Ggra4050.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4050.t1
Unique NameGgra4050.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:478191..479172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4050Ggra4050Gracilaria gracilis GNS1m malegenetig00000908_pilon 478191..479172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1Ggra4050.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 478191..479172 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1.start1Ggra4050.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 478191..478193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1.CDS1Ggra4050.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 478191..478371 +
Ggra4050.t1.CDS2Ggra4050.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 478454..479172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1.exon1Ggra4050.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 478191..478371 +
Ggra4050.t1.exon2Ggra4050.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 478454..479172 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1.intron1Ggra4050.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 478372..478453 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4050.t1.stop1Ggra4050.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 479170..479172 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4050.t1 ID=Ggra4050.t1|Name=Ggra4050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MFCYSRHSRFDYLIVTVILILCSKHIAAAAPEQELNSTKIANRTQLQPIA
KAQSCMTSSDCSGSCQCSTDTCYDSKVFATEVNKCRACFDDDDCVAEKCI
EVGSTGFCGDCATDAVRKSEQVCRPKNQPLPIAENGLQPPDCVETKWLKD
NGFSHGILRQRKVSKTLCMDGLPCGTEGHLLRSCSKAGDCQMVTYKQLCQ
MTGDCTVKYTEVSRLSAAMDWSMVRMETCGVSGMSVSLTSLSVRPDGGDL
GLSHLVAGLGEKLISAGLGHELDRIILLWDDLATNAEHLLRTAWTVSVN*
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spliced messenger RNA

>Ggra4050.t1 ID=Ggra4050.t1|Name=Ggra4050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000908_pilon:478191..479172+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTGCTATTCACGGCATTCGAGGTTCGACTATCTTATCGTTACCGT
CATTCTTATCCTGTGCAGCAAGCATATCGCAGCTGCAGCACCTGAACAAG
AGCTGAATTCCACTAAGATCGCCAACAGAACGCAGCTACAACCGATTGCT
AAAGCCCAATCGTGTATGACGAGCTCAGATTGTTCTGGTTCTTGTCAATG
TTCTACGGACACTTGCTACGACTCAAAAGTGTTTGCAACCGAAGTTAATA
AATGCAGGGCATGCTTCGACGATGACGATTGTGTAGCAGAAAAATGCATT
GAAGTCGGTAGCACGGGATTCTGTGGCGATTGTGCTACAGATGCTGTTCG
GAAATCTGAACAGGTCTGCCGACCCAAGAATCAACCATTACCTATTGCTG
AGAATGGACTGCAACCACCGGACTGCGTGGAGACGAAGTGGTTGAAGGAT
AATGGCTTCAGTCATGGCATTCTCCGACAGCGAAAGGTATCGAAGACGTT
GTGCATGGATGGACTACCGTGCGGCACAGAGGGTCATTTGCTTCGTTCCT
GCAGCAAGGCCGGAGATTGTCAGATGGTGACGTACAAGCAGTTGTGCCAG
ATGACGGGTGATTGCACGGTGAAATACACGGAGGTATCGCGTCTGAGCGC
GGCAATGGACTGGTCTATGGTGAGAATGGAGACGTGCGGCGTCAGTGGGA
TGAGTGTGAGCCTGACTAGTTTGAGCGTCAGACCGGACGGAGGGGACCTA
GGATTGAGCCATTTGGTGGCCGGACTTGGAGAGAAGCTCATTTCTGCGGG
GCTGGGGCACGAGCTCGACCGAATCATTCTGTTGTGGGATGACCTTGCGA
CGAACGCTGAACATCTGCTGAGAACCGCGTGGACAGTGTCTGTGAACTGA
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protein sequence of Ggra4050.t1

>Ggra4050.t1 ID=Ggra4050.t1|Name=Ggra4050.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MFCYSRHSRFDYLIVTVILILCSKHIAAAAPEQELNSTKIANRTQLQPIA
KAQSCMTSSDCSGSCQCSTDTCYDSKVFATEVNKCRACFDDDDCVAEKCI
EVGSTGFCGDCATDAVRKSEQVCRPKNQPLPIAENGLQPPDCVETKWLKD
NGFSHGILRQRKVSKTLCMDGLPCGTEGHLLRSCSKAGDCQMVTYKQLCQ
MTGDCTVKYTEVSRLSAAMDWSMVRMETCGVSGMSVSLTSLSVRPDGGDL
GLSHLVAGLGEKLISAGLGHELDRIILLWDDLATNAEHLLRTAWTVSVN*
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mRNA from alignment at tig00000908_pilon:478191..479172+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4050.t1 ID=Ggra4050.t1|Name=Ggra4050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=982bp|location=Sequence derived from alignment at tig00000908_pilon:478191..479172+ (Gracilaria gracilis GNS1m male)
ATGTTCTGCTATTCACGGCATTCGAGGTTCGACTATCTTATCGTTACCGT
CATTCTTATCCTGTGCAGCAAGCATATCGCAGCTGCAGCACCTGAACAAG
AGCTGAATTCCACTAAGATCGCCAACAGAACGCAGCTACAACCGATTGCT
AAAGCCCAATCGTGTATGACGAGCTCAGATTGTAAGTCTCTCCCAACTTC
AAAACTATACAACGCATCGTCAAAAATAAAATTCTGACAATCGTTGCAAT
TCTTCTGAGACAGGTTCTGGTTCTTGTCAATGTTCTACGGACACTTGCTA
CGACTCAAAAGTGTTTGCAACCGAAGTTAATAAATGCAGGGCATGCTTCG
ACGATGACGATTGTGTAGCAGAAAAATGCATTGAAGTCGGTAGCACGGGA
TTCTGTGGCGATTGTGCTACAGATGCTGTTCGGAAATCTGAACAGGTCTG
CCGACCCAAGAATCAACCATTACCTATTGCTGAGAATGGACTGCAACCAC
CGGACTGCGTGGAGACGAAGTGGTTGAAGGATAATGGCTTCAGTCATGGC
ATTCTCCGACAGCGAAAGGTATCGAAGACGTTGTGCATGGATGGACTACC
GTGCGGCACAGAGGGTCATTTGCTTCGTTCCTGCAGCAAGGCCGGAGATT
GTCAGATGGTGACGTACAAGCAGTTGTGCCAGATGACGGGTGATTGCACG
GTGAAATACACGGAGGTATCGCGTCTGAGCGCGGCAATGGACTGGTCTAT
GGTGAGAATGGAGACGTGCGGCGTCAGTGGGATGAGTGTGAGCCTGACTA
GTTTGAGCGTCAGACCGGACGGAGGGGACCTAGGATTGAGCCATTTGGTG
GCCGGACTTGGAGAGAAGCTCATTTCTGCGGGGCTGGGGCACGAGCTCGA
CCGAATCATTCTGTTGTGGGATGACCTTGCGACGAACGCTGAACATCTGC
TGAGAACCGCGTGGACAGTGTCTGTGAACTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:478191..479172+

>Ggra4050.t1 ID=Ggra4050.t1|Name=Ggra4050.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000908_pilon:478191..479172+ (Gracilaria gracilis GNS1m male)
ATGTTCTGCTATTCACGGCATTCGAGGTTCGACTATCTTATCGTTACCGT
CATTCTTATCCTGTGCAGCAAGCATATCGCAGCTGCAGCACCTGAACAAG
AGCTGAATTCCACTAAGATCGCCAACAGAACGCAGCTACAACCGATTGCT
AAAGCCCAATCGTGTATGACGAGCTCAGATTGTTCTGGTTCTTGTCAATG
TTCTACGGACACTTGCTACGACTCAAAAGTGTTTGCAACCGAAGTTAATA
AATGCAGGGCATGCTTCGACGATGACGATTGTGTAGCAGAAAAATGCATT
GAAGTCGGTAGCACGGGATTCTGTGGCGATTGTGCTACAGATGCTGTTCG
GAAATCTGAACAGGTCTGCCGACCCAAGAATCAACCATTACCTATTGCTG
AGAATGGACTGCAACCACCGGACTGCGTGGAGACGAAGTGGTTGAAGGAT
AATGGCTTCAGTCATGGCATTCTCCGACAGCGAAAGGTATCGAAGACGTT
GTGCATGGATGGACTACCGTGCGGCACAGAGGGTCATTTGCTTCGTTCCT
GCAGCAAGGCCGGAGATTGTCAGATGGTGACGTACAAGCAGTTGTGCCAG
ATGACGGGTGATTGCACGGTGAAATACACGGAGGTATCGCGTCTGAGCGC
GGCAATGGACTGGTCTATGGTGAGAATGGAGACGTGCGGCGTCAGTGGGA
TGAGTGTGAGCCTGACTAGTTTGAGCGTCAGACCGGACGGAGGGGACCTA
GGATTGAGCCATTTGGTGGCCGGACTTGGAGAGAAGCTCATTTCTGCGGG
GCTGGGGCACGAGCTCGACCGAATCATTCTGTTGTGGGATGACCTTGCGA
CGAACGCTGAACATCTGCTGAGAACCGCGTGGACAGTGTCTGTGAACTGA
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