Ggra3946.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3946.t1
Unique NameGgra3946.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:182649..183635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3946Ggra3946Gracilaria gracilis GNS1m malegenetig00000908_pilon 182649..183635 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3946.t1.stop1Ggra3946.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 182649..182651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3946.t1.CDS1Ggra3946.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 182649..183635 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3946.t1.exon1Ggra3946.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 182649..183635 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3946.t1.start1Ggra3946.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 183633..183635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3946.t1Ggra3946.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 182649..183635 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3946.t1 ID=Ggra3946.t1|Name=Ggra3946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MKFVSLVLILFLLLQSVISQTPEAPEAPAAPVAPAEPSQTAESSASGTNG
FGFGSGSPGSGGGGGFGSNGGAGSGGGSGTALGGSGGGVGVSGGSSAVGS
GCTTGSCGGGSAIGDMSDGLTNGTKSASNGFGFGSGAPGSGGGGGFGANG
GGGGGGGGGDKQGGTGGGGGASDGAKAVGSAATNTSTGGGVVTGINVTPL
PLFVPADSSAEMPSPSPSTTTTSSTEALPPRSSTSEEDPFAATGEEDPFT
ATATSQSDTGAPPTAVAATDIASNEKREFETKTTKGNKVTKHTKIVTAIP
PRTTPISRGSGLRPRMSPIAVRSIYMND*
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spliced messenger RNA

>Ggra3946.t1 ID=Ggra3946.t1|Name=Ggra3946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000908_pilon:182649..183635- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTGTGTCTCTCGTACTCATCCTGTTTCTTCTACTTCAAAGTGT
CATCTCTCAAACACCTGAAGCACCTGAAGCACCCGCTGCACCAGTCGCCC
CAGCTGAGCCATCCCAAACTGCCGAATCTTCTGCCTCTGGCACTAATGGG
TTTGGCTTCGGCTCTGGGTCTCCAGGTTCCGGTGGTGGCGGTGGGTTCGG
TTCAAACGGAGGAGCAGGTTCTGGCGGCGGATCTGGAACAGCGCTAGGTG
GCTCTGGAGGTGGTGTTGGTGTATCTGGCGGCTCCTCTGCTGTAGGATCT
GGATGTACAACCGGCTCATGTGGAGGCGGTTCCGCTATCGGGGACATGTC
TGATGGTCTCACAAATGGAACCAAATCGGCGTCCAATGGATTTGGATTCG
GTTCTGGTGCACCTGGAAGTGGTGGTGGAGGAGGTTTCGGCGCCAATGGC
GGAGGTGGCGGAGGTGGCGGTGGAGGTGACAAGCAAGGCGGAACAGGGGG
TGGCGGTGGTGCTTCAGATGGTGCCAAGGCTGTTGGTTCCGCTGCCACGA
ATACTTCCACCGGTGGAGGAGTCGTTACTGGAATTAATGTGACACCGCTG
CCGTTGTTCGTCCCAGCTGATTCTTCTGCGGAAATGCCATCCCCTTCACC
GAGCACTACCACAACCTCCTCGACAGAGGCTTTACCACCGAGGTCTTCCA
CATCAGAAGAAGATCCATTTGCTGCCACAGGAGAGGAAGATCCGTTTACT
GCCACAGCCACATCACAGTCAGATACAGGGGCTCCTCCAACGGCCGTGGC
TGCAACAGATATCGCCTCGAACGAGAAGAGGGAGTTCGAAACAAAAACAA
CGAAAGGTAACAAAGTGACAAAACACACCAAAATCGTCACTGCTATTCCT
CCGCGAACAACACCGATTTCCCGTGGCTCAGGGCTTCGACCAAGGATGTC
ACCTATCGCCGTGAGATCGATATATATGAACGACTGA
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protein sequence of Ggra3946.t1

>Ggra3946.t1 ID=Ggra3946.t1|Name=Ggra3946.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MKFVSLVLILFLLLQSVISQTPEAPEAPAAPVAPAEPSQTAESSASGTNG
FGFGSGSPGSGGGGGFGSNGGAGSGGGSGTALGGSGGGVGVSGGSSAVGS
GCTTGSCGGGSAIGDMSDGLTNGTKSASNGFGFGSGAPGSGGGGGFGANG
GGGGGGGGGDKQGGTGGGGGASDGAKAVGSAATNTSTGGGVVTGINVTPL
PLFVPADSSAEMPSPSPSTTTTSSTEALPPRSSTSEEDPFAATGEEDPFT
ATATSQSDTGAPPTAVAATDIASNEKREFETKTTKGNKVTKHTKIVTAIP
PRTTPISRGSGLRPRMSPIAVRSIYMND*
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mRNA from alignment at tig00000908_pilon:182649..183635-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3946.t1 ID=Ggra3946.t1|Name=Ggra3946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000908_pilon:182649..183635- (Gracilaria gracilis GNS1m male)
ATGAAGTTTGTGTCTCTCGTACTCATCCTGTTTCTTCTACTTCAAAGTGT
CATCTCTCAAACACCTGAAGCACCTGAAGCACCCGCTGCACCAGTCGCCC
CAGCTGAGCCATCCCAAACTGCCGAATCTTCTGCCTCTGGCACTAATGGG
TTTGGCTTCGGCTCTGGGTCTCCAGGTTCCGGTGGTGGCGGTGGGTTCGG
TTCAAACGGAGGAGCAGGTTCTGGCGGCGGATCTGGAACAGCGCTAGGTG
GCTCTGGAGGTGGTGTTGGTGTATCTGGCGGCTCCTCTGCTGTAGGATCT
GGATGTACAACCGGCTCATGTGGAGGCGGTTCCGCTATCGGGGACATGTC
TGATGGTCTCACAAATGGAACCAAATCGGCGTCCAATGGATTTGGATTCG
GTTCTGGTGCACCTGGAAGTGGTGGTGGAGGAGGTTTCGGCGCCAATGGC
GGAGGTGGCGGAGGTGGCGGTGGAGGTGACAAGCAAGGCGGAACAGGGGG
TGGCGGTGGTGCTTCAGATGGTGCCAAGGCTGTTGGTTCCGCTGCCACGA
ATACTTCCACCGGTGGAGGAGTCGTTACTGGAATTAATGTGACACCGCTG
CCGTTGTTCGTCCCAGCTGATTCTTCTGCGGAAATGCCATCCCCTTCACC
GAGCACTACCACAACCTCCTCGACAGAGGCTTTACCACCGAGGTCTTCCA
CATCAGAAGAAGATCCATTTGCTGCCACAGGAGAGGAAGATCCGTTTACT
GCCACAGCCACATCACAGTCAGATACAGGGGCTCCTCCAACGGCCGTGGC
TGCAACAGATATCGCCTCGAACGAGAAGAGGGAGTTCGAAACAAAAACAA
CGAAAGGTAACAAAGTGACAAAACACACCAAAATCGTCACTGCTATTCCT
CCGCGAACAACACCGATTTCCCGTGGCTCAGGGCTTCGACCAAGGATGTC
ACCTATCGCCGTGAGATCGATATATATGAACGACTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:182649..183635-

>Ggra3946.t1 ID=Ggra3946.t1|Name=Ggra3946.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000908_pilon:182649..183635- (Gracilaria gracilis GNS1m male)
ATGAAGTTTGTGTCTCTCGTACTCATCCTGTTTCTTCTACTTCAAAGTGT
CATCTCTCAAACACCTGAAGCACCTGAAGCACCCGCTGCACCAGTCGCCC
CAGCTGAGCCATCCCAAACTGCCGAATCTTCTGCCTCTGGCACTAATGGG
TTTGGCTTCGGCTCTGGGTCTCCAGGTTCCGGTGGTGGCGGTGGGTTCGG
TTCAAACGGAGGAGCAGGTTCTGGCGGCGGATCTGGAACAGCGCTAGGTG
GCTCTGGAGGTGGTGTTGGTGTATCTGGCGGCTCCTCTGCTGTAGGATCT
GGATGTACAACCGGCTCATGTGGAGGCGGTTCCGCTATCGGGGACATGTC
TGATGGTCTCACAAATGGAACCAAATCGGCGTCCAATGGATTTGGATTCG
GTTCTGGTGCACCTGGAAGTGGTGGTGGAGGAGGTTTCGGCGCCAATGGC
GGAGGTGGCGGAGGTGGCGGTGGAGGTGACAAGCAAGGCGGAACAGGGGG
TGGCGGTGGTGCTTCAGATGGTGCCAAGGCTGTTGGTTCCGCTGCCACGA
ATACTTCCACCGGTGGAGGAGTCGTTACTGGAATTAATGTGACACCGCTG
CCGTTGTTCGTCCCAGCTGATTCTTCTGCGGAAATGCCATCCCCTTCACC
GAGCACTACCACAACCTCCTCGACAGAGGCTTTACCACCGAGGTCTTCCA
CATCAGAAGAAGATCCATTTGCTGCCACAGGAGAGGAAGATCCGTTTACT
GCCACAGCCACATCACAGTCAGATACAGGGGCTCCTCCAACGGCCGTGGC
TGCAACAGATATCGCCTCGAACGAGAAGAGGGAGTTCGAAACAAAAACAA
CGAAAGGTAACAAAGTGACAAAACACACCAAAATCGTCACTGCTATTCCT
CCGCGAACAACACCGATTTCCCGTGGCTCAGGGCTTCGACCAAGGATGTC
ACCTATCGCCGTGAGATCGATATATATGAACGACTGA
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