Ggra10578.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10578.t1
Unique NameGgra10578.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:302396..303445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog135651.CBN15249
PFAMsPA,zf-RING_11,zf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K15692
Evalue0.000124
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,38D33@33154|Opisthokonta,3B9NR@33208|Metazoa,3CXX9@33213|Bilateria,40CUN@6231|Nematoda,1KVJQ@119089|Chromadorea,40X9A@6236|Rhabditida
EC2.3.2.27
DescriptionRING-like zinc finger
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10578Ggra10578Gracilaria gracilis GNS1m malegenetig00000904_pilon 302396..303445 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10578.t1.stop1Ggra10578.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 302396..302398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10578.t1.CDS1Ggra10578.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 302396..303445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10578.t1.exon1Ggra10578.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 302396..303445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10578.t1.start1Ggra10578.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 303443..303445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10578.t1Ggra10578.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 302396..303445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10578.t1 ID=Ggra10578.t1|Name=Ggra10578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MALHRTHAFWALLWLVMFAVALSVNLVQFPSYEQVQCEQKSDLSSTVVKR
EPPDSNRRSICVWTANVTVTQDSAMFDTEARTKRTPCDQPPVVFRQCWLS
ESNHTFLPIDMDDANEYEQAARVFSRLRLAFVVFAVFFASFFFYVILRSF
DARLFSCCHSTFSSRNDARSTADNEPYVRRPSSNFSVTTSRHDIIMPSST
LQHRITLFIQQHSMTADQVKQIAHEQWTCCICLEQVAEAPRLPHIVRLSC
SHAIHAECLRMWLSKGRAVCCICNAPVFSASLLDCNDSVVPSSPSFADNR
PTDSLIVEITDYSPSSPATSDIVQTSQPQSDSFPVQPNSARDDHSSAIV*
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spliced messenger RNA

>Ggra10578.t1 ID=Ggra10578.t1|Name=Ggra10578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000904_pilon:302396..303445- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGCACCGTACTCACGCCTTCTGGGCGCTGCTCTGGCTCGTCAT
GTTCGCCGTCGCCCTGTCCGTCAACCTCGTGCAGTTCCCGTCCTACGAGC
AGGTGCAATGCGAGCAGAAGAGTGACCTCAGTTCCACCGTTGTCAAGAGA
GAGCCGCCCGACTCGAACCGCCGTAGCATCTGCGTGTGGACCGCAAACGT
CACCGTCACGCAGGACAGCGCCATGTTCGACACCGAAGCCAGGACAAAGC
GCACTCCGTGCGATCAACCGCCCGTCGTGTTTCGCCAGTGTTGGCTTTCT
GAGTCCAATCACACCTTCCTTCCCATTGACATGGACGATGCCAACGAGTA
TGAACAAGCAGCTCGCGTTTTCTCCCGTCTGCGTCTGGCCTTCGTTGTGT
TTGCTGTTTTCTTTGCCTCCTTCTTCTTCTACGTCATTCTTCGCTCCTTC
GATGCACGCCTGTTTAGTTGCTGTCACTCCACTTTTTCTTCCAGAAACGA
TGCTCGTAGCACCGCCGACAATGAGCCCTATGTGCGTCGTCCTTCGTCTA
ACTTCTCCGTTACAACTTCTCGTCATGATATCATTATGCCTTCTTCTACG
CTTCAACACCGCATCACCCTCTTTATCCAACAGCACTCCATGACTGCCGA
CCAGGTCAAACAGATTGCACATGAGCAGTGGACTTGTTGTATTTGTCTTG
AACAAGTGGCAGAAGCTCCGCGGCTGCCTCACATAGTGCGCCTCAGCTGT
TCTCATGCCATACACGCCGAGTGTCTCCGAATGTGGCTCTCTAAAGGACG
CGCTGTCTGTTGCATCTGCAACGCTCCAGTGTTCTCTGCTTCTCTATTAG
ATTGCAATGACTCTGTTGTACCAAGTTCGCCGTCCTTCGCTGACAACCGT
CCAACGGATTCTCTAATAGTTGAAATAACCGACTACTCCCCATCATCACC
TGCAACCTCTGATATAGTGCAAACCTCTCAACCACAATCCGATTCATTCC
CTGTTCAACCCAACTCTGCACGAGATGATCACTCATCTGCCATTGTTTGA
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protein sequence of Ggra10578.t1

>Ggra10578.t1 ID=Ggra10578.t1|Name=Ggra10578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MALHRTHAFWALLWLVMFAVALSVNLVQFPSYEQVQCEQKSDLSSTVVKR
EPPDSNRRSICVWTANVTVTQDSAMFDTEARTKRTPCDQPPVVFRQCWLS
ESNHTFLPIDMDDANEYEQAARVFSRLRLAFVVFAVFFASFFFYVILRSF
DARLFSCCHSTFSSRNDARSTADNEPYVRRPSSNFSVTTSRHDIIMPSST
LQHRITLFIQQHSMTADQVKQIAHEQWTCCICLEQVAEAPRLPHIVRLSC
SHAIHAECLRMWLSKGRAVCCICNAPVFSASLLDCNDSVVPSSPSFADNR
PTDSLIVEITDYSPSSPATSDIVQTSQPQSDSFPVQPNSARDDHSSAIV*
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mRNA from alignment at tig00000904_pilon:302396..303445-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10578.t1 ID=Ggra10578.t1|Name=Ggra10578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000904_pilon:302396..303445- (Gracilaria gracilis GNS1m male)
ATGGCTTTGCACCGTACTCACGCCTTCTGGGCGCTGCTCTGGCTCGTCAT
GTTCGCCGTCGCCCTGTCCGTCAACCTCGTGCAGTTCCCGTCCTACGAGC
AGGTGCAATGCGAGCAGAAGAGTGACCTCAGTTCCACCGTTGTCAAGAGA
GAGCCGCCCGACTCGAACCGCCGTAGCATCTGCGTGTGGACCGCAAACGT
CACCGTCACGCAGGACAGCGCCATGTTCGACACCGAAGCCAGGACAAAGC
GCACTCCGTGCGATCAACCGCCCGTCGTGTTTCGCCAGTGTTGGCTTTCT
GAGTCCAATCACACCTTCCTTCCCATTGACATGGACGATGCCAACGAGTA
TGAACAAGCAGCTCGCGTTTTCTCCCGTCTGCGTCTGGCCTTCGTTGTGT
TTGCTGTTTTCTTTGCCTCCTTCTTCTTCTACGTCATTCTTCGCTCCTTC
GATGCACGCCTGTTTAGTTGCTGTCACTCCACTTTTTCTTCCAGAAACGA
TGCTCGTAGCACCGCCGACAATGAGCCCTATGTGCGTCGTCCTTCGTCTA
ACTTCTCCGTTACAACTTCTCGTCATGATATCATTATGCCTTCTTCTACG
CTTCAACACCGCATCACCCTCTTTATCCAACAGCACTCCATGACTGCCGA
CCAGGTCAAACAGATTGCACATGAGCAGTGGACTTGTTGTATTTGTCTTG
AACAAGTGGCAGAAGCTCCGCGGCTGCCTCACATAGTGCGCCTCAGCTGT
TCTCATGCCATACACGCCGAGTGTCTCCGAATGTGGCTCTCTAAAGGACG
CGCTGTCTGTTGCATCTGCAACGCTCCAGTGTTCTCTGCTTCTCTATTAG
ATTGCAATGACTCTGTTGTACCAAGTTCGCCGTCCTTCGCTGACAACCGT
CCAACGGATTCTCTAATAGTTGAAATAACCGACTACTCCCCATCATCACC
TGCAACCTCTGATATAGTGCAAACCTCTCAACCACAATCCGATTCATTCC
CTGTTCAACCCAACTCTGCACGAGATGATCACTCATCTGCCATTGTTTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:302396..303445-

>Ggra10578.t1 ID=Ggra10578.t1|Name=Ggra10578.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000904_pilon:302396..303445- (Gracilaria gracilis GNS1m male)
ATGGCTTTGCACCGTACTCACGCCTTCTGGGCGCTGCTCTGGCTCGTCAT
GTTCGCCGTCGCCCTGTCCGTCAACCTCGTGCAGTTCCCGTCCTACGAGC
AGGTGCAATGCGAGCAGAAGAGTGACCTCAGTTCCACCGTTGTCAAGAGA
GAGCCGCCCGACTCGAACCGCCGTAGCATCTGCGTGTGGACCGCAAACGT
CACCGTCACGCAGGACAGCGCCATGTTCGACACCGAAGCCAGGACAAAGC
GCACTCCGTGCGATCAACCGCCCGTCGTGTTTCGCCAGTGTTGGCTTTCT
GAGTCCAATCACACCTTCCTTCCCATTGACATGGACGATGCCAACGAGTA
TGAACAAGCAGCTCGCGTTTTCTCCCGTCTGCGTCTGGCCTTCGTTGTGT
TTGCTGTTTTCTTTGCCTCCTTCTTCTTCTACGTCATTCTTCGCTCCTTC
GATGCACGCCTGTTTAGTTGCTGTCACTCCACTTTTTCTTCCAGAAACGA
TGCTCGTAGCACCGCCGACAATGAGCCCTATGTGCGTCGTCCTTCGTCTA
ACTTCTCCGTTACAACTTCTCGTCATGATATCATTATGCCTTCTTCTACG
CTTCAACACCGCATCACCCTCTTTATCCAACAGCACTCCATGACTGCCGA
CCAGGTCAAACAGATTGCACATGAGCAGTGGACTTGTTGTATTTGTCTTG
AACAAGTGGCAGAAGCTCCGCGGCTGCCTCACATAGTGCGCCTCAGCTGT
TCTCATGCCATACACGCCGAGTGTCTCCGAATGTGGCTCTCTAAAGGACG
CGCTGTCTGTTGCATCTGCAACGCTCCAGTGTTCTCTGCTTCTCTATTAG
ATTGCAATGACTCTGTTGTACCAAGTTCGCCGTCCTTCGCTGACAACCGT
CCAACGGATTCTCTAATAGTTGAAATAACCGACTACTCCCCATCATCACC
TGCAACCTCTGATATAGTGCAAACCTCTCAACCACAATCCGATTCATTCC
CTGTTCAACCCAACTCTGCACGAGATGATCACTCATCTGCCATTGTTTGA
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