Ggra10576.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10576.t1
Unique NameGgra10576.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:299088..299624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010556359.1
PFAMsPAP_fibrillin
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue8.23e-30
EggNOG OGs28JPH@1|root,2QSMF@2759|Eukaryota,37Q51@33090|Viridiplantae,3GDZE@35493|Streptophyta,3HU6M@3699|Brassicales
Descriptionplastid-lipid-associated protein 4, chloroplastic
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10576Ggra10576Gracilaria gracilis GNS1m malegenetig00000904_pilon 299088..299624 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10576.t1.start1Ggra10576.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 299088..299090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10576.t1.CDS1Ggra10576.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 299088..299624 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10576.t1.exon1Ggra10576.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 299088..299624 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10576.t1.stop1Ggra10576.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 299622..299624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10576.t1Ggra10576.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 299088..299624 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MNVQVPSAFKQTLLDLVQPLNFGRAVAKDPVKQQEIEDLARQVEATNPSL
SPGTDPNLSGVWDMIYTTSKSILAVDNPAFLQSSRIVQEINAEELKGSNA
ETFKFGPLQFVNAVNFELSAASPTKFDVNFVQFIVFNLLRFNVRENKRFT
GWLQVTYLDENLRISRGNRGNLFILVKK*
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spliced messenger RNA

>Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA
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protein sequence of Ggra10576.t1

>Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MNVQVPSAFKQTLLDLVQPLNFGRAVAKDPVKQQEIEDLARQVEATNPSL
SPGTDPNLSGVWDMIYTTSKSILAVDNPAFLQSSRIVQEINAEELKGSNA
ETFKFGPLQFVNAVNFELSAASPTKFDVNFVQFIVFNLLRFNVRENKRFT
GWLQVTYLDENLRISRGNRGNLFILVKK*
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mRNA from alignment at tig00000904_pilon:299088..299624+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:299088..299624+

>Ggra10576.t1 ID=Ggra10576.t1|Name=Ggra10576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000904_pilon:299088..299624+ (Gracilaria gracilis GNS1m male)
ATGAACGTTCAAGTACCAAGCGCATTCAAACAAACCCTCCTAGATCTGGT
ACAACCTCTCAACTTCGGACGCGCAGTAGCGAAAGACCCCGTCAAACAGC
AGGAAATCGAAGACTTGGCACGACAAGTAGAGGCCACAAACCCTTCTCTC
AGTCCTGGTACAGACCCGAATTTGTCAGGAGTGTGGGACATGATTTACAC
AACGTCGAAGAGCATTCTGGCTGTCGATAATCCCGCTTTTCTACAAAGTT
CCCGTATTGTACAGGAAATCAACGCTGAGGAACTGAAGGGAAGTAACGCT
GAAACGTTCAAGTTTGGGCCTTTGCAGTTTGTCAACGCTGTCAATTTTGA
GCTCTCTGCAGCCTCACCAACCAAGTTTGATGTCAACTTTGTCCAGTTTA
TCGTGTTCAATTTGCTAAGATTTAACGTGAGGGAAAATAAGCGCTTCACT
GGCTGGCTGCAAGTCACATACCTTGATGAAAACCTTCGCATTTCTAGAGG
AAATCGAGGTAACCTTTTCATCCTCGTTAAGAAATGA
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