Ggra1872.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1872.t1
Unique NameGgra1872.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:120668..121378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP02602
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002,RC00017
KEGG koko:K15892,ko:K18678
KEGG ReactionR09849,R10659
KEGG Pathwayko00900,ko01130,map00900,map01130
Evalue4.81e-11
EggNOG OGsCOG0170@1|root,KOG4453@2759|Eukaryota,37MAD@33090|Viridiplantae,34HWV@3041|Chlorophyta
EC2.7.1.182,2.7.1.216
DescriptionPhytol kinase
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1872Ggra1872Gracilaria gracilis GNS1m malegenetig00000907_pilon 120668..121378 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1872.t1.stop1Ggra1872.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000907_pilon 120668..120670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1872.t1.CDS1Ggra1872.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000907_pilon 120668..121378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1872.t1.exon1Ggra1872.t1.exon1Gracilaria gracilis GNS1m maleexontig00000907_pilon 120668..121378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1872.t1.start1Ggra1872.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000907_pilon 121376..121378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1872.t1Ggra1872.t1Gracilaria gracilis GNS1m malepolypeptidetig00000907_pilon 120668..121378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1872.t1 ID=Ggra1872.t1|Name=Ggra1872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MALPLLLRALCSVAVSGAGAAAWTALLSRLSRSGRLSRAAVRKLMHMTTA
PLFLCTTALYPEHALSRLLAACVPLGFALRIARNPRTDALVRAVARGDSS
SSSSSSQRGDDAEATAAYGAATAALTALGWRWCAATYVGVAALCFGDASA
ALVGSSLRSPPLPYARHKSVAGTVACFAATLASSAAMLAVLPVRPLPRGA
LLLSAAVAALAETLPVQDNLSVPLCAFAAARLCCLL*
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spliced messenger RNA

>Ggra1872.t1 ID=Ggra1872.t1|Name=Ggra1872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000907_pilon:120668..121378- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGCCGTTGCTGCTGCGCGCGCTCTGCAGCGTGGCGGTGTCGGG
CGCGGGCGCGGCGGCGTGGACGGCGCTGCTGTCGCGGCTGTCGCGGAGCG
GCCGGCTATCGCGCGCAGCGGTGCGCAAGCTCATGCACATGACGACGGCG
CCGCTGTTCCTGTGCACGACGGCGCTGTACCCGGAGCACGCGCTGTCGCG
GCTGCTAGCGGCGTGCGTGCCGCTGGGCTTTGCGCTACGCATCGCGCGCA
ACCCGCGCACCGACGCGCTGGTGCGCGCGGTGGCGCGCGGCGACTCGTCG
TCGTCGTCGTCGTCGTCGCAGCGCGGCGACGACGCGGAAGCCACGGCGGC
GTACGGCGCGGCCACCGCCGCGCTCACCGCGCTGGGCTGGCGCTGGTGCG
CGGCGACGTACGTGGGCGTGGCGGCGCTTTGCTTTGGTGACGCGAGCGCG
GCGCTCGTAGGCTCGTCGCTACGCTCGCCGCCGCTGCCGTACGCGCGCCA
CAAGTCGGTGGCGGGCACGGTGGCGTGCTTCGCGGCCACGCTGGCGTCGT
CGGCCGCCATGCTCGCCGTGCTGCCCGTGCGCCCGTTGCCGCGCGGCGCG
CTGCTGCTCTCCGCCGCCGTGGCGGCGCTGGCAGAGACGCTGCCCGTGCA
GGACAACCTCAGCGTGCCGCTGTGCGCGTTTGCGGCGGCGCGGCTGTGTT
GTTTATTGTGA
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protein sequence of Ggra1872.t1

>Ggra1872.t1 ID=Ggra1872.t1|Name=Ggra1872.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MALPLLLRALCSVAVSGAGAAAWTALLSRLSRSGRLSRAAVRKLMHMTTA
PLFLCTTALYPEHALSRLLAACVPLGFALRIARNPRTDALVRAVARGDSS
SSSSSSQRGDDAEATAAYGAATAALTALGWRWCAATYVGVAALCFGDASA
ALVGSSLRSPPLPYARHKSVAGTVACFAATLASSAAMLAVLPVRPLPRGA
LLLSAAVAALAETLPVQDNLSVPLCAFAAARLCCLL*
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mRNA from alignment at tig00000907_pilon:120668..121378-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1872.t1 ID=Ggra1872.t1|Name=Ggra1872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000907_pilon:120668..121378- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCCGTTGCTGCTGCGCGCGCTCTGCAGCGTGGCGGTGTCGGG
CGCGGGCGCGGCGGCGTGGACGGCGCTGCTGTCGCGGCTGTCGCGGAGCG
GCCGGCTATCGCGCGCAGCGGTGCGCAAGCTCATGCACATGACGACGGCG
CCGCTGTTCCTGTGCACGACGGCGCTGTACCCGGAGCACGCGCTGTCGCG
GCTGCTAGCGGCGTGCGTGCCGCTGGGCTTTGCGCTACGCATCGCGCGCA
ACCCGCGCACCGACGCGCTGGTGCGCGCGGTGGCGCGCGGCGACTCGTCG
TCGTCGTCGTCGTCGTCGCAGCGCGGCGACGACGCGGAAGCCACGGCGGC
GTACGGCGCGGCCACCGCCGCGCTCACCGCGCTGGGCTGGCGCTGGTGCG
CGGCGACGTACGTGGGCGTGGCGGCGCTTTGCTTTGGTGACGCGAGCGCG
GCGCTCGTAGGCTCGTCGCTACGCTCGCCGCCGCTGCCGTACGCGCGCCA
CAAGTCGGTGGCGGGCACGGTGGCGTGCTTCGCGGCCACGCTGGCGTCGT
CGGCCGCCATGCTCGCCGTGCTGCCCGTGCGCCCGTTGCCGCGCGGCGCG
CTGCTGCTCTCCGCCGCCGTGGCGGCGCTGGCAGAGACGCTGCCCGTGCA
GGACAACCTCAGCGTGCCGCTGTGCGCGTTTGCGGCGGCGCGGCTGTGTT
GTTTATTGTGA
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Coding sequence (CDS) from alignment at tig00000907_pilon:120668..121378-

>Ggra1872.t1 ID=Ggra1872.t1|Name=Ggra1872.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000907_pilon:120668..121378- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCCGTTGCTGCTGCGCGCGCTCTGCAGCGTGGCGGTGTCGGG
CGCGGGCGCGGCGGCGTGGACGGCGCTGCTGTCGCGGCTGTCGCGGAGCG
GCCGGCTATCGCGCGCAGCGGTGCGCAAGCTCATGCACATGACGACGGCG
CCGCTGTTCCTGTGCACGACGGCGCTGTACCCGGAGCACGCGCTGTCGCG
GCTGCTAGCGGCGTGCGTGCCGCTGGGCTTTGCGCTACGCATCGCGCGCA
ACCCGCGCACCGACGCGCTGGTGCGCGCGGTGGCGCGCGGCGACTCGTCG
TCGTCGTCGTCGTCGTCGCAGCGCGGCGACGACGCGGAAGCCACGGCGGC
GTACGGCGCGGCCACCGCCGCGCTCACCGCGCTGGGCTGGCGCTGGTGCG
CGGCGACGTACGTGGGCGTGGCGGCGCTTTGCTTTGGTGACGCGAGCGCG
GCGCTCGTAGGCTCGTCGCTACGCTCGCCGCCGCTGCCGTACGCGCGCCA
CAAGTCGGTGGCGGGCACGGTGGCGTGCTTCGCGGCCACGCTGGCGTCGT
CGGCCGCCATGCTCGCCGTGCTGCCCGTGCGCCCGTTGCCGCGCGGCGCG
CTGCTGCTCTCCGCCGCCGTGGCGGCGCTGGCAGAGACGCTGCCCGTGCA
GGACAACCTCAGCGTGCCGCTGTGCGCGTTTGCGGCGGCGCGGCTGTGTT
GTTTATTGTGA
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