Ggra6433.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6433.t1
Unique Name	Ggra6433.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000918_pilon	contig	tig00000918_pilon:218241..219350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1218075.BAYA01000006_gene2253
PFAMs	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
Max annot lvl	1224\|Proteobacteria
KEGG ko	ko:K07011
Evalue	6.24e-14
EggNOG OGs	COG0438@1\|root,COG1216@1\|root,COG4372@1\|root,COG0438@2\|Bacteria,COG1216@2\|Bacteria,COG4372@2\|Bacteria,1MX5Z@1224\|Proteobacteria
Description	Glycosyl transferase, family 2
COG category	J
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6433	Ggra6433	Gracilaria gracilis GNS1m male	gene	tig00000918_pilon 218241..219350 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6433.t1.start1	Ggra6433.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000918_pilon 218241..218243 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6433.t1.CDS1	Ggra6433.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000918_pilon 218241..219350 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6433.t1.exon1	Ggra6433.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000918_pilon 218241..219350 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6433.t1.stop1	Ggra6433.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000918_pilon 219348..219350 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6433.t1	Ggra6433.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000918_pilon 218241..219350 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000918_pilon:218241..219350+
coding sequence from alignment at tig00000918_pilon:218241..219350+

mRNA sequence

>Ggra6433.t1 ID=Ggra6433.t1|Name=Ggra6433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MAPRRPLPPALRALLLLLPPALLCYVLLPLSLPLSLSLPLSLSLSRARLP
ELAVVDAAPPPLPPPPPPPPPPPPPRLLASIRRACRLCSVAPRAQQPDVR
RLRSFGPAYSSIVVSHALRVVYVPVFKAASTATMWTIAYLERNAHVLNAS
RHALDVALHDMAHPAWRRHALLRWSDRRIHNVLSSDAYLKFGFVRNPFHR
LVSAYVDKVLRPSVASHEYQAQMYSLFGDDRSLRAAANRTKPSFERFVTT
VAAVLAQPPSPAFEDNHSRRDLHWRPQIELLHPDIIPFDFIGSFDNLQQD
TQHLLNWMYQHTHRRVPQHMLHKRHATDPAQKASLYHIIRHNLQLCQLIV
RTYKQDFEAFNFSTHPPSL*

spliced messenger RNA

>Ggra6433.t1 ID=Ggra6433.t1|Name=Ggra6433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000918_pilon:218241..219350+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgccgcgccgcccgctgccgcccgcgctgcgcgcgttgctgctgct
gctgccgcccgcgctgctgtgctacgtgctactgccgctgtcgctgccgc
tgtcgctgtcgctgccgctgtcgctgtcgctgtcgcGCGCGCGTCTGCCC
GAGCTGGCCGTCGTCGAcgccgcgccgcccccgctgccgccgccgccgcc
gccgccgccgccgccgccgccgccgcGGCTGCTGGCGTCCATCCGGCGCG
CGTGTCGGCTGTGCTCCGTGGCGCCGCGCGCGCAGCAGCCGGACGTGCGA
CGGCTGCGCTCGTTCGGGCCGGCGTACTCGTCCATCGTGGTGTCGCACGC
GCTGCGCGTCGTGTACGTGCCGGTGTTCAAGGCGGCGTCCACGGCCACCA
TGTGGACCATTGCGTATCTGGAGCGCAACGCGCACGTGCTCAACGCGTCG
CGCCACGCGCTCGACGTCGCGCTGCACGATATGGCGCACCCGGCGTGGAG
GCGCCACGCGCTGCTGCGTTGGTCCGACCGTCGTATCCACAACGTGCTCT
CTAGCGACGCTTACCTCAAGTTCGGCTTTGTGAGAAACCCCTTCCATCGC
CTCGTCTCCGCGTACGTCGATAAGGTGCTGCGCCCGTCTGTCGCTTCGCA
CGAGTATCAGGCGCAGATGTATAGCCTGTTTGGCGATGACCGCTCGTTGC
GTGCGGCTGCCAACCGTACAAAGCCTTCGTTTGAGCGCTTTGTCACTACT
GTCGCCGCCGTGCTCGCGCAGCCGCCGTCGCCAGCGTTTGAAGATAATCA
CAGTCGCAGAGACCTGCACTGGCGCCCGCAGATCGAATTGTTGCACCCGG
ATATCATCCCGTTCGACTTTATTGGCAGCTTTGACAACCTGCAGCAAGAC
ACGCAGCACCTTCTCAACTGGATGTATCAACATACCCATCGCCGCGTCCC
GCAACACATGCTGCACAAACGTCATGCTACCGACCCTGCGCAAAAGGCGA
GCCTGTATCATATCATTCGCCACAATCTTCAACTCTGTCAACTCATTGTT
CGCACCTATAAACAGGACTTTGAAGCCTTCAACTTCTCTACGCACCCGCC
GTCTTTGTAA

protein sequence of Ggra6433.t1

>Ggra6433.t1 ID=Ggra6433.t1|Name=Ggra6433.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MAPRRPLPPALRALLLLLPPALLCYVLLPLSLPLSLSLPLSLSLSRARLP
ELAVVDAAPPPLPPPPPPPPPPPPPRLLASIRRACRLCSVAPRAQQPDVR
RLRSFGPAYSSIVVSHALRVVYVPVFKAASTATMWTIAYLERNAHVLNAS
RHALDVALHDMAHPAWRRHALLRWSDRRIHNVLSSDAYLKFGFVRNPFHR
LVSAYVDKVLRPSVASHEYQAQMYSLFGDDRSLRAAANRTKPSFERFVTT
VAAVLAQPPSPAFEDNHSRRDLHWRPQIELLHPDIIPFDFIGSFDNLQQD
TQHLLNWMYQHTHRRVPQHMLHKRHATDPAQKASLYHIIRHNLQLCQLIV
RTYKQDFEAFNFSTHPPSL*

mRNA from alignment at tig00000918_pilon:218241..219350+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6433.t1 ID=Ggra6433.t1|Name=Ggra6433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000918_pilon:218241..219350+ (Gracilaria gracilis GNS1m male)
atggcgccgcgccgcccgctgccgcccgcgctgcgcgcgttgctgctgct
gctgccgcccgcgctgctgtgctacgtgctactgccgctgtcgctgccgc
tgtcgctgtcgctgccgctgtcgctgtcgctgtcgcGCGCGCGTCTGCCC
GAGCTGGCCGTCGTCGAcgccgcgccgcccccgctgccgccgccgccgcc
gccgccgccgccgccgccgccgccgcGGCTGCTGGCGTCCATCCGGCGCG
CGTGTCGGCTGTGCTCCGTGGCGCCGCGCGCGCAGCAGCCGGACGTGCGA
CGGCTGCGCTCGTTCGGGCCGGCGTACTCGTCCATCGTGGTGTCGCACGC
GCTGCGCGTCGTGTACGTGCCGGTGTTCAAGGCGGCGTCCACGGCCACCA
TGTGGACCATTGCGTATCTGGAGCGCAACGCGCACGTGCTCAACGCGTCG
CGCCACGCGCTCGACGTCGCGCTGCACGATATGGCGCACCCGGCGTGGAG
GCGCCACGCGCTGCTGCGTTGGTCCGACCGTCGTATCCACAACGTGCTCT
CTAGCGACGCTTACCTCAAGTTCGGCTTTGTGAGAAACCCCTTCCATCGC
CTCGTCTCCGCGTACGTCGATAAGGTGCTGCGCCCGTCTGTCGCTTCGCA
CGAGTATCAGGCGCAGATGTATAGCCTGTTTGGCGATGACCGCTCGTTGC
GTGCGGCTGCCAACCGTACAAAGCCTTCGTTTGAGCGCTTTGTCACTACT
GTCGCCGCCGTGCTCGCGCAGCCGCCGTCGCCAGCGTTTGAAGATAATCA
CAGTCGCAGAGACCTGCACTGGCGCCCGCAGATCGAATTGTTGCACCCGG
ATATCATCCCGTTCGACTTTATTGGCAGCTTTGACAACCTGCAGCAAGAC
ACGCAGCACCTTCTCAACTGGATGTATCAACATACCCATCGCCGCGTCCC
GCAACACATGCTGCACAAACGTCATGCTACCGACCCTGCGCAAAAGGCGA
GCCTGTATCATATCATTCGCCACAATCTTCAACTCTGTCAACTCATTGTT
CGCACCTATAAACAGGACTTTGAAGCCTTCAACTTCTCTACGCACCCGCC
GTCTTTGTAA

Coding sequence (CDS) from alignment at tig00000918_pilon:218241..219350+

>Ggra6433.t1 ID=Ggra6433.t1|Name=Ggra6433.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000918_pilon:218241..219350+ (Gracilaria gracilis GNS1m male)
atggcgccgcgccgcccgctgccgcccgcgctgcgcgcgttgctgctgct
gctgccgcccgcgctgctgtgctacgtgctactgccgctgtcgctgccgc
tgtcgctgtcgctgccgctgtcgctgtcgctgtcgcGCGCGCGTCTGCCC
GAGCTGGCCGTCGTCGAcgccgcgccgcccccgctgccgccgccgccgcc
gccgccgccgccgccgccgccgccgcGGCTGCTGGCGTCCATCCGGCGCG
CGTGTCGGCTGTGCTCCGTGGCGCCGCGCGCGCAGCAGCCGGACGTGCGA
CGGCTGCGCTCGTTCGGGCCGGCGTACTCGTCCATCGTGGTGTCGCACGC
GCTGCGCGTCGTGTACGTGCCGGTGTTCAAGGCGGCGTCCACGGCCACCA
TGTGGACCATTGCGTATCTGGAGCGCAACGCGCACGTGCTCAACGCGTCG
CGCCACGCGCTCGACGTCGCGCTGCACGATATGGCGCACCCGGCGTGGAG
GCGCCACGCGCTGCTGCGTTGGTCCGACCGTCGTATCCACAACGTGCTCT
CTAGCGACGCTTACCTCAAGTTCGGCTTTGTGAGAAACCCCTTCCATCGC
CTCGTCTCCGCGTACGTCGATAAGGTGCTGCGCCCGTCTGTCGCTTCGCA
CGAGTATCAGGCGCAGATGTATAGCCTGTTTGGCGATGACCGCTCGTTGC
GTGCGGCTGCCAACCGTACAAAGCCTTCGTTTGAGCGCTTTGTCACTACT
GTCGCCGCCGTGCTCGCGCAGCCGCCGTCGCCAGCGTTTGAAGATAATCA
CAGTCGCAGAGACCTGCACTGGCGCCCGCAGATCGAATTGTTGCACCCGG
ATATCATCCCGTTCGACTTTATTGGCAGCTTTGACAACCTGCAGCAAGAC
ACGCAGCACCTTCTCAACTGGATGTATCAACATACCCATCGCCGCGTCCC
GCAACACATGCTGCACAAACGTCATGCTACCGACCCTGCGCAAAAGGCGA
GCCTGTATCATATCATTCGCCACAATCTTCAACTCTGTCAACTCATTGTT
CGCACCTATAAACAGGACTTTGAAGCCTTCAACTTCTCTACGCACCCGCC
GTCTTTGTAA