Ggra8482.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8482.t1
Unique NameGgra8482.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:843750..844670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008613707.1
Preferred namePPP4C
PFAMsMetallophos
Max annot lvl2759|Eukaryota
KEGG koko:K15423
KEGG Pathwayko04922,map04922
GOsGO:0000003,GO:0000018,GO:0000278,GO:0000775,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001944,GO:0003002,GO:0003674,GO:0003824,GO:0004704,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005521,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006282,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007409,GO:0007417,GO:0007420,GO:0007623,GO:0008150,GO:0008152,GO:0008287,GO:0008589,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009648,GO:0009649,GO:0009653,GO:0009799,GO:0009855,GO:0009889,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010569,GO:0010646,GO:0010647,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0016310,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021952,GO:0021953,GO:0021954,GO:0021955,GO:0022008,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030289,GO:0030510,GO:0030513,GO:0031175,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032922,GO:0032989,GO:0032990,GO:0032991,GO:0034097,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042221,GO:0042578,GO:0042752,GO:0043153,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045879,GO:0047485,GO:0048262,GO:0048264,GO:0048468,GO:0048511,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0070555,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071944,GO:0072357,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090100,GO:0090287,GO:0098687,GO:0098772,GO:0120036,GO:0120039,GO:0140096,GO:1901564,GO:1902494,GO:1903293,GO:1903506,GO:2000112,GO:2000779,GO:2001020,GO:2001141
Evalue3.6e-183
EggNOG OGsCOG0639@1|root,KOG0372@2759|Eukaryota
EC3.1.3.16
DescriptionSerine threonine-protein phosphatase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8482Ggra8482Gracilaria gracilis GNS1m malegenetig00000041_pilon 843750..844670 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8482.t1.start1Ggra8482.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 843750..843752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8482.t1.CDS1Ggra8482.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 843750..844670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8482.t1.exon1Ggra8482.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 843750..844670 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8482.t1.stop1Ggra8482.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 844668..844670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8482.t1Ggra8482.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 843750..844670 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8482.t1 ID=Ggra8482.t1|Name=Ggra8482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MTLADLDAWIEQLKRCEYLNEIEVKSLCEQARELLVEESNIQTVSAPVTI
AGDIHGQFYDLLELLNNGGPLPDVQYLFMGDFVDRGFNSVETFLLLLTLK
VRYPDRVTLIRGNHESRQITQVYGFYDECMRKYGNANVWRYCTEVFDYLA
LGALINGSAFCVHGGLSPSINALDQIRAIDRKQEVPHDGAMCDLLWSDPD
DIKGWAVSPRGAGYLFGGDIVDKFNHFNDLQLIARAHQLVMEGYKSMFND
TLVTVWSAPNYCYRCGNVAAILTLDDKLQRQFNVFNAASQEVRGTTSKRP
APEYFL*
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spliced messenger RNA

>Ggra8482.t1 ID=Ggra8482.t1|Name=Ggra8482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000041_pilon:843750..844670+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTTGCAGACCTGGACGCGTGGATCGAGCAGCTCAAGCGCTGCGA
GTATCTCAACGAGATCGAGGTCAAGTCGCTGTGCGAGCAGGCGCGCGAGC
TCCTCGTGGAGGAGAGTAACATTCAGACCGTTTCGGCACCCGTCACCATA
GCTGGCGATATTCACGGCCAGTTCTACGACTTGCTGGAACTGCTCAATAA
TGGCGGCCCGCTGCCCGACGTGCAGTACCTCTTCATGGGCGACTTTGTCG
ATCGCGGCTTTAATTCTGTTGAGACCTTTTTGCTGTTGCTAACGCTCAAG
GTTAGATATCCCGACCGCGTCACGCTAATCCGTGGCAACCACGAGAGTCG
CCAGATCACGCAGGTATACGGCTTCTACGATGAGTGCATGAGAAAGTACG
GAAACGCCAACGTGTGGCGCTACTGTACCGAAGTCTTCGACTACCTTGCA
CTGGGTGCCCTCATTAATGGCAGTGCCTTCTGCGTGCACGGTGGCCTGTC
GCCTAGTATCAACGCCCTCGACCAGATTCGAGCCATCGATCGAAAGCAAG
AGGTGCCTCACGACGGTGCCATGTGCGATTTGTTATGGAGCGATCCGGAC
GACATTAAGGGCTGGGCTGTGTCCCCGCGCGGCGCAGGCTATCTTTTTGG
AGGCGACATTGTTGACAAGTTCAACCATTTTAATGACTTGCAACTCATCG
CCCGAGCGCATCAGCTTGTCATGGAAGGCTACAAGAGCATGTTTAACGAC
ACTCTCGTCACAGTGTGGTCTGCTCCAAACTATTGCTATCGCTGCGGCAA
TGTGGCCGCCATTCTAACTCTGGATGACAAACTTCAGCGACAGTTTAACG
TCTTCAATGCTGCTTCTCAAGAAGTTCGTGGAACTACATCCAAGCGCCCC
GCTCCGGAATATTTCTTGTAA
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protein sequence of Ggra8482.t1

>Ggra8482.t1 ID=Ggra8482.t1|Name=Ggra8482.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MTLADLDAWIEQLKRCEYLNEIEVKSLCEQARELLVEESNIQTVSAPVTI
AGDIHGQFYDLLELLNNGGPLPDVQYLFMGDFVDRGFNSVETFLLLLTLK
VRYPDRVTLIRGNHESRQITQVYGFYDECMRKYGNANVWRYCTEVFDYLA
LGALINGSAFCVHGGLSPSINALDQIRAIDRKQEVPHDGAMCDLLWSDPD
DIKGWAVSPRGAGYLFGGDIVDKFNHFNDLQLIARAHQLVMEGYKSMFND
TLVTVWSAPNYCYRCGNVAAILTLDDKLQRQFNVFNAASQEVRGTTSKRP
APEYFL*
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mRNA from alignment at tig00000041_pilon:843750..844670+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8482.t1 ID=Ggra8482.t1|Name=Ggra8482.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000041_pilon:843750..844670+ (Gracilaria gracilis GNS1m male)
ATGACGCTTGCAGACCTGGACGCGTGGATCGAGCAGCTCAAGCGCTGCGA
GTATCTCAACGAGATCGAGGTCAAGTCGCTGTGCGAGCAGGCGCGCGAGC
TCCTCGTGGAGGAGAGTAACATTCAGACCGTTTCGGCACCCGTCACCATA
GCTGGCGATATTCACGGCCAGTTCTACGACTTGCTGGAACTGCTCAATAA
TGGCGGCCCGCTGCCCGACGTGCAGTACCTCTTCATGGGCGACTTTGTCG
ATCGCGGCTTTAATTCTGTTGAGACCTTTTTGCTGTTGCTAACGCTCAAG
GTTAGATATCCCGACCGCGTCACGCTAATCCGTGGCAACCACGAGAGTCG
CCAGATCACGCAGGTATACGGCTTCTACGATGAGTGCATGAGAAAGTACG
GAAACGCCAACGTGTGGCGCTACTGTACCGAAGTCTTCGACTACCTTGCA
CTGGGTGCCCTCATTAATGGCAGTGCCTTCTGCGTGCACGGTGGCCTGTC
GCCTAGTATCAACGCCCTCGACCAGATTCGAGCCATCGATCGAAAGCAAG
AGGTGCCTCACGACGGTGCCATGTGCGATTTGTTATGGAGCGATCCGGAC
GACATTAAGGGCTGGGCTGTGTCCCCGCGCGGCGCAGGCTATCTTTTTGG
AGGCGACATTGTTGACAAGTTCAACCATTTTAATGACTTGCAACTCATCG
CCCGAGCGCATCAGCTTGTCATGGAAGGCTACAAGAGCATGTTTAACGAC
ACTCTCGTCACAGTGTGGTCTGCTCCAAACTATTGCTATCGCTGCGGCAA
TGTGGCCGCCATTCTAACTCTGGATGACAAACTTCAGCGACAGTTTAACG
TCTTCAATGCTGCTTCTCAAGAAGTTCGTGGAACTACATCCAAGCGCCCC
GCTCCGGAATATTTCTTGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:843750..844670+

>Ggra8482.t1 ID=Ggra8482.t1|Name=Ggra8482.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000041_pilon:843750..844670+ (Gracilaria gracilis GNS1m male)
ATGACGCTTGCAGACCTGGACGCGTGGATCGAGCAGCTCAAGCGCTGCGA
GTATCTCAACGAGATCGAGGTCAAGTCGCTGTGCGAGCAGGCGCGCGAGC
TCCTCGTGGAGGAGAGTAACATTCAGACCGTTTCGGCACCCGTCACCATA
GCTGGCGATATTCACGGCCAGTTCTACGACTTGCTGGAACTGCTCAATAA
TGGCGGCCCGCTGCCCGACGTGCAGTACCTCTTCATGGGCGACTTTGTCG
ATCGCGGCTTTAATTCTGTTGAGACCTTTTTGCTGTTGCTAACGCTCAAG
GTTAGATATCCCGACCGCGTCACGCTAATCCGTGGCAACCACGAGAGTCG
CCAGATCACGCAGGTATACGGCTTCTACGATGAGTGCATGAGAAAGTACG
GAAACGCCAACGTGTGGCGCTACTGTACCGAAGTCTTCGACTACCTTGCA
CTGGGTGCCCTCATTAATGGCAGTGCCTTCTGCGTGCACGGTGGCCTGTC
GCCTAGTATCAACGCCCTCGACCAGATTCGAGCCATCGATCGAAAGCAAG
AGGTGCCTCACGACGGTGCCATGTGCGATTTGTTATGGAGCGATCCGGAC
GACATTAAGGGCTGGGCTGTGTCCCCGCGCGGCGCAGGCTATCTTTTTGG
AGGCGACATTGTTGACAAGTTCAACCATTTTAATGACTTGCAACTCATCG
CCCGAGCGCATCAGCTTGTCATGGAAGGCTACAAGAGCATGTTTAACGAC
ACTCTCGTCACAGTGTGGTCTGCTCCAAACTATTGCTATCGCTGCGGCAA
TGTGGCCGCCATTCTAACTCTGGATGACAAACTTCAGCGACAGTTTAACG
TCTTCAATGCTGCTTCTCAAGAAGTTCGTGGAACTACATCCAAGCGCCCC
GCTCCGGAATATTTCTTGTAA
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