Ggra6416.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6416.t1
Unique NameGgra6416.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:117892..118575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6416Ggra6416Gracilaria gracilis GNS1m malegenetig00000918_pilon 117892..118575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6416.t1.start1Ggra6416.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 117892..117894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6416.t1.CDS1Ggra6416.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 117892..118575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6416.t1.exon1Ggra6416.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 117892..118575 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6416.t1.stop1Ggra6416.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 118573..118575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6416.t1Ggra6416.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 117892..118575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6416.t1 ID=Ggra6416.t1|Name=Ggra6416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MLARSVLLLCLAASLCARAALGARSPPPPPDGVQRLGYEMGYENAESFEP
ALPPGHEPEMGWNAPSSEPSFGAPAAAAPTPAAAAAPTPMAAAAPTPMAA
AAPTPMAAAAPTPVAAAPTPAAAPTPLAAAPTPLAAAPTPVAPFSLLGAG
TSVVLSDGTAVSSAGDNTVSSAASADEGVGAANAADGGSALAVGGPGLSA
GLAGVLPPSFGAFGGFGALAPAASPDV*
back to top

spliced messenger RNA

>Ggra6416.t1 ID=Ggra6416.t1|Name=Ggra6416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000918_pilon:117892..118575+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTCGCTCTGTGCTGCTGCTGTGTCTGGCTGCCAGCCTGTGCGc
gcgcgccgcgctgggcgcgcgctcgccgccgccgccgccTGATGGCGTGC
AGCGGCTGGGCTACGAGATGGGCTACGAGAACGCCGAGTCGTTCGAGCCC
GCCCTTCCGCCCGGCCACGAGCCCGAGATGGGCTGGAATGCCCCGTCGTC
CGAGCCGTCGTTCGGCGCGCCGGCGGCCGCAGCGCCCACGCCAGCGGCAG
CAGCAGCGCCCACGCCGATGgcagcagcagcacccacaccgatggcagca
gcagcacccacgccgatggcagcagcagcaCCCACGCCCGTGGCAGCAGC
GCCCACGCCGGCGGCAGCTCCCACGCCCTTGGCGGCAGCTCCCACGCCCT
TGGCGGCAGCGCCCACGCCCGTGGCACCGTTCTCGCTGCTAGGCGCCGGC
ACGTCGGTGGTGCTGAGCGACGGCACGGCGGTGTCGTCGGCGGGCGACAA
CACGGTGTCGTCGGCCGCCAGCGCGGACGAGGGCGTGGGAGCGGCCAACG
CCGCGGACGGCGGCAGCGCGCTGGCCGTGGGCGGGCCGGGGCTGAGCGCG
GGGCTGGCCGGCGTGCTGCCGCCGTCGTTCGGCGCCTTTGGCGGCTTTGG
CGCGCTGGCGCCCGCGGCGTCGCCCGACGTGTAG
back to top

protein sequence of Ggra6416.t1

>Ggra6416.t1 ID=Ggra6416.t1|Name=Ggra6416.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MLARSVLLLCLAASLCARAALGARSPPPPPDGVQRLGYEMGYENAESFEP
ALPPGHEPEMGWNAPSSEPSFGAPAAAAPTPAAAAAPTPMAAAAPTPMAA
AAPTPMAAAAPTPVAAAPTPAAAPTPLAAAPTPLAAAPTPVAPFSLLGAG
TSVVLSDGTAVSSAGDNTVSSAASADEGVGAANAADGGSALAVGGPGLSA
GLAGVLPPSFGAFGGFGALAPAASPDV*
back to top

mRNA from alignment at tig00000918_pilon:117892..118575+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6416.t1 ID=Ggra6416.t1|Name=Ggra6416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000918_pilon:117892..118575+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTCGCTCTGTGCTGCTGCTGTGTCTGGCTGCCAGCCTGTGCGc
gcgcgccgcgctgggcgcgcgctcgccgccgccgccgccTGATGGCGTGC
AGCGGCTGGGCTACGAGATGGGCTACGAGAACGCCGAGTCGTTCGAGCCC
GCCCTTCCGCCCGGCCACGAGCCCGAGATGGGCTGGAATGCCCCGTCGTC
CGAGCCGTCGTTCGGCGCGCCGGCGGCCGCAGCGCCCACGCCAGCGGCAG
CAGCAGCGCCCACGCCGATGgcagcagcagcacccacaccgatggcagca
gcagcacccacgccgatggcagcagcagcaCCCACGCCCGTGGCAGCAGC
GCCCACGCCGGCGGCAGCTCCCACGCCCTTGGCGGCAGCTCCCACGCCCT
TGGCGGCAGCGCCCACGCCCGTGGCACCGTTCTCGCTGCTAGGCGCCGGC
ACGTCGGTGGTGCTGAGCGACGGCACGGCGGTGTCGTCGGCGGGCGACAA
CACGGTGTCGTCGGCCGCCAGCGCGGACGAGGGCGTGGGAGCGGCCAACG
CCGCGGACGGCGGCAGCGCGCTGGCCGTGGGCGGGCCGGGGCTGAGCGCG
GGGCTGGCCGGCGTGCTGCCGCCGTCGTTCGGCGCCTTTGGCGGCTTTGG
CGCGCTGGCGCCCGCGGCGTCGCCCGACGTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000918_pilon:117892..118575+

>Ggra6416.t1 ID=Ggra6416.t1|Name=Ggra6416.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000918_pilon:117892..118575+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTCGCTCTGTGCTGCTGCTGTGTCTGGCTGCCAGCCTGTGCGc
gcgcgccgcgctgggcgcgcgctcgccgccgccgccgccTGATGGCGTGC
AGCGGCTGGGCTACGAGATGGGCTACGAGAACGCCGAGTCGTTCGAGCCC
GCCCTTCCGCCCGGCCACGAGCCCGAGATGGGCTGGAATGCCCCGTCGTC
CGAGCCGTCGTTCGGCGCGCCGGCGGCCGCAGCGCCCACGCCAGCGGCAG
CAGCAGCGCCCACGCCGATGgcagcagcagcacccacaccgatggcagca
gcagcacccacgccgatggcagcagcagcaCCCACGCCCGTGGCAGCAGC
GCCCACGCCGGCGGCAGCTCCCACGCCCTTGGCGGCAGCTCCCACGCCCT
TGGCGGCAGCGCCCACGCCCGTGGCACCGTTCTCGCTGCTAGGCGCCGGC
ACGTCGGTGGTGCTGAGCGACGGCACGGCGGTGTCGTCGGCGGGCGACAA
CACGGTGTCGTCGGCCGCCAGCGCGGACGAGGGCGTGGGAGCGGCCAACG
CCGCGGACGGCGGCAGCGCGCTGGCCGTGGGCGGGCCGGGGCTGAGCGCG
GGGCTGGCCGGCGTGCTGCCGCCGTCGTTCGGCGCCTTTGGCGGCTTTGG
CGCGCTGGCGCCCGCGGCGTCGCCCGACGTGTAG
back to top