Ggra3961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3961.t1
Unique Name	Ggra3961.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	668

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:220098..222101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72658.Bostr.3359s0177.1.p
PFAMs	COG6
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20293
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006891,GO:0008150,GO:0008152,GO:0012505,GO:0016192,GO:0017119,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0070085,GO:0099023
Evalue	1.04e-103
EggNOG OGs	KOG3758@1\|root,KOG3758@2759\|Eukaryota,37RA3@33090\|Viridiplantae,3G8PF@35493\|Streptophyta,3HQCZ@3699\|Brassicales
Description	Conserved oligomeric complex COG6 (InterPro IPR010490)
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3961	Ggra3961	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 220098..222101 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3961.t1.start1	Ggra3961.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 220098..220100 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3961.t1.CDS1	Ggra3961.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 220098..222101 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3961.t1.exon1	Ggra3961.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 220098..222101 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3961.t1.stop1	Ggra3961.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 222099..222101 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3961.t1	Ggra3961.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 220098..222101 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:220098..222101+
coding sequence from alignment at tig00000908_pilon:220098..222101+

mRNA sequence

>Ggra3961.t1 ID=Ggra3961.t1|Name=Ggra3961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=668bp
MTTTTDGSEHQPPSSWAVVKMRSLLEAPIPAESPALLAAIREIQSFYTSN
SPATRRDISPMLARRAVESSKAVLDAFSDAHKQLQTVQGHITEMQKDVEA
LTKRLSGARSDASTVVSQTSQLRAKLSDAEYRAAVSTSFLNRFVLQGEHA
TALQSEEVDATFLETLHKLERIDHDSRFLLRTRNQRAGLEALEFAATKKE
EAYEKVFRFVQAQCGTLDVDAEENEHEAALLREAIRALRARPMLLRYCAE
EVGSARRASLVTRFVNALTKGGPGGMPRPIEMHAHDAMRYTNDMLAWMHQ
ALASEKELTNRLFTLEANAGDDTTRAHNEELALKVLNTVFDALCRPFRIR
FEQALEQTLPVVVLYRLASLLEFYATTMSHLLGKDAALPEMLMECHSIAM
YGFFSAWKSKMESFKLSGVGPSEDLTPPAAVNQSMTRLDEIMATLDASLV
PETARQGQIAAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDSMRM
PLMSYSFASNRVEQLTSLADHHIDNYIQLSTVIVLRRCGLAERARLLAEA
KGASPTSNRKPLSRVPGMDVEALSISVKNFYALLFGGSTIGSSEVLQPPH
VAKITNVRWRNRARAAVAVSLATTHFEIYKALQDPVNEYGSDAIAAVGLR
DPEKVKLILTNGAVDSK*

spliced messenger RNA

>Ggra3961.t1 ID=Ggra3961.t1|Name=Ggra3961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00000908_pilon:220098..222101+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACTACTACTGATGGCTCCGAGCACCAACCCCCATCGTCATGGGC
TGTTGTCAAGATGCGCTCCCTTCTTGAGGCTCCCATCCCAGCAGAATCAC
CTGCTCTACTGGCAGCAATCCGCGAAATTCAATCGTTCTACACCAGTAAT
TCGCCTGCAACCCGTCGCGATATTTCTCCTATGCTAGCGCGCCGTGCCGT
TGAGAGCAGTAAGGCCGTTCTAGACGCATTTTCTGATGCGCACAAGCAGC
TTCAAACTGTGCAGGGCCATATAACTGAAATGCAGAAGGATGTCGAGGCT
CTTACGAAGCGCTTGTCTGGAGCGCGCAGTGATGCGAGTACTGTCGTGTC
GCAGACCTCACAGTTGCGTGCAAAACTCTCTGATGCTGAGTATCGTGCCG
CTGTATCAACTTCGTTTCTTAACCGCTTTGTTTTGCAAGGTGAACATGCT
ACTGCTTTGCAGTCTGAGGAAGTAGATGCCACGTTTCTTGAAACCCTGCA
CAAGCTTGAGCGGATCGATCATGACTCCAGATTTTTGCTTCGAACTCGTA
ATCAAAGGGCTGGTTTGGAAGCCTTAGAGTTTGCTGCCACAAAGAAAGAA
GAAGCGTACGAAAAGGTATTTCGCTTTGTACAAGCGCAATGTGGTACTTT
AGACGTGGATGCGGAGGAGAATGAACACGAAGCTGCGCTTTTACGAGAAG
CGATTCGAGCCCTTCGCGCCCGCCCAATGTTGCTTCGATACTGTGCAGAG
GAGGTTGGTTCCGCCCGTCGTGCGTCTTTAGTTACTCGCTTCGTTAACGC
CCTTACAAAGGGTGGACCCGGTGGTATGCCCAGACCCATCGAAATGCACG
CGCACGACGCTATGAGATACACAAATGATATGCTCGCATGGATGCACCAA
GCTCTTGCTTCTGAAAAAGAACTAACGAACCGGTTATTCACTCTAGAGGC
CAACGCTGGAGACGATACCACCAGAGCTCATAACGAAGAACTGGCTCTCA
AGGTACTCAACACTGTATTTGACGCCCTTTGCAGACCTTTCCGCATTCGT
TTTGAGCAAGCGTTGGAGCAAACATTACCGGTTGTCGTTTTGTATCGACT
TGCAAGCCTGCTGGAGTTCTACGCCACCACCATGTCGCATCTTCTAGGTA
AGGACGCTGCTCTTCCAGAGATGCTGATGGAGTGTCATTCCATAGCCATG
TATGGATTCTTTTCGGCTTGGAAGTCTAAAATGGAATCGTTCAAACTTTC
TGGAGTTGGGCCTTCAGAGGATCTCACGCCTCCAGCTGCAGTGAACCAGT
CAATGACGCGTCTAGACGAGATCATGGCTACTTTGGATGCCAGTCTGGTA
CCTGAAACTGCTCGGCAAGGTCAGATTGCTGCTGTTCTTGAGGTCATTCT
AAACCCACTACAATCTTTGTGCGATAGCATGGCTTCACGAAAGCTGTCAG
CCGTGGAACGTCAGGTGTTCTTGGCCAATTGTATCGATTCTATGCGAATG
CCTCTTATGTCATACTCATTTGCCTCGAATAGAGTTGAGCAGCTCACTTC
GCTCGCTGACCACCACATTGATAATTACATTCAGCTGAGTACTGTTATTG
TATTAAGACGATGTGGGCTTGCTGAGAGAGCCAGACTCTTGGCTGAAGCG
AAAGGAGCCTCGCCGACGTCAAATCGGAAGCCTCTTTCAAGAGTGCCAGG
TATGGATGTGGAGGCGCTCTCAATATCCGTGAAGAACTTCTATGCCCTTT
TGTTCGGTGGCAGCACTATTGGGTCATCGGAAGTTCTTCAGCCACCGCAC
GTTGCAAAAATTACAAACGTTCGATGGAGGAACAGAGCTCGTGCGGCTGT
CGCAGTGAGCCTGGCTACGACACACTTCGAAATTTACAAAGCGCTTCAGG
ATCCTGTCAATGAATACGGGAGCGATGCCATTGCTGCCGTAGGACTGCGT
GACCCTGAGAAGGTCAAGCTAATACTAACAAACGGTGCTGTAGATTCGAA
ATAA

protein sequence of Ggra3961.t1

>Ggra3961.t1 ID=Ggra3961.t1|Name=Ggra3961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=668bp
MTTTTDGSEHQPPSSWAVVKMRSLLEAPIPAESPALLAAIREIQSFYTSN
SPATRRDISPMLARRAVESSKAVLDAFSDAHKQLQTVQGHITEMQKDVEA
LTKRLSGARSDASTVVSQTSQLRAKLSDAEYRAAVSTSFLNRFVLQGEHA
TALQSEEVDATFLETLHKLERIDHDSRFLLRTRNQRAGLEALEFAATKKE
EAYEKVFRFVQAQCGTLDVDAEENEHEAALLREAIRALRARPMLLRYCAE
EVGSARRASLVTRFVNALTKGGPGGMPRPIEMHAHDAMRYTNDMLAWMHQ
ALASEKELTNRLFTLEANAGDDTTRAHNEELALKVLNTVFDALCRPFRIR
FEQALEQTLPVVVLYRLASLLEFYATTMSHLLGKDAALPEMLMECHSIAM
YGFFSAWKSKMESFKLSGVGPSEDLTPPAAVNQSMTRLDEIMATLDASLV
PETARQGQIAAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDSMRM
PLMSYSFASNRVEQLTSLADHHIDNYIQLSTVIVLRRCGLAERARLLAEA
KGASPTSNRKPLSRVPGMDVEALSISVKNFYALLFGGSTIGSSEVLQPPH
VAKITNVRWRNRARAAVAVSLATTHFEIYKALQDPVNEYGSDAIAAVGLR
DPEKVKLILTNGAVDSK*

mRNA from alignment at tig00000908_pilon:220098..222101+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3961.t1 ID=Ggra3961.t1|Name=Ggra3961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00000908_pilon:220098..222101+ (Gracilaria gracilis GNS1m male)
ATGACCACTACTACTGATGGCTCCGAGCACCAACCCCCATCGTCATGGGC
TGTTGTCAAGATGCGCTCCCTTCTTGAGGCTCCCATCCCAGCAGAATCAC
CTGCTCTACTGGCAGCAATCCGCGAAATTCAATCGTTCTACACCAGTAAT
TCGCCTGCAACCCGTCGCGATATTTCTCCTATGCTAGCGCGCCGTGCCGT
TGAGAGCAGTAAGGCCGTTCTAGACGCATTTTCTGATGCGCACAAGCAGC
TTCAAACTGTGCAGGGCCATATAACTGAAATGCAGAAGGATGTCGAGGCT
CTTACGAAGCGCTTGTCTGGAGCGCGCAGTGATGCGAGTACTGTCGTGTC
GCAGACCTCACAGTTGCGTGCAAAACTCTCTGATGCTGAGTATCGTGCCG
CTGTATCAACTTCGTTTCTTAACCGCTTTGTTTTGCAAGGTGAACATGCT
ACTGCTTTGCAGTCTGAGGAAGTAGATGCCACGTTTCTTGAAACCCTGCA
CAAGCTTGAGCGGATCGATCATGACTCCAGATTTTTGCTTCGAACTCGTA
ATCAAAGGGCTGGTTTGGAAGCCTTAGAGTTTGCTGCCACAAAGAAAGAA
GAAGCGTACGAAAAGGTATTTCGCTTTGTACAAGCGCAATGTGGTACTTT
AGACGTGGATGCGGAGGAGAATGAACACGAAGCTGCGCTTTTACGAGAAG
CGATTCGAGCCCTTCGCGCCCGCCCAATGTTGCTTCGATACTGTGCAGAG
GAGGTTGGTTCCGCCCGTCGTGCGTCTTTAGTTACTCGCTTCGTTAACGC
CCTTACAAAGGGTGGACCCGGTGGTATGCCCAGACCCATCGAAATGCACG
CGCACGACGCTATGAGATACACAAATGATATGCTCGCATGGATGCACCAA
GCTCTTGCTTCTGAAAAAGAACTAACGAACCGGTTATTCACTCTAGAGGC
CAACGCTGGAGACGATACCACCAGAGCTCATAACGAAGAACTGGCTCTCA
AGGTACTCAACACTGTATTTGACGCCCTTTGCAGACCTTTCCGCATTCGT
TTTGAGCAAGCGTTGGAGCAAACATTACCGGTTGTCGTTTTGTATCGACT
TGCAAGCCTGCTGGAGTTCTACGCCACCACCATGTCGCATCTTCTAGGTA
AGGACGCTGCTCTTCCAGAGATGCTGATGGAGTGTCATTCCATAGCCATG
TATGGATTCTTTTCGGCTTGGAAGTCTAAAATGGAATCGTTCAAACTTTC
TGGAGTTGGGCCTTCAGAGGATCTCACGCCTCCAGCTGCAGTGAACCAGT
CAATGACGCGTCTAGACGAGATCATGGCTACTTTGGATGCCAGTCTGGTA
CCTGAAACTGCTCGGCAAGGTCAGATTGCTGCTGTTCTTGAGGTCATTCT
AAACCCACTACAATCTTTGTGCGATAGCATGGCTTCACGAAAGCTGTCAG
CCGTGGAACGTCAGGTGTTCTTGGCCAATTGTATCGATTCTATGCGAATG
CCTCTTATGTCATACTCATTTGCCTCGAATAGAGTTGAGCAGCTCACTTC
GCTCGCTGACCACCACATTGATAATTACATTCAGCTGAGTACTGTTATTG
TATTAAGACGATGTGGGCTTGCTGAGAGAGCCAGACTCTTGGCTGAAGCG
AAAGGAGCCTCGCCGACGTCAAATCGGAAGCCTCTTTCAAGAGTGCCAGG
TATGGATGTGGAGGCGCTCTCAATATCCGTGAAGAACTTCTATGCCCTTT
TGTTCGGTGGCAGCACTATTGGGTCATCGGAAGTTCTTCAGCCACCGCAC
GTTGCAAAAATTACAAACGTTCGATGGAGGAACAGAGCTCGTGCGGCTGT
CGCAGTGAGCCTGGCTACGACACACTTCGAAATTTACAAAGCGCTTCAGG
ATCCTGTCAATGAATACGGGAGCGATGCCATTGCTGCCGTAGGACTGCGT
GACCCTGAGAAGGTCAAGCTAATACTAACAAACGGTGCTGTAGATTCGAA
ATAA

Coding sequence (CDS) from alignment at tig00000908_pilon:220098..222101+

>Ggra3961.t1 ID=Ggra3961.t1|Name=Ggra3961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2004bp|location=Sequence derived from alignment at tig00000908_pilon:220098..222101+ (Gracilaria gracilis GNS1m male)
ATGACCACTACTACTGATGGCTCCGAGCACCAACCCCCATCGTCATGGGC
TGTTGTCAAGATGCGCTCCCTTCTTGAGGCTCCCATCCCAGCAGAATCAC
CTGCTCTACTGGCAGCAATCCGCGAAATTCAATCGTTCTACACCAGTAAT
TCGCCTGCAACCCGTCGCGATATTTCTCCTATGCTAGCGCGCCGTGCCGT
TGAGAGCAGTAAGGCCGTTCTAGACGCATTTTCTGATGCGCACAAGCAGC
TTCAAACTGTGCAGGGCCATATAACTGAAATGCAGAAGGATGTCGAGGCT
CTTACGAAGCGCTTGTCTGGAGCGCGCAGTGATGCGAGTACTGTCGTGTC
GCAGACCTCACAGTTGCGTGCAAAACTCTCTGATGCTGAGTATCGTGCCG
CTGTATCAACTTCGTTTCTTAACCGCTTTGTTTTGCAAGGTGAACATGCT
ACTGCTTTGCAGTCTGAGGAAGTAGATGCCACGTTTCTTGAAACCCTGCA
CAAGCTTGAGCGGATCGATCATGACTCCAGATTTTTGCTTCGAACTCGTA
ATCAAAGGGCTGGTTTGGAAGCCTTAGAGTTTGCTGCCACAAAGAAAGAA
GAAGCGTACGAAAAGGTATTTCGCTTTGTACAAGCGCAATGTGGTACTTT
AGACGTGGATGCGGAGGAGAATGAACACGAAGCTGCGCTTTTACGAGAAG
CGATTCGAGCCCTTCGCGCCCGCCCAATGTTGCTTCGATACTGTGCAGAG
GAGGTTGGTTCCGCCCGTCGTGCGTCTTTAGTTACTCGCTTCGTTAACGC
CCTTACAAAGGGTGGACCCGGTGGTATGCCCAGACCCATCGAAATGCACG
CGCACGACGCTATGAGATACACAAATGATATGCTCGCATGGATGCACCAA
GCTCTTGCTTCTGAAAAAGAACTAACGAACCGGTTATTCACTCTAGAGGC
CAACGCTGGAGACGATACCACCAGAGCTCATAACGAAGAACTGGCTCTCA
AGGTACTCAACACTGTATTTGACGCCCTTTGCAGACCTTTCCGCATTCGT
TTTGAGCAAGCGTTGGAGCAAACATTACCGGTTGTCGTTTTGTATCGACT
TGCAAGCCTGCTGGAGTTCTACGCCACCACCATGTCGCATCTTCTAGGTA
AGGACGCTGCTCTTCCAGAGATGCTGATGGAGTGTCATTCCATAGCCATG
TATGGATTCTTTTCGGCTTGGAAGTCTAAAATGGAATCGTTCAAACTTTC
TGGAGTTGGGCCTTCAGAGGATCTCACGCCTCCAGCTGCAGTGAACCAGT
CAATGACGCGTCTAGACGAGATCATGGCTACTTTGGATGCCAGTCTGGTA
CCTGAAACTGCTCGGCAAGGTCAGATTGCTGCTGTTCTTGAGGTCATTCT
AAACCCACTACAATCTTTGTGCGATAGCATGGCTTCACGAAAGCTGTCAG
CCGTGGAACGTCAGGTGTTCTTGGCCAATTGTATCGATTCTATGCGAATG
CCTCTTATGTCATACTCATTTGCCTCGAATAGAGTTGAGCAGCTCACTTC
GCTCGCTGACCACCACATTGATAATTACATTCAGCTGAGTACTGTTATTG
TATTAAGACGATGTGGGCTTGCTGAGAGAGCCAGACTCTTGGCTGAAGCG
AAAGGAGCCTCGCCGACGTCAAATCGGAAGCCTCTTTCAAGAGTGCCAGG
TATGGATGTGGAGGCGCTCTCAATATCCGTGAAGAACTTCTATGCCCTTT
TGTTCGGTGGCAGCACTATTGGGTCATCGGAAGTTCTTCAGCCACCGCAC
GTTGCAAAAATTACAAACGTTCGATGGAGGAACAGAGCTCGTGCGGCTGT
CGCAGTGAGCCTGGCTACGACACACTTCGAAATTTACAAAGCGCTTCAGG
ATCCTGTCAATGAATACGGGAGCGATGCCATTGCTGCCGTAGGACTGCGT
GACCCTGAGAAGGTCAAGCTAATACTAACAAACGGTGCTGTAGATTCGAA
ATAA