Ggra3422.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3422.t1
Unique Name	Ggra3422.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000905_pilon	contig	tig00000905_pilon:278105..279736 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3422	Ggra3422	Gracilaria gracilis GNS1m male	gene	tig00000905_pilon 278105..279736 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3422.t1.stop1	Ggra3422.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000905_pilon 278105..278107 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3422.t1.CDS1	Ggra3422.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000905_pilon 278105..279736 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3422.t1.exon1	Ggra3422.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000905_pilon 278105..279736 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3422.t1.start1	Ggra3422.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000905_pilon 279734..279736 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3422.t1	Ggra3422.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000905_pilon 278105..279736 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000905_pilon:278105..279736-
coding sequence from alignment at tig00000905_pilon:278105..279736-

mRNA sequence

>Ggra3422.t1 ID=Ggra3422.t1|Name=Ggra3422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MERGSRKEFLKNMLTEHVKPILQNVSRIDYNNVLSNQSADLSNSFSSYNQ
IVNAPNQLSSPNSSLSTYPHFQQFLNPLSNPSAAPHTASSAVAGVPNAAD
YGPPRPSPQRPSLIPTEVLEQVFTRPHSARFKLGDEGVQEACKGLSRVLH
PGDDKDLHKFGSQLCNSDGGAIAEDYLSCLQQRVPCFAVSYVQTKTFVGR
FKFSNEQWQNLHIALRALRQSGVTQCRIWLDQCLWLRDASQGAWAHTGIL
PYVLWPVISLGDKVVQGERTTASYERMWPFVEEVAGLWSLGVLVTSEMRG
KEASQGVRRSLSYNLRVKLEPEETMRLLLLNIFHGATDGLKTGWQEDVKE
LREMARWNVECSAQHVVVGVDWRKRIAGMERKARTVIITGLRLQQKSILS
PHVHGIYLDGSRKYVRGSWSGFDEWVSGNEVGTLTRYDQILLNIGGPVGI
HNVLSDKGEFQLLGQSSVTHAIWLLVAMDGRSSGITRGRVAWTKVMSGQA
SCLLQGSGGMEDPRIISLALSEQLGVPVKVFSVRCVRGTLEWC*

spliced messenger RNA

>Ggra3422.t1 ID=Ggra3422.t1|Name=Ggra3422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000905_pilon:278105..279736- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGAGGCAGCCGAAAGGAATTCCTTAAGAATATGCTAACCGAGCA
CGTTAAGCCGATTCTACAGAATGTCTCGCGTATTGACTACAACAACGTTC
TCAGCAATCAGTCTGCAGACCTGTCAAATTCATTCTCGTCGTACAACCAA
ATCGTCAACGCACCCAATCAGTTGTCCTCTCCAAACTCTTCGTTGAGTAC
GTATCCACACTTTCAACAGTTTCTCAACCCATTATCGAATCCCTCGGCTG
CGCCGCATACAGCCTCGAGTGCAGTTGCTGGTGTGCCAAACGCCGCCGAC
TACGGCCCTCCACGTCCTTCGCCTCAGCGTCCTTCGTTAATTCCCACTGA
GGTTTTGGAACAAGTGTTTACTCGCCCACATTCCGCGCGATTCAAGTTGG
GAGATGAAGGTGTACAAGAAGCGTGCAAGGGTTTGTCCCGTGTGCTGCAC
CCCGGTGACGATAAAGACCTCCACAAGTTTGGCTCTCAATTGTGCAACTC
CGACGGCGGCGCCATTGCCGAAGACTACCTGTCTTGCTTACAGCAACGCG
TACCATGCTTCGCGGTTTCGTATGTGCAGACCAAGACTTTTGTCGGCCGC
TTCAAGTTCTCTAACGAGCAGTGGCAGAATCTGCACATCGCGTTGCGGGC
TTTGCGTCAAAGTGGGGTGACTCAATGTCGCATATGGTTGGACCAGTGCT
TGTGGCTGCGCGATGCGAGCCAGGGCGCATGGGCGCATACGGGTATCCTA
CCGTATGTGTTGTGGCCGGTGATCAGCCTGGGCGACAAGGTGGTTCAGGG
TGAGCGGACGACGGCGAGCTACGAACGCATGTGGCCTTTTGTGGAGGAAG
TGGCGGGGCTGTGGTCGCTTGGCGTGTTGGTGACGAGCGAGATGCGAGGA
AAAGAGGCGTCTCAGGGGGTCAGGCGATCGCTGTCGTACAACCTTAGAGT
GAAGCTGGAGCCGGAAGAAACTATGAGGCTTTTGTTACTAAACATATTTC
ACGGTGCAACCGATGGGTTAAAGACAGGGTGGCAAGAGGATGTGAAGGAA
CTACGGGAGATGGCACGATGGAATGTTGAATGTTCGGCACAACATGTGGT
TGTTGGGGTGGACTGGAGAAAGAGAATTGCAGGAATGGAACGAAAGGCAC
GTACGGTTATCATCACTGGTTTACGGTTGCAGCAGAAGAGCATACTTTCT
CCACATGTTCATGGCATCTACTTGGATGGGAGCCGCAAGTACGTGCGAGG
ATCGTGGAGCGGGTTTGACGAATGGGTCAGTGGGAATGAAGTCGGGACAC
TGACACGATACGACCAGATCCTTCTAAACATAGGGGGACCTGTCGGAATC
CACAATGTGCTCAGTGATAAGGGCGAGTTTCAGCTGCTTGGCCAAAGTTC
TGTTACACATGCCATCTGGTTGCTGGTGGCTATGGATGGGAGATCATCCG
GCATAACAAGAGGGAGGGTTGCTTGGACAAAAGTGATGAGCGGGCAAGCC
AGTTGTTTGTTGCAGGGTTCTGGGGGTATGGAGGATCCGCGGATCATATC
ATTGGCTTTGAGTGAGCAACTGGGCGTTCCCGTGAAAGTGTTCAGCGTGC
GATGTGTCCGAGGAACCCTGGAATGGTGTTGA

protein sequence of Ggra3422.t1

>Ggra3422.t1 ID=Ggra3422.t1|Name=Ggra3422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MERGSRKEFLKNMLTEHVKPILQNVSRIDYNNVLSNQSADLSNSFSSYNQ
IVNAPNQLSSPNSSLSTYPHFQQFLNPLSNPSAAPHTASSAVAGVPNAAD
YGPPRPSPQRPSLIPTEVLEQVFTRPHSARFKLGDEGVQEACKGLSRVLH
PGDDKDLHKFGSQLCNSDGGAIAEDYLSCLQQRVPCFAVSYVQTKTFVGR
FKFSNEQWQNLHIALRALRQSGVTQCRIWLDQCLWLRDASQGAWAHTGIL
PYVLWPVISLGDKVVQGERTTASYERMWPFVEEVAGLWSLGVLVTSEMRG
KEASQGVRRSLSYNLRVKLEPEETMRLLLLNIFHGATDGLKTGWQEDVKE
LREMARWNVECSAQHVVVGVDWRKRIAGMERKARTVIITGLRLQQKSILS
PHVHGIYLDGSRKYVRGSWSGFDEWVSGNEVGTLTRYDQILLNIGGPVGI
HNVLSDKGEFQLLGQSSVTHAIWLLVAMDGRSSGITRGRVAWTKVMSGQA
SCLLQGSGGMEDPRIISLALSEQLGVPVKVFSVRCVRGTLEWC*

mRNA from alignment at tig00000905_pilon:278105..279736-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3422.t1 ID=Ggra3422.t1|Name=Ggra3422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000905_pilon:278105..279736- (Gracilaria gracilis GNS1m male)
ATGGAGCGAGGCAGCCGAAAGGAATTCCTTAAGAATATGCTAACCGAGCA
CGTTAAGCCGATTCTACAGAATGTCTCGCGTATTGACTACAACAACGTTC
TCAGCAATCAGTCTGCAGACCTGTCAAATTCATTCTCGTCGTACAACCAA
ATCGTCAACGCACCCAATCAGTTGTCCTCTCCAAACTCTTCGTTGAGTAC
GTATCCACACTTTCAACAGTTTCTCAACCCATTATCGAATCCCTCGGCTG
CGCCGCATACAGCCTCGAGTGCAGTTGCTGGTGTGCCAAACGCCGCCGAC
TACGGCCCTCCACGTCCTTCGCCTCAGCGTCCTTCGTTAATTCCCACTGA
GGTTTTGGAACAAGTGTTTACTCGCCCACATTCCGCGCGATTCAAGTTGG
GAGATGAAGGTGTACAAGAAGCGTGCAAGGGTTTGTCCCGTGTGCTGCAC
CCCGGTGACGATAAAGACCTCCACAAGTTTGGCTCTCAATTGTGCAACTC
CGACGGCGGCGCCATTGCCGAAGACTACCTGTCTTGCTTACAGCAACGCG
TACCATGCTTCGCGGTTTCGTATGTGCAGACCAAGACTTTTGTCGGCCGC
TTCAAGTTCTCTAACGAGCAGTGGCAGAATCTGCACATCGCGTTGCGGGC
TTTGCGTCAAAGTGGGGTGACTCAATGTCGCATATGGTTGGACCAGTGCT
TGTGGCTGCGCGATGCGAGCCAGGGCGCATGGGCGCATACGGGTATCCTA
CCGTATGTGTTGTGGCCGGTGATCAGCCTGGGCGACAAGGTGGTTCAGGG
TGAGCGGACGACGGCGAGCTACGAACGCATGTGGCCTTTTGTGGAGGAAG
TGGCGGGGCTGTGGTCGCTTGGCGTGTTGGTGACGAGCGAGATGCGAGGA
AAAGAGGCGTCTCAGGGGGTCAGGCGATCGCTGTCGTACAACCTTAGAGT
GAAGCTGGAGCCGGAAGAAACTATGAGGCTTTTGTTACTAAACATATTTC
ACGGTGCAACCGATGGGTTAAAGACAGGGTGGCAAGAGGATGTGAAGGAA
CTACGGGAGATGGCACGATGGAATGTTGAATGTTCGGCACAACATGTGGT
TGTTGGGGTGGACTGGAGAAAGAGAATTGCAGGAATGGAACGAAAGGCAC
GTACGGTTATCATCACTGGTTTACGGTTGCAGCAGAAGAGCATACTTTCT
CCACATGTTCATGGCATCTACTTGGATGGGAGCCGCAAGTACGTGCGAGG
ATCGTGGAGCGGGTTTGACGAATGGGTCAGTGGGAATGAAGTCGGGACAC
TGACACGATACGACCAGATCCTTCTAAACATAGGGGGACCTGTCGGAATC
CACAATGTGCTCAGTGATAAGGGCGAGTTTCAGCTGCTTGGCCAAAGTTC
TGTTACACATGCCATCTGGTTGCTGGTGGCTATGGATGGGAGATCATCCG
GCATAACAAGAGGGAGGGTTGCTTGGACAAAAGTGATGAGCGGGCAAGCC
AGTTGTTTGTTGCAGGGTTCTGGGGGTATGGAGGATCCGCGGATCATATC
ATTGGCTTTGAGTGAGCAACTGGGCGTTCCCGTGAAAGTGTTCAGCGTGC
GATGTGTCCGAGGAACCCTGGAATGGTGTTGA

Coding sequence (CDS) from alignment at tig00000905_pilon:278105..279736-

>Ggra3422.t1 ID=Ggra3422.t1|Name=Ggra3422.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000905_pilon:278105..279736- (Gracilaria gracilis GNS1m male)
ATGGAGCGAGGCAGCCGAAAGGAATTCCTTAAGAATATGCTAACCGAGCA
CGTTAAGCCGATTCTACAGAATGTCTCGCGTATTGACTACAACAACGTTC
TCAGCAATCAGTCTGCAGACCTGTCAAATTCATTCTCGTCGTACAACCAA
ATCGTCAACGCACCCAATCAGTTGTCCTCTCCAAACTCTTCGTTGAGTAC
GTATCCACACTTTCAACAGTTTCTCAACCCATTATCGAATCCCTCGGCTG
CGCCGCATACAGCCTCGAGTGCAGTTGCTGGTGTGCCAAACGCCGCCGAC
TACGGCCCTCCACGTCCTTCGCCTCAGCGTCCTTCGTTAATTCCCACTGA
GGTTTTGGAACAAGTGTTTACTCGCCCACATTCCGCGCGATTCAAGTTGG
GAGATGAAGGTGTACAAGAAGCGTGCAAGGGTTTGTCCCGTGTGCTGCAC
CCCGGTGACGATAAAGACCTCCACAAGTTTGGCTCTCAATTGTGCAACTC
CGACGGCGGCGCCATTGCCGAAGACTACCTGTCTTGCTTACAGCAACGCG
TACCATGCTTCGCGGTTTCGTATGTGCAGACCAAGACTTTTGTCGGCCGC
TTCAAGTTCTCTAACGAGCAGTGGCAGAATCTGCACATCGCGTTGCGGGC
TTTGCGTCAAAGTGGGGTGACTCAATGTCGCATATGGTTGGACCAGTGCT
TGTGGCTGCGCGATGCGAGCCAGGGCGCATGGGCGCATACGGGTATCCTA
CCGTATGTGTTGTGGCCGGTGATCAGCCTGGGCGACAAGGTGGTTCAGGG
TGAGCGGACGACGGCGAGCTACGAACGCATGTGGCCTTTTGTGGAGGAAG
TGGCGGGGCTGTGGTCGCTTGGCGTGTTGGTGACGAGCGAGATGCGAGGA
AAAGAGGCGTCTCAGGGGGTCAGGCGATCGCTGTCGTACAACCTTAGAGT
GAAGCTGGAGCCGGAAGAAACTATGAGGCTTTTGTTACTAAACATATTTC
ACGGTGCAACCGATGGGTTAAAGACAGGGTGGCAAGAGGATGTGAAGGAA
CTACGGGAGATGGCACGATGGAATGTTGAATGTTCGGCACAACATGTGGT
TGTTGGGGTGGACTGGAGAAAGAGAATTGCAGGAATGGAACGAAAGGCAC
GTACGGTTATCATCACTGGTTTACGGTTGCAGCAGAAGAGCATACTTTCT
CCACATGTTCATGGCATCTACTTGGATGGGAGCCGCAAGTACGTGCGAGG
ATCGTGGAGCGGGTTTGACGAATGGGTCAGTGGGAATGAAGTCGGGACAC
TGACACGATACGACCAGATCCTTCTAAACATAGGGGGACCTGTCGGAATC
CACAATGTGCTCAGTGATAAGGGCGAGTTTCAGCTGCTTGGCCAAAGTTC
TGTTACACATGCCATCTGGTTGCTGGTGGCTATGGATGGGAGATCATCCG
GCATAACAAGAGGGAGGGTTGCTTGGACAAAAGTGATGAGCGGGCAAGCC
AGTTGTTTGTTGCAGGGTTCTGGGGGTATGGAGGATCCGCGGATCATATC
ATTGGCTTTGAGTGAGCAACTGGGCGTTCCCGTGAAAGTGTTCAGCGTGC
GATGTGTCCGAGGAACCCTGGAATGGTGTTGA