Ggra3988.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3988.t1
Unique Name	Ggra3988.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:294324..295250 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706294.1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15281
KEGG TC	2.A.7.15
GOs	GO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue	8.97e-57
EggNOG OGs	COG5070@1\|root,KOG1444@2759\|Eukaryota
Description	nucleotide-sugar transmembrane transporter activity
COG category	GOU
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3988	Ggra3988	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 294324..295250 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3988.t1.stop1	Ggra3988.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 294324..294326 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3988.t1.CDS1	Ggra3988.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 294324..295250 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3988.t1.exon1	Ggra3988.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 294324..295250 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3988.t1.start1	Ggra3988.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 295248..295250 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3988.t1	Ggra3988.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 294324..295250 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:294324..295250-
coding sequence from alignment at tig00000908_pilon:294324..295250-

mRNA sequence

>Ggra3988.t1 ID=Ggra3988.t1|Name=Ggra3988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MVFAIVILSILHVVGVRRLRQARNDEFGVLVLPTALFTCNVVVGLSALSL
VNIPMFSAFRRLTLLFVMVAEYVMLKKTHSRGIVNCVVVMTIGAFVSAVD
DVSFSSVGYCLVLLNNVLTAGYLACIKRAMRDTEFDALALLYYIAVLGLP
FVATLVLTTGELAHVMAAFRTQPELSSWGFGISIILTASGAFLVNFSTSV
CTHVTSPLTTSVAGQVKNVVQTILGFFSWGFVPTTMNTVGLLVALGAQIW
FGYLKYMENKYADTGASSSDDGSEREEAVKDDEQRSLVRNEDGDDSNSGS
RSSRSSSA*

spliced messenger RNA

>Ggra3988.t1 ID=Ggra3988.t1|Name=Ggra3988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000908_pilon:294324..295250- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCGCCATTGTGATTCTATCCATACTGCACGTGGTGGGTGTACG
AAGACTGCGACAAGCTCGAAATGATGAATTTGGAGTGCTTGTGCTGCCGA
CAGCTCTGTTCACCTGCAACGTTGTGGTGGGGCTTTCCGCTCTGAGCTTG
GTGAATATTCCTATGTTCTCGGCGTTCCGTCGTCTAACATTGCTATTCGT
GATGGTGGCTGAATACGTGATGCTGAAGAAGACGCACAGCCGGGGGATCG
TAAACTGCGTGGTAGTGATGACGATTGGTGCATTTGTGTCGGCCGTGGAT
GACGTGAGCTTTTCAAGCGTGGGATACTGCCTGGTTCTGTTGAATAACGT
ACTAACGGCCGGGTATCTAGCATGCATCAAGAGGGCGATGAGAGACACAG
AATTCGACGCTCTGGCTCTGCTGTATTACATCGCAGTACTGGGGTTGCCA
TTCGTAGCCACGCTGGTATTGACAACAGGTGAATTAGCTCACGTGATGGC
TGCGTTCCGCACGCAGCCGGAACTGTCAAGTTGGGGGTTCGGTATCAGCA
TTATTCTGACGGCAAGCGGTGCGTTCCTGGTGAACTTCTCCACGAGTGTG
TGCACGCACGTAACGAGCCCGCTGACGACTTCGGTGGCCGGACAGGTGAA
GAATGTGGTGCAGACGATTCTTGGCTTCTTCAGTTGGGGGTTCGTGCCAA
CGACGATGAACACGGTGGGGCTGTTGGTGGCGCTCGGCGCGCAGATTTGG
TTCGGCTACCTCAAGTACATGGAGAACAAATACGCGGACACCGGCGCCAG
CAGCAGTGATGACGGCAGTGAGCGCGAAGAAGCGGTGAAAGACGACGAGC
AGCGGTCGCTTGTGCGGAACGAAGACGGTGACGATAGCAATAGCGGCTCA
CGGAGCTCCAGAAGCAGCAGCGCATAA

protein sequence of Ggra3988.t1

>Ggra3988.t1 ID=Ggra3988.t1|Name=Ggra3988.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MVFAIVILSILHVVGVRRLRQARNDEFGVLVLPTALFTCNVVVGLSALSL
VNIPMFSAFRRLTLLFVMVAEYVMLKKTHSRGIVNCVVVMTIGAFVSAVD
DVSFSSVGYCLVLLNNVLTAGYLACIKRAMRDTEFDALALLYYIAVLGLP
FVATLVLTTGELAHVMAAFRTQPELSSWGFGISIILTASGAFLVNFSTSV
CTHVTSPLTTSVAGQVKNVVQTILGFFSWGFVPTTMNTVGLLVALGAQIW
FGYLKYMENKYADTGASSSDDGSEREEAVKDDEQRSLVRNEDGDDSNSGS
RSSRSSSA*

mRNA from alignment at tig00000908_pilon:294324..295250-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3988.t1 ID=Ggra3988.t1|Name=Ggra3988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000908_pilon:294324..295250- (Gracilaria gracilis GNS1m male)
ATGGTGTTCGCCATTGTGATTCTATCCATACTGCACGTGGTGGGTGTACG
AAGACTGCGACAAGCTCGAAATGATGAATTTGGAGTGCTTGTGCTGCCGA
CAGCTCTGTTCACCTGCAACGTTGTGGTGGGGCTTTCCGCTCTGAGCTTG
GTGAATATTCCTATGTTCTCGGCGTTCCGTCGTCTAACATTGCTATTCGT
GATGGTGGCTGAATACGTGATGCTGAAGAAGACGCACAGCCGGGGGATCG
TAAACTGCGTGGTAGTGATGACGATTGGTGCATTTGTGTCGGCCGTGGAT
GACGTGAGCTTTTCAAGCGTGGGATACTGCCTGGTTCTGTTGAATAACGT
ACTAACGGCCGGGTATCTAGCATGCATCAAGAGGGCGATGAGAGACACAG
AATTCGACGCTCTGGCTCTGCTGTATTACATCGCAGTACTGGGGTTGCCA
TTCGTAGCCACGCTGGTATTGACAACAGGTGAATTAGCTCACGTGATGGC
TGCGTTCCGCACGCAGCCGGAACTGTCAAGTTGGGGGTTCGGTATCAGCA
TTATTCTGACGGCAAGCGGTGCGTTCCTGGTGAACTTCTCCACGAGTGTG
TGCACGCACGTAACGAGCCCGCTGACGACTTCGGTGGCCGGACAGGTGAA
GAATGTGGTGCAGACGATTCTTGGCTTCTTCAGTTGGGGGTTCGTGCCAA
CGACGATGAACACGGTGGGGCTGTTGGTGGCGCTCGGCGCGCAGATTTGG
TTCGGCTACCTCAAGTACATGGAGAACAAATACGCGGACACCGGCGCCAG
CAGCAGTGATGACGGCAGTGAGCGCGAAGAAGCGGTGAAAGACGACGAGC
AGCGGTCGCTTGTGCGGAACGAAGACGGTGACGATAGCAATAGCGGCTCA
CGGAGCTCCAGAAGCAGCAGCGCATAA

Coding sequence (CDS) from alignment at tig00000908_pilon:294324..295250-

>Ggra3988.t1 ID=Ggra3988.t1|Name=Ggra3988.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000908_pilon:294324..295250- (Gracilaria gracilis GNS1m male)
ATGGTGTTCGCCATTGTGATTCTATCCATACTGCACGTGGTGGGTGTACG
AAGACTGCGACAAGCTCGAAATGATGAATTTGGAGTGCTTGTGCTGCCGA
CAGCTCTGTTCACCTGCAACGTTGTGGTGGGGCTTTCCGCTCTGAGCTTG
GTGAATATTCCTATGTTCTCGGCGTTCCGTCGTCTAACATTGCTATTCGT
GATGGTGGCTGAATACGTGATGCTGAAGAAGACGCACAGCCGGGGGATCG
TAAACTGCGTGGTAGTGATGACGATTGGTGCATTTGTGTCGGCCGTGGAT
GACGTGAGCTTTTCAAGCGTGGGATACTGCCTGGTTCTGTTGAATAACGT
ACTAACGGCCGGGTATCTAGCATGCATCAAGAGGGCGATGAGAGACACAG
AATTCGACGCTCTGGCTCTGCTGTATTACATCGCAGTACTGGGGTTGCCA
TTCGTAGCCACGCTGGTATTGACAACAGGTGAATTAGCTCACGTGATGGC
TGCGTTCCGCACGCAGCCGGAACTGTCAAGTTGGGGGTTCGGTATCAGCA
TTATTCTGACGGCAAGCGGTGCGTTCCTGGTGAACTTCTCCACGAGTGTG
TGCACGCACGTAACGAGCCCGCTGACGACTTCGGTGGCCGGACAGGTGAA
GAATGTGGTGCAGACGATTCTTGGCTTCTTCAGTTGGGGGTTCGTGCCAA
CGACGATGAACACGGTGGGGCTGTTGGTGGCGCTCGGCGCGCAGATTTGG
TTCGGCTACCTCAAGTACATGGAGAACAAATACGCGGACACCGGCGCCAG
CAGCAGTGATGACGGCAGTGAGCGCGAAGAAGCGGTGAAAGACGACGAGC
AGCGGTCGCTTGTGCGGAACGAAGACGGTGACGATAGCAATAGCGGCTCA
CGGAGCTCCAGAAGCAGCAGCGCATAA