Ggra6430.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6430.t1
Unique Name	Ggra6430.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:211008..212699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	509190.Cseg_2544
PFAMs	ABM
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.1e-06
EggNOG OGs	COG1359@1\|root,COG1359@2\|Bacteria,1N4AB@1224\|Proteobacteria,2UE2Y@28211\|Alphaproteobacteria
Description	Antibiotic biosynthesis monooxygenase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6430	Ggra6430	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 211008..212699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6430.t1.start1	Ggra6430.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 211008..211010 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6430.t1.CDS1	Ggra6430.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 211008..212699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6430.t1.exon1	Ggra6430.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 211008..212699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6430.t1.stop1	Ggra6430.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 212697..212699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6430.t1	Ggra6430.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 211008..212699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:211008..212699+
coding sequence from alignment at tig00000918_pilon:211008..212699+

mRNA sequence

>Ggra6430.t1 ID=Ggra6430.t1|Name=Ggra6430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MSSTSLPIILFALCCSFVYAQDSAEDQCKAPGSQVTGFSVFTCRPEDANA
FAQDFNSLIGNSRAEPGNLLYNMYTNPGEPGVIGFIEAYKDFQALETHLA
QEYVTSIFSHQYYNELRLKPADLYGPWVEYIPEEDRCSASDERQPIEMVF
YWVMNCTRQTVWDVITDWEDASWGMGHPETTMVPLDEDGQVMSDEEAANV
PRPLDVQEGLGPVAQRRTWAGGSYVDVRMLSKNDSNFTTVQQTLSVTSFG
GVTFDDYYVTMSLDAEGLDPDLQSRMRYHIKATVKIGTNEEARQGMKNEF
YGPRIEYYQVYFNCTKGINMKRAERTITKLYDALRAPAEERPELLDGLFA
GGFNVDGYIEDTLGKDVDPAAVADIKQPIELFATPDLRVVAVEDIVITSL
AGISVKSRIVIYSIDEWGRIFVTRIFDERCDDRKCKKLVEATEKYYKKLE
KKSLNKFERLFDDDAKVYCPVSFSPSISVEDLYNKMKEYNVEYTHLEQRS
FVNMDYKQTAQLLEATYTLADGMKKEATPVEILSFDKHEKITMFESFYEP
LNLDYAALEEEKE*

spliced messenger RNA

>Ggra6430.t1 ID=Ggra6430.t1|Name=Ggra6430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:211008..212699+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAGCACATCATTACCTATCATCCTGTTTGCCTTGTGTTGCTCATT
TGTCTACGCACAGGACTCGGCAGAAGATCAATGCAAAGCACCAGGATCGC
AAGTCACTGGGTTTTCAGTGTTCACGTGCCGTCCAGAAGATGCCAATGCC
TTTGCCCAAGACTTCAACTCTCTCATTGGAAACTCCCGTGCCGAACCTGG
AAACCTTCTTTACAACATGTACACAAATCCGGGTGAACCTGGCGTTATTG
GTTTCATTGAGGCGTACAAAGACTTTCAAGCCCTTGAAACGCATCTTGCC
CAGGAATACGTAACCAGCATATTTTCTCATCAATACTATAATGAACTCAG
ACTGAAGCCGGCAGATTTGTACGGGCCTTGGGTTGAATACATTCCGGAAG
AAGATCGCTGCTCTGCAAGCGATGAAAGGCAACCCATTGAAATGGTTTTC
TACTGGGTTATGAATTGTACTAGACAGACAGTATGGGATGTGATCACTGA
TTGGGAAGATGCGTCGTGGGGAATGGGACATCCGGAGACGACTATGGTTC
CGCTTGATGAGGATGGGCAGGTTATGTCTGACGAAGAAGCCGCAAATGTA
CCGAGACCCTTGGATGTTCAAGAAGGACTGGGACCCGTTGCCCAGCGTCG
TACCTGGGCAGGTGGGAGCTACGTTGACGTACGGATGCTTTCGAAGAACG
ATTCTAACTTCACTACCGTCCAACAAACTCTTTCCGTCACTTCGTTTGGG
GGGGTTACGTTCGATGACTACTATGTGACAATGAGTCTGGATGCTGAGGG
ACTGGACCCTGACTTACAATCACGCATGCGCTATCACATTAAGGCTACGG
TAAAGATCGGTACTAATGAGGAGGCTAGACAAGGTATGAAAAACGAATTT
TATGGACCTCGGATTGAATACTACCAGGTATACTTCAATTGCACCAAGGG
GATTAACATGAAGCGGGCTGAAAGAACGATTACAAAGCTTTATGATGCTC
TTCGAGCCCCAGCAGAAGAAAGACCTGAACTGTTGGATGGTCTGTTTGCG
GGCGGGTTCAACGTGGATGGCTATATCGAAGATACTCTTGGAAAGGATGT
TGATCCAGCAGCAGTTGCAGACATCAAACAACCCATTGAACTGTTCGCAA
CACCGGATCTTCGAGTCGTTGCTGTGGAGGATATCGTGATTACATCGCTG
GCGGGAATCAGTGTGAAGAGTCGTATTGTGATCTATTCCATCGACGAGTG
GGGTCGCATTTTCGTGACGAGAATCTTCGATGAGCGTTGTGACGACAGAA
AATGCAAAAAGTTGGTTGAAGCCACCGAAAAGTACTACAAAAAGTTGGAG
AAGAAGAGCTTGAACAAATTCGAGCGGCTGTTCGACGACGATGCAAAAGT
GTATTGTCCTGTATCATTCTCTCCTTCCATCTCTGTTGAAGATCTATACA
ACAAAATGAAGGAGTACAACGTCGAGTACACGCATCTTGAGCAAAGAAGT
TTTGTGAATATGGATTACAAGCAGACTGCACAACTGCTGGAGGCCACGTA
TACGCTGGCGGACGGCATGAAGAAAGAAGCGACTCCCGTTGAGATACTTT
CGTTCGACAAGCATGAGAAAATAACCATGTTTGAGTCGTTTTATGAGCCG
TTGAACTTGGACTACGCGGCACTGGAGGAGGAGAAGGAATAG

protein sequence of Ggra6430.t1

>Ggra6430.t1 ID=Ggra6430.t1|Name=Ggra6430.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MSSTSLPIILFALCCSFVYAQDSAEDQCKAPGSQVTGFSVFTCRPEDANA
FAQDFNSLIGNSRAEPGNLLYNMYTNPGEPGVIGFIEAYKDFQALETHLA
QEYVTSIFSHQYYNELRLKPADLYGPWVEYIPEEDRCSASDERQPIEMVF
YWVMNCTRQTVWDVITDWEDASWGMGHPETTMVPLDEDGQVMSDEEAANV
PRPLDVQEGLGPVAQRRTWAGGSYVDVRMLSKNDSNFTTVQQTLSVTSFG
GVTFDDYYVTMSLDAEGLDPDLQSRMRYHIKATVKIGTNEEARQGMKNEF
YGPRIEYYQVYFNCTKGINMKRAERTITKLYDALRAPAEERPELLDGLFA
GGFNVDGYIEDTLGKDVDPAAVADIKQPIELFATPDLRVVAVEDIVITSL
AGISVKSRIVIYSIDEWGRIFVTRIFDERCDDRKCKKLVEATEKYYKKLE
KKSLNKFERLFDDDAKVYCPVSFSPSISVEDLYNKMKEYNVEYTHLEQRS
FVNMDYKQTAQLLEATYTLADGMKKEATPVEILSFDKHEKITMFESFYEP
LNLDYAALEEEKE*

mRNA from alignment at tig00000918_pilon:211008..212699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6430.t1 ID=Ggra6430.t1|Name=Ggra6430.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:211008..212699+ (Gracilaria gracilis GNS1m male)
ATGAGTAGCACATCATTACCTATCATCCTGTTTGCCTTGTGTTGCTCATT
TGTCTACGCACAGGACTCGGCAGAAGATCAATGCAAAGCACCAGGATCGC
AAGTCACTGGGTTTTCAGTGTTCACGTGCCGTCCAGAAGATGCCAATGCC
TTTGCCCAAGACTTCAACTCTCTCATTGGAAACTCCCGTGCCGAACCTGG
AAACCTTCTTTACAACATGTACACAAATCCGGGTGAACCTGGCGTTATTG
GTTTCATTGAGGCGTACAAAGACTTTCAAGCCCTTGAAACGCATCTTGCC
CAGGAATACGTAACCAGCATATTTTCTCATCAATACTATAATGAACTCAG
ACTGAAGCCGGCAGATTTGTACGGGCCTTGGGTTGAATACATTCCGGAAG
AAGATCGCTGCTCTGCAAGCGATGAAAGGCAACCCATTGAAATGGTTTTC
TACTGGGTTATGAATTGTACTAGACAGACAGTATGGGATGTGATCACTGA
TTGGGAAGATGCGTCGTGGGGAATGGGACATCCGGAGACGACTATGGTTC
CGCTTGATGAGGATGGGCAGGTTATGTCTGACGAAGAAGCCGCAAATGTA
CCGAGACCCTTGGATGTTCAAGAAGGACTGGGACCCGTTGCCCAGCGTCG
TACCTGGGCAGGTGGGAGCTACGTTGACGTACGGATGCTTTCGAAGAACG
ATTCTAACTTCACTACCGTCCAACAAACTCTTTCCGTCACTTCGTTTGGG
GGGGTTACGTTCGATGACTACTATGTGACAATGAGTCTGGATGCTGAGGG
ACTGGACCCTGACTTACAATCACGCATGCGCTATCACATTAAGGCTACGG
TAAAGATCGGTACTAATGAGGAGGCTAGACAAGGTATGAAAAACGAATTT
TATGGACCTCGGATTGAATACTACCAGGTATACTTCAATTGCACCAAGGG
GATTAACATGAAGCGGGCTGAAAGAACGATTACAAAGCTTTATGATGCTC
TTCGAGCCCCAGCAGAAGAAAGACCTGAACTGTTGGATGGTCTGTTTGCG
GGCGGGTTCAACGTGGATGGCTATATCGAAGATACTCTTGGAAAGGATGT
TGATCCAGCAGCAGTTGCAGACATCAAACAACCCATTGAACTGTTCGCAA
CACCGGATCTTCGAGTCGTTGCTGTGGAGGATATCGTGATTACATCGCTG
GCGGGAATCAGTGTGAAGAGTCGTATTGTGATCTATTCCATCGACGAGTG
GGGTCGCATTTTCGTGACGAGAATCTTCGATGAGCGTTGTGACGACAGAA
AATGCAAAAAGTTGGTTGAAGCCACCGAAAAGTACTACAAAAAGTTGGAG
AAGAAGAGCTTGAACAAATTCGAGCGGCTGTTCGACGACGATGCAAAAGT
GTATTGTCCTGTATCATTCTCTCCTTCCATCTCTGTTGAAGATCTATACA
ACAAAATGAAGGAGTACAACGTCGAGTACACGCATCTTGAGCAAAGAAGT
TTTGTGAATATGGATTACAAGCAGACTGCACAACTGCTGGAGGCCACGTA
TACGCTGGCGGACGGCATGAAGAAAGAAGCGACTCCCGTTGAGATACTTT
CGTTCGACAAGCATGAGAAAATAACCATGTTTGAGTCGTTTTATGAGCCG
TTGAACTTGGACTACGCGGCACTGGAGGAGGAGAAGGAATAG

Coding sequence (CDS) from alignment at tig00000918_pilon:211008..212699+

>Ggra6430.t1 ID=Ggra6430.t1|Name=Ggra6430.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000918_pilon:211008..212699+ (Gracilaria gracilis GNS1m male)
ATGAGTAGCACATCATTACCTATCATCCTGTTTGCCTTGTGTTGCTCATT
TGTCTACGCACAGGACTCGGCAGAAGATCAATGCAAAGCACCAGGATCGC
AAGTCACTGGGTTTTCAGTGTTCACGTGCCGTCCAGAAGATGCCAATGCC
TTTGCCCAAGACTTCAACTCTCTCATTGGAAACTCCCGTGCCGAACCTGG
AAACCTTCTTTACAACATGTACACAAATCCGGGTGAACCTGGCGTTATTG
GTTTCATTGAGGCGTACAAAGACTTTCAAGCCCTTGAAACGCATCTTGCC
CAGGAATACGTAACCAGCATATTTTCTCATCAATACTATAATGAACTCAG
ACTGAAGCCGGCAGATTTGTACGGGCCTTGGGTTGAATACATTCCGGAAG
AAGATCGCTGCTCTGCAAGCGATGAAAGGCAACCCATTGAAATGGTTTTC
TACTGGGTTATGAATTGTACTAGACAGACAGTATGGGATGTGATCACTGA
TTGGGAAGATGCGTCGTGGGGAATGGGACATCCGGAGACGACTATGGTTC
CGCTTGATGAGGATGGGCAGGTTATGTCTGACGAAGAAGCCGCAAATGTA
CCGAGACCCTTGGATGTTCAAGAAGGACTGGGACCCGTTGCCCAGCGTCG
TACCTGGGCAGGTGGGAGCTACGTTGACGTACGGATGCTTTCGAAGAACG
ATTCTAACTTCACTACCGTCCAACAAACTCTTTCCGTCACTTCGTTTGGG
GGGGTTACGTTCGATGACTACTATGTGACAATGAGTCTGGATGCTGAGGG
ACTGGACCCTGACTTACAATCACGCATGCGCTATCACATTAAGGCTACGG
TAAAGATCGGTACTAATGAGGAGGCTAGACAAGGTATGAAAAACGAATTT
TATGGACCTCGGATTGAATACTACCAGGTATACTTCAATTGCACCAAGGG
GATTAACATGAAGCGGGCTGAAAGAACGATTACAAAGCTTTATGATGCTC
TTCGAGCCCCAGCAGAAGAAAGACCTGAACTGTTGGATGGTCTGTTTGCG
GGCGGGTTCAACGTGGATGGCTATATCGAAGATACTCTTGGAAAGGATGT
TGATCCAGCAGCAGTTGCAGACATCAAACAACCCATTGAACTGTTCGCAA
CACCGGATCTTCGAGTCGTTGCTGTGGAGGATATCGTGATTACATCGCTG
GCGGGAATCAGTGTGAAGAGTCGTATTGTGATCTATTCCATCGACGAGTG
GGGTCGCATTTTCGTGACGAGAATCTTCGATGAGCGTTGTGACGACAGAA
AATGCAAAAAGTTGGTTGAAGCCACCGAAAAGTACTACAAAAAGTTGGAG
AAGAAGAGCTTGAACAAATTCGAGCGGCTGTTCGACGACGATGCAAAAGT
GTATTGTCCTGTATCATTCTCTCCTTCCATCTCTGTTGAAGATCTATACA
ACAAAATGAAGGAGTACAACGTCGAGTACACGCATCTTGAGCAAAGAAGT
TTTGTGAATATGGATTACAAGCAGACTGCACAACTGCTGGAGGCCACGTA
TACGCTGGCGGACGGCATGAAGAAAGAAGCGACTCCCGTTGAGATACTTT
CGTTCGACAAGCATGAGAAAATAACCATGTTTGAGTCGTTTTATGAGCCG
TTGAACTTGGACTACGCGGCACTGGAGGAGGAGAAGGAATAG