Ggra4037.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4037.t1
Unique NameGgra4037.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:419037..420488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_05695T0
Preferred nameDCP2
PFAMsDCP2,NUDIX
Max annot lvl4751|Fungi
KEGG rclassRC00002
KEGG koko:K12613,ko:K22073
KEGG ReactionR10815
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000166,GO:0000287,GO:0000288,GO:0000290,GO:0000291,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005845,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034063,GO:0034428,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0050072,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060260,GO:0060261,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0098745,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue3.02e-60
EggNOG OGsCOG0494@1|root,KOG2937@2759|Eukaryota,38CUB@33154|Opisthokonta,3NYHF@4751|Fungi
EC3.6.1.62
DescriptionDecapping Enzyme
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4037Ggra4037Gracilaria gracilis GNS1m malegenetig00000908_pilon 419037..420488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4037.t1.stop1Ggra4037.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 419037..419039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4037.t1.CDS1Ggra4037.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 419037..420488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4037.t1.exon1Ggra4037.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 419037..420488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4037.t1.start1Ggra4037.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 420486..420488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4037.t1Ggra4037.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 419037..420488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4037.t1 ID=Ggra4037.t1|Name=Ggra4037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MPASRTAANMSASKKSCTSPELLEVLDDLCMRFLVNLPAVEYESFERLFF
AIESAHWFYDDFYRDNNPSLPRLPLKHFAARLFDHTSLLKQYRNDVDRLV
AQFQSYKQEVPTCGAALLNPRMDKVLLVRGWGPTARWGFPKGKLAKDETE
LDAAVREVREETGFDMSRYVNKNTDYLDSLSSGRPCRIFIVTNVPEDTRF
ETQTRKEISDIEWVSISTLPDSPKAAKALNKQAEAEAKTSPRREKVKLFS
QNGVAAFTKRLKAWISRRQKAIRDSSKSMPNLEISLSNGRDYSTPRTKLK
ECSKPVVERVNENHSLRESSGDDSLPKKKTPPRRKTPKAKANQSSESRGT
GRKSRKDAALQEALRNMATFGTIGGTVLSDSERKQLFHRYVLETDRIAAE
KGLKDEFWPVPFVTSKDFTEEELREAQAVPMPAKNLFGDLNESQQSFGRA
SFIKHLVKKREPTETFVFNRDAIRAVMRAKSPP*
back to top

spliced messenger RNA

>Ggra4037.t1 ID=Ggra4037.t1|Name=Ggra4037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:419037..420488- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCGTCGCGTACCGCAGCGAACATGTCCGCCTCGAAAAAGTCATG
CACTTCGCCGGAGCTCTTGGAGGTGCTGGATGATCTGTGCATGCGCTTTC
TGGTCAACCTTCCGGCCGTGGAGTACGAATCGTTCGAACGTTTATTCTTC
GCAATTGAGTCTGCACATTGGTTTTACGATGACTTTTATCGCGATAACAA
CCCCTCATTGCCTCGTCTGCCGCTCAAGCACTTTGCCGCCAGACTGTTCG
ATCATACATCGCTACTGAAACAATACCGAAACGATGTAGACCGACTGGTT
GCCCAATTCCAGTCGTACAAGCAAGAGGTGCCAACATGCGGCGCTGCCTT
GCTCAACCCGCGCATGGACAAGGTTCTGCTGGTACGCGGCTGGGGCCCGA
CAGCGCGCTGGGGGTTTCCAAAGGGCAAGCTCGCCAAAGACGAGACCGAG
CTGGATGCCGCCGTGCGAGAAGTGCGCGAGGAGACTGGCTTCGACATGTC
TCGATACGTCAACAAGAACACCGACTACCTTGACTCGCTTTCCAGCGGCA
GGCCGTGTCGAATCTTCATCGTCACAAATGTACCAGAGGACACGCGCTTT
GAAACGCAGACCAGAAAAGAGATCTCTGACATTGAATGGGTCTCGATTTC
CACGCTGCCTGATTCGCCAAAGGCTGCGAAGGCTCTGAACAAACAGGCGG
AGGCTGAGGCGAAGACATCGCCGCGTCGAGAAAAGGTAAAGCTCTTCTCG
CAGAATGGAGTTGCTGCCTTTACCAAGCGACTCAAGGCCTGGATCTCGCG
ACGACAGAAGGCAATCAGGGACAGCTCAAAGTCAATGCCTAATCTTGAGA
TAAGCTTGTCCAATGGCAGAGATTACTCCACACCGAGAACGAAGCTGAAG
GAATGTAGCAAGCCGGTCGTCGAGCGAGTCAACGAAAACCACAGCTTGAG
AGAATCAAGTGGTGATGACAGTTTACCGAAGAAGAAGACACCGCCAAGAC
GAAAGACGCCCAAAGCCAAAGCGAACCAATCCTCTGAATCGAGGGGAACT
GGCAGAAAGTCACGCAAGGATGCGGCTTTACAGGAAGCCCTCCGAAACAT
GGCGACTTTCGGTACAATAGGTGGCACTGTCCTCAGCGACTCCGAAAGAA
AGCAGCTGTTTCATCGCTACGTCCTCGAAACCGATCGAATAGCTGCGGAA
AAGGGTTTGAAAGACGAGTTTTGGCCCGTGCCCTTCGTTACCAGCAAGGA
CTTCACCGAAGAAGAGCTTCGTGAGGCTCAGGCCGTGCCGATGCCCGCCA
AAAACCTGTTCGGTGATCTCAATGAATCACAACAAAGTTTCGGGAGAGCT
TCTTTCATAAAACACCTTGTCAAGAAAAGAGAACCTACGGAGACTTTTGT
GTTCAATAGAGATGCGATTCGAGCTGTTATGCGCGCAAAGAGCCCTCCCT
GA
back to top

protein sequence of Ggra4037.t1

>Ggra4037.t1 ID=Ggra4037.t1|Name=Ggra4037.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MPASRTAANMSASKKSCTSPELLEVLDDLCMRFLVNLPAVEYESFERLFF
AIESAHWFYDDFYRDNNPSLPRLPLKHFAARLFDHTSLLKQYRNDVDRLV
AQFQSYKQEVPTCGAALLNPRMDKVLLVRGWGPTARWGFPKGKLAKDETE
LDAAVREVREETGFDMSRYVNKNTDYLDSLSSGRPCRIFIVTNVPEDTRF
ETQTRKEISDIEWVSISTLPDSPKAAKALNKQAEAEAKTSPRREKVKLFS
QNGVAAFTKRLKAWISRRQKAIRDSSKSMPNLEISLSNGRDYSTPRTKLK
ECSKPVVERVNENHSLRESSGDDSLPKKKTPPRRKTPKAKANQSSESRGT
GRKSRKDAALQEALRNMATFGTIGGTVLSDSERKQLFHRYVLETDRIAAE
KGLKDEFWPVPFVTSKDFTEEELREAQAVPMPAKNLFGDLNESQQSFGRA
SFIKHLVKKREPTETFVFNRDAIRAVMRAKSPP*
back to top

mRNA from alignment at tig00000908_pilon:419037..420488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4037.t1 ID=Ggra4037.t1|Name=Ggra4037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:419037..420488- (Gracilaria gracilis GNS1m male)
ATGCCTGCGTCGCGTACCGCAGCGAACATGTCCGCCTCGAAAAAGTCATG
CACTTCGCCGGAGCTCTTGGAGGTGCTGGATGATCTGTGCATGCGCTTTC
TGGTCAACCTTCCGGCCGTGGAGTACGAATCGTTCGAACGTTTATTCTTC
GCAATTGAGTCTGCACATTGGTTTTACGATGACTTTTATCGCGATAACAA
CCCCTCATTGCCTCGTCTGCCGCTCAAGCACTTTGCCGCCAGACTGTTCG
ATCATACATCGCTACTGAAACAATACCGAAACGATGTAGACCGACTGGTT
GCCCAATTCCAGTCGTACAAGCAAGAGGTGCCAACATGCGGCGCTGCCTT
GCTCAACCCGCGCATGGACAAGGTTCTGCTGGTACGCGGCTGGGGCCCGA
CAGCGCGCTGGGGGTTTCCAAAGGGCAAGCTCGCCAAAGACGAGACCGAG
CTGGATGCCGCCGTGCGAGAAGTGCGCGAGGAGACTGGCTTCGACATGTC
TCGATACGTCAACAAGAACACCGACTACCTTGACTCGCTTTCCAGCGGCA
GGCCGTGTCGAATCTTCATCGTCACAAATGTACCAGAGGACACGCGCTTT
GAAACGCAGACCAGAAAAGAGATCTCTGACATTGAATGGGTCTCGATTTC
CACGCTGCCTGATTCGCCAAAGGCTGCGAAGGCTCTGAACAAACAGGCGG
AGGCTGAGGCGAAGACATCGCCGCGTCGAGAAAAGGTAAAGCTCTTCTCG
CAGAATGGAGTTGCTGCCTTTACCAAGCGACTCAAGGCCTGGATCTCGCG
ACGACAGAAGGCAATCAGGGACAGCTCAAAGTCAATGCCTAATCTTGAGA
TAAGCTTGTCCAATGGCAGAGATTACTCCACACCGAGAACGAAGCTGAAG
GAATGTAGCAAGCCGGTCGTCGAGCGAGTCAACGAAAACCACAGCTTGAG
AGAATCAAGTGGTGATGACAGTTTACCGAAGAAGAAGACACCGCCAAGAC
GAAAGACGCCCAAAGCCAAAGCGAACCAATCCTCTGAATCGAGGGGAACT
GGCAGAAAGTCACGCAAGGATGCGGCTTTACAGGAAGCCCTCCGAAACAT
GGCGACTTTCGGTACAATAGGTGGCACTGTCCTCAGCGACTCCGAAAGAA
AGCAGCTGTTTCATCGCTACGTCCTCGAAACCGATCGAATAGCTGCGGAA
AAGGGTTTGAAAGACGAGTTTTGGCCCGTGCCCTTCGTTACCAGCAAGGA
CTTCACCGAAGAAGAGCTTCGTGAGGCTCAGGCCGTGCCGATGCCCGCCA
AAAACCTGTTCGGTGATCTCAATGAATCACAACAAAGTTTCGGGAGAGCT
TCTTTCATAAAACACCTTGTCAAGAAAAGAGAACCTACGGAGACTTTTGT
GTTCAATAGAGATGCGATTCGAGCTGTTATGCGCGCAAAGAGCCCTCCCT
GA
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:419037..420488-

>Ggra4037.t1 ID=Ggra4037.t1|Name=Ggra4037.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:419037..420488- (Gracilaria gracilis GNS1m male)
ATGCCTGCGTCGCGTACCGCAGCGAACATGTCCGCCTCGAAAAAGTCATG
CACTTCGCCGGAGCTCTTGGAGGTGCTGGATGATCTGTGCATGCGCTTTC
TGGTCAACCTTCCGGCCGTGGAGTACGAATCGTTCGAACGTTTATTCTTC
GCAATTGAGTCTGCACATTGGTTTTACGATGACTTTTATCGCGATAACAA
CCCCTCATTGCCTCGTCTGCCGCTCAAGCACTTTGCCGCCAGACTGTTCG
ATCATACATCGCTACTGAAACAATACCGAAACGATGTAGACCGACTGGTT
GCCCAATTCCAGTCGTACAAGCAAGAGGTGCCAACATGCGGCGCTGCCTT
GCTCAACCCGCGCATGGACAAGGTTCTGCTGGTACGCGGCTGGGGCCCGA
CAGCGCGCTGGGGGTTTCCAAAGGGCAAGCTCGCCAAAGACGAGACCGAG
CTGGATGCCGCCGTGCGAGAAGTGCGCGAGGAGACTGGCTTCGACATGTC
TCGATACGTCAACAAGAACACCGACTACCTTGACTCGCTTTCCAGCGGCA
GGCCGTGTCGAATCTTCATCGTCACAAATGTACCAGAGGACACGCGCTTT
GAAACGCAGACCAGAAAAGAGATCTCTGACATTGAATGGGTCTCGATTTC
CACGCTGCCTGATTCGCCAAAGGCTGCGAAGGCTCTGAACAAACAGGCGG
AGGCTGAGGCGAAGACATCGCCGCGTCGAGAAAAGGTAAAGCTCTTCTCG
CAGAATGGAGTTGCTGCCTTTACCAAGCGACTCAAGGCCTGGATCTCGCG
ACGACAGAAGGCAATCAGGGACAGCTCAAAGTCAATGCCTAATCTTGAGA
TAAGCTTGTCCAATGGCAGAGATTACTCCACACCGAGAACGAAGCTGAAG
GAATGTAGCAAGCCGGTCGTCGAGCGAGTCAACGAAAACCACAGCTTGAG
AGAATCAAGTGGTGATGACAGTTTACCGAAGAAGAAGACACCGCCAAGAC
GAAAGACGCCCAAAGCCAAAGCGAACCAATCCTCTGAATCGAGGGGAACT
GGCAGAAAGTCACGCAAGGATGCGGCTTTACAGGAAGCCCTCCGAAACAT
GGCGACTTTCGGTACAATAGGTGGCACTGTCCTCAGCGACTCCGAAAGAA
AGCAGCTGTTTCATCGCTACGTCCTCGAAACCGATCGAATAGCTGCGGAA
AAGGGTTTGAAAGACGAGTTTTGGCCCGTGCCCTTCGTTACCAGCAAGGA
CTTCACCGAAGAAGAGCTTCGTGAGGCTCAGGCCGTGCCGATGCCCGCCA
AAAACCTGTTCGGTGATCTCAATGAATCACAACAAAGTTTCGGGAGAGCT
TCTTTCATAAAACACCTTGTCAAGAAAAGAGAACCTACGGAGACTTTTGT
GTTCAATAGAGATGCGATTCGAGCTGTTATGCGCGCAAAGAGCCCTCCCT
GA
back to top