Ggra3895.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3895.t1
Unique NameGgra3895.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:33311..33868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1382304.JNIL01000001_gene3207
Preferred namesodA
PFAMsSod_Fe_C,Sod_Fe_N
Max annot lvl91061|Bacilli
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Evalue2.46e-50
EggNOG OGsCOG0605@1|root,COG0605@2|Bacteria,1TPXT@1239|Firmicutes,4HA6U@91061|Bacilli,2781X@186823|Alicyclobacillaceae
EC1.15.1.1
DescriptionDestroys radicals which are normally produced within the cells and which are toxic to biological systems
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3895Ggra3895Gracilaria gracilis GNS1m malegenetig00000908_pilon 33311..33868 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3895.t1.start1Ggra3895.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 33311..33313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3895.t1.CDS1Ggra3895.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 33311..33868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3895.t1.exon1Ggra3895.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 33311..33868 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3895.t1.stop1Ggra3895.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 33866..33868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3895.t1Ggra3895.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 33311..33868 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3895.t1 ID=Ggra3895.t1|Name=Ggra3895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MRAHHDAHFAAYVNKLNAALAQLGDGAVNDDASLKMLMPKLNSVSDAALR
TQIRNNGGGYFNHKQFFETMTAGGSALSNTSALANHIDRQFGSFQKFETQ
FIDTAIGLFGSGFVWLVLDGDRLRITKYANQDNPLMDGDVLPVLGCDCWE
HAWYFQYGPKKADYIKQWWKVVHWSRVSDIYDRKV*
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spliced messenger RNA

>Ggra3895.t1 ID=Ggra3895.t1|Name=Ggra3895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000908_pilon:33311..33868+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCGCACCATGATGCCCATTTTGCAGCGTATGTGAACAAATTGAA
CGCTGCTTTGGCGCAGTTGGGTGATGGAGCTGTCAACGACGACGCTTCGT
TGAAGATGTTGATGCCTAAACTGAATTCTGTGAGCGATGCCGCTTTGAGA
ACGCAGATAAGGAATAACGGCGGAGGCTATTTCAATCACAAGCAATTCTT
TGAAACTATGACCGCTGGCGGATCTGCGTTATCGAACACAAGCGCGCTTG
CTAACCATATTGACCGCCAGTTTGGATCGTTTCAAAAGTTTGAGACCCAG
TTCATTGACACTGCTATCGGTTTGTTCGGGTCGGGCTTTGTTTGGCTCGT
ACTTGACGGTGATCGATTAAGGATCACTAAATACGCCAATCAGGATAATC
CGCTCATGGATGGCGATGTTCTTCCAGTGCTAGGCTGTGATTGTTGGGAA
CATGCTTGGTATTTTCAATACGGTCCGAAGAAAGCCGATTACATCAAGCA
GTGGTGGAAGGTAGTGCACTGGTCTAGAGTGAGCGATATTTACGACCGAA
AGGTGTGA
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protein sequence of Ggra3895.t1

>Ggra3895.t1 ID=Ggra3895.t1|Name=Ggra3895.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MRAHHDAHFAAYVNKLNAALAQLGDGAVNDDASLKMLMPKLNSVSDAALR
TQIRNNGGGYFNHKQFFETMTAGGSALSNTSALANHIDRQFGSFQKFETQ
FIDTAIGLFGSGFVWLVLDGDRLRITKYANQDNPLMDGDVLPVLGCDCWE
HAWYFQYGPKKADYIKQWWKVVHWSRVSDIYDRKV*
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mRNA from alignment at tig00000908_pilon:33311..33868+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3895.t1 ID=Ggra3895.t1|Name=Ggra3895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000908_pilon:33311..33868+ (Gracilaria gracilis GNS1m male)
ATGAGGGCGCACCATGATGCCCATTTTGCAGCGTATGTGAACAAATTGAA
CGCTGCTTTGGCGCAGTTGGGTGATGGAGCTGTCAACGACGACGCTTCGT
TGAAGATGTTGATGCCTAAACTGAATTCTGTGAGCGATGCCGCTTTGAGA
ACGCAGATAAGGAATAACGGCGGAGGCTATTTCAATCACAAGCAATTCTT
TGAAACTATGACCGCTGGCGGATCTGCGTTATCGAACACAAGCGCGCTTG
CTAACCATATTGACCGCCAGTTTGGATCGTTTCAAAAGTTTGAGACCCAG
TTCATTGACACTGCTATCGGTTTGTTCGGGTCGGGCTTTGTTTGGCTCGT
ACTTGACGGTGATCGATTAAGGATCACTAAATACGCCAATCAGGATAATC
CGCTCATGGATGGCGATGTTCTTCCAGTGCTAGGCTGTGATTGTTGGGAA
CATGCTTGGTATTTTCAATACGGTCCGAAGAAAGCCGATTACATCAAGCA
GTGGTGGAAGGTAGTGCACTGGTCTAGAGTGAGCGATATTTACGACCGAA
AGGTGTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:33311..33868+

>Ggra3895.t1 ID=Ggra3895.t1|Name=Ggra3895.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000908_pilon:33311..33868+ (Gracilaria gracilis GNS1m male)
ATGAGGGCGCACCATGATGCCCATTTTGCAGCGTATGTGAACAAATTGAA
CGCTGCTTTGGCGCAGTTGGGTGATGGAGCTGTCAACGACGACGCTTCGT
TGAAGATGTTGATGCCTAAACTGAATTCTGTGAGCGATGCCGCTTTGAGA
ACGCAGATAAGGAATAACGGCGGAGGCTATTTCAATCACAAGCAATTCTT
TGAAACTATGACCGCTGGCGGATCTGCGTTATCGAACACAAGCGCGCTTG
CTAACCATATTGACCGCCAGTTTGGATCGTTTCAAAAGTTTGAGACCCAG
TTCATTGACACTGCTATCGGTTTGTTCGGGTCGGGCTTTGTTTGGCTCGT
ACTTGACGGTGATCGATTAAGGATCACTAAATACGCCAATCAGGATAATC
CGCTCATGGATGGCGATGTTCTTCCAGTGCTAGGCTGTGATTGTTGGGAA
CATGCTTGGTATTTTCAATACGGTCCGAAGAAAGCCGATTACATCAAGCA
GTGGTGGAAGGTAGTGCACTGGTCTAGAGTGAGCGATATTTACGACCGAA
AGGTGTGA
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