGTTGAGCTCAC
GAAGAGCAGCGTTGAGTATCGTGAAGATAGAATCATAGCCTTTCAGGCGG
ATGTCACGGTTCCTGGGAGCTACCTAGACTTGATCAGAAGCAAACACCCC
GACGGAGTTCACTTCGTGACAGCGCTCTGGACATTGTCTGCTCTAAGCCC
CTCTCAACAGAGCATCGCTGCCACCGGATTGGCAACGCTGCTCGCGGATG
GTGGCCAGCTGTTTGTTCGAGATTACGCGACTGGAGATATGAGGGAAAAG
CGGTTTGCTGAGCGTGAACAACACGTACACGACGGTTCAGGTAAACTATA
CCTACGTGGCGACGGGACATACGCCTACTTCTTCAGTCAAGAGGAGTTGA
AAGAGCTTTTTGAGGCCGTGGGGTTGACCTGTGTCTCGTGCGAATATGAA
GACCGGATTGTAAACAACCATAAGACACAGTCAAAGATGCAAAGAAGATG
GGTGCAAGCGAAGTTTAGGAAAGGATAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:84580..85557+

>Ggra6405.t1 ID=Ggra6405.t1|Name=Ggra6405.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000918_pilon:84580..85557+ (Gracilaria gracilis GNS1m male)
ATGCCCGACCCTCACGACAAGCAACTACTGCCGCGTTCTGGCCTTGAACG
AAATTGCTCACCGAAACCGCCAATTCACTACGGAGAAGCCCGCGGAGCTC
GGAAGCGAGCAAGAGCCGAGCAGACCAAAGCGCGACACAAAGCCAATGCA
GATCGAGCGGCCGAGCTAGCCAAACCACCGAGTTCCGCCGCACAAGCCGC
CGAAAGATGGGATGCTTTCTACGAAACGAAACCTACGCTATTCAAGGACC
GTCACATTCTGCGCGCTGCATTCCCAGAGCTGGTCGGTCCTCATGCGGCT
GCGAATCCTGCCGCGCATGTACCGCCTTTGTCTCCAATACCTGAAGAATC
ACGTGCAGATTGTACAATGAGTTCGCAGTGTGATCAAGTTGTAGTAGAAG
TTGGTTGTGGTGGTGGGAACGCCGTATATCCTTTGCTGCGTGCGAATCCG
CGATTATTTGCTTTTGCATTCGACTTTAGTGCTCTGGCCGTTGAGCTCAC
GAAGAGCAGCGTTGAGTATCGTGAAGATAGAATCATAGCCTTTCAGGCGG
ATGTCACGGTTCCTGGGAGCTACCTAGACTTGATCAGAAGCAAACACCCC
GACGGAGTTCACTTCGTGACAGCGCTCTGGACATTGTCTGCTCTAAGCCC
CTCTCAACAGAGCATCGCTGCCACCGGATTGGCAACGCTGCTCGCGGATG
GTGGCCAGCTGTTTGTTCGAGATTACGCGACTGGAGATATGAGGGAAAAG
CGGTTTGCTGAGCGTGAACAACACGTACACGACGGTTCAGGTAAACTATA
CCTACGTGGCGACGGGACATACGCCTACTTCTTCAGTCAAGAGGAGTTGA
AAGAGCTTTTTGAGGCCGTGGGGTTGACCTGTGTCTCGTGCGAATATGAA
GACCGGATTGTAAACAACCATAAGACACAGTCAAAGATGCAAAGAAGATG
GGTGCAAGCGAAGTTTAGGAAAGGATAA
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