Ggra10564.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10564.t1
Unique NameGgra10564.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:208394..209905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709240.1
Preferred nameUGP2
PFAMsUDPGP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00963,ko:K02987,ko:K17260,ko:K17491
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,ko03010,ko04138,ko04212,ko04530,ko04922,map00040,map00052,map00500,map00520,map01100,map01130,map03010,map04138,map04212,map04530,map04922
KEGG ModuleM00129,M00177,M00179,M00361,M00362,M00549
GOsGO:0000045,GO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0003983,GO:0005488,GO:0005515,GO:0005536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005984,GO:0005985,GO:0005991,GO:0005992,GO:0006011,GO:0006065,GO:0006073,GO:0006077,GO:0006078,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006970,GO:0006996,GO:0007033,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009250,GO:0009267,GO:0009277,GO:0009311,GO:0009312,GO:0009555,GO:0009605,GO:0009628,GO:0009651,GO:0009986,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010494,GO:0010941,GO:0010942,GO:0015980,GO:0016020,GO:0016036,GO:0016043,GO:0016051,GO:0016053,GO:0016236,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019103,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0030243,GO:0030244,GO:0030246,GO:0030312,GO:0030445,GO:0030587,GO:0031154,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032553,GO:0032557,GO:0032991,GO:0033036,GO:0033037,GO:0033554,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036094,GO:0036211,GO:0036296,GO:0036464,GO:0042221,GO:0042545,GO:0042594,GO:0042802,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046351,GO:0046394,GO:0046398,GO:0046483,GO:0046686,GO:0048029,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051273,GO:0051274,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051748,GO:0052386,GO:0052543,GO:0052545,GO:0055086,GO:0055093,GO:0055114,GO:0061919,GO:0065007,GO:0070085,GO:0070482,GO:0070569,GO:0070727,GO:0070925,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090406,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905037,GO:1990904
Evalue7.54e-235
EggNOG OGsCOG4284@1|root,KOG2638@2759|Eukaryota
EC2.7.7.9
DescriptionUTP:glucose-1-phosphate uridylyltransferase activity
COG categoryG
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03400,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10564Ggra10564Gracilaria gracilis GNS1m malegenetig00000904_pilon 208394..209905 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10564.t1.start1Ggra10564.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 208394..208396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10564.t1.CDS1Ggra10564.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 208394..209905 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10564.t1.exon1Ggra10564.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 208394..209905 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10564.t1.stop1Ggra10564.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 209903..209905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10564.t1Ggra10564.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 208394..209905 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10564.t1 ID=Ggra10564.t1|Name=Ggra10564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MMPNGKGAMNRDSRSLQDFKGVMDKSAASTVAEKLTVMNQMAANELEKMT
DSETTGFVELYGRYMSERSKKAEIKWDLIEQPSENMLQKYDTLPKPATDE
ELASLLSKLAVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQL
NKNHPTANVPLLLMNSFNTDSETAKIIRKYQDTSVTLTTFQQSRYPRIVK
ESLEPMPLTHDHYAHEDWYPPGHGDFFQSIYNSGLVDTLLAQGKEYIFVS
NVDNLGATVDLNILKNVVDREVEYCMELTDKTRADIKGGTIISYDGKVSL
LEVAQVPAKYVEEFKSISKFKVFNTNNIWVSLRAIKRVMQSGEMKLDIIV
NNKEVKGTKVIQLESAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLMLIQ
SNMYNLKSGSLVMNPARQFTTTPVIKLGKEFKKVAQYLERLGSIPDILEL
DHLTVSGDVYFGANTTLKGTVIVVANPGNTIMIPEGSVLENKVVLGSLHV
IPH*
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spliced messenger RNA

>Ggra10564.t1 ID=Ggra10564.t1|Name=Ggra10564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000904_pilon:208394..209905+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCAAACGGAAAAGGAGCCATGAATCGCGACTCCAGGTCTCTGCA
GGACTTCAAGGGCGTCATGGACAAGTCCGCCGCCTCCACCGTCGCCGAGA
AGCTCACCGTCATGAACCAGATGGCCGCCAATGAGCTCGAGAAGATGACC
GATTCTGAGACCACCGGCTTCGTCGAGTTGTACGGCCGCTACATGAGCGA
ACGTTCCAAAAAGGCCGAAATCAAGTGGGATCTCATCGAACAGCCCAGTG
AAAACATGCTGCAAAAGTACGATACCTTGCCAAAGCCGGCCACCGACGAA
GAACTCGCTTCGCTCCTTTCCAAGCTGGCTGTGCTCAAGCTCAACGGCGG
TCTTGGTACCTCCATGGGCTGCAAAGGACCCAAGAGCGTCATCGAAGTGC
GTGATGACACCACCTTCTTGGACCTCATTGTTCAGCAGATTGGTCAGCTC
AACAAGAACCATCCCACGGCCAACGTCCCCCTGCTTCTCATGAACTCTTT
CAACACCGACTCTGAGACCGCAAAGATCATTCGCAAGTACCAGGATACCA
GTGTTACCCTCACCACCTTCCAGCAATCTCGTTACCCCAGGATCGTCAAG
GAGTCTCTCGAACCGATGCCGCTCACACACGACCACTATGCCCATGAGGA
CTGGTACCCTCCAGGTCACGGAGATTTCTTCCAATCTATTTACAACTCGG
GATTGGTTGATACCCTTCTTGCGCAGGGTAAGGAGTACATCTTTGTCTCA
AACGTTGACAATCTTGGCGCCACTGTCGATCTCAACATTCTCAAGAATGT
CGTTGACCGCGAAGTCGAGTACTGCATGGAGCTCACCGACAAGACACGTG
CCGACATCAAGGGTGGTACCATTATTTCATACGACGGAAAGGTGTCTCTG
CTCGAGGTCGCTCAGGTCCCTGCCAAGTACGTTGAAGAGTTCAAGTCTAT
TTCCAAGTTTAAGGTGTTCAACACCAATAACATTTGGGTATCGTTACGAG
CAATCAAGCGCGTCATGCAATCCGGCGAGATGAAGCTTGATATCATTGTG
AACAACAAGGAAGTCAAGGGTACCAAGGTCATCCAGCTCGAAAGCGCTAT
TGGAGCAGCCATTGGCTACTTCAACAATGCGTGCGGTGTCAACGTTCCTC
GTTCCCGTTTCCTTCCTGTCAAGTCAACCTCCGATCTCATGCTCATTCAG
AGCAACATGTACAACCTTAAATCTGGCTCTCTGGTTATGAACCCTGCCCG
CCAATTTACTACAACTCCAGTGATTAAGCTTGGAAAGGAGTTTAAGAAGG
TCGCTCAATATCTTGAACGTCTGGGTAGCATCCCTGACATTTTGGAGCTT
GACCATCTCACTGTCTCAGGTGATGTCTACTTTGGGGCTAACACTACTCT
GAAAGGAACCGTTATCGTGGTAGCAAACCCTGGGAACACCATCATGATTC
CAGAAGGCTCAGTTCTCGAGAACAAGGTCGTTCTTGGTTCTCTCCATGTG
ATTCCGCATTAA
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protein sequence of Ggra10564.t1

>Ggra10564.t1 ID=Ggra10564.t1|Name=Ggra10564.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MMPNGKGAMNRDSRSLQDFKGVMDKSAASTVAEKLTVMNQMAANELEKMT
DSETTGFVELYGRYMSERSKKAEIKWDLIEQPSENMLQKYDTLPKPATDE
ELASLLSKLAVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQL
NKNHPTANVPLLLMNSFNTDSETAKIIRKYQDTSVTLTTFQQSRYPRIVK
ESLEPMPLTHDHYAHEDWYPPGHGDFFQSIYNSGLVDTLLAQGKEYIFVS
NVDNLGATVDLNILKNVVDREVEYCMELTDKTRADIKGGTIISYDGKVSL
LEVAQVPAKYVEEFKSISKFKVFNTNNIWVSLRAIKRVMQSGEMKLDIIV
NNKEVKGTKVIQLESAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLMLIQ
SNMYNLKSGSLVMNPARQFTTTPVIKLGKEFKKVAQYLERLGSIPDILEL
DHLTVSGDVYFGANTTLKGTVIVVANPGNTIMIPEGSVLENKVVLGSLHV
IPH*
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mRNA from alignment at tig00000904_pilon:208394..209905+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10564.t1 ID=Ggra10564.t1|Name=Ggra10564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000904_pilon:208394..209905+ (Gracilaria gracilis GNS1m male)
ATGATGCCAAACGGAAAAGGAGCCATGAATCGCGACTCCAGGTCTCTGCA
GGACTTCAAGGGCGTCATGGACAAGTCCGCCGCCTCCACCGTCGCCGAGA
AGCTCACCGTCATGAACCAGATGGCCGCCAATGAGCTCGAGAAGATGACC
GATTCTGAGACCACCGGCTTCGTCGAGTTGTACGGCCGCTACATGAGCGA
ACGTTCCAAAAAGGCCGAAATCAAGTGGGATCTCATCGAACAGCCCAGTG
AAAACATGCTGCAAAAGTACGATACCTTGCCAAAGCCGGCCACCGACGAA
GAACTCGCTTCGCTCCTTTCCAAGCTGGCTGTGCTCAAGCTCAACGGCGG
TCTTGGTACCTCCATGGGCTGCAAAGGACCCAAGAGCGTCATCGAAGTGC
GTGATGACACCACCTTCTTGGACCTCATTGTTCAGCAGATTGGTCAGCTC
AACAAGAACCATCCCACGGCCAACGTCCCCCTGCTTCTCATGAACTCTTT
CAACACCGACTCTGAGACCGCAAAGATCATTCGCAAGTACCAGGATACCA
GTGTTACCCTCACCACCTTCCAGCAATCTCGTTACCCCAGGATCGTCAAG
GAGTCTCTCGAACCGATGCCGCTCACACACGACCACTATGCCCATGAGGA
CTGGTACCCTCCAGGTCACGGAGATTTCTTCCAATCTATTTACAACTCGG
GATTGGTTGATACCCTTCTTGCGCAGGGTAAGGAGTACATCTTTGTCTCA
AACGTTGACAATCTTGGCGCCACTGTCGATCTCAACATTCTCAAGAATGT
CGTTGACCGCGAAGTCGAGTACTGCATGGAGCTCACCGACAAGACACGTG
CCGACATCAAGGGTGGTACCATTATTTCATACGACGGAAAGGTGTCTCTG
CTCGAGGTCGCTCAGGTCCCTGCCAAGTACGTTGAAGAGTTCAAGTCTAT
TTCCAAGTTTAAGGTGTTCAACACCAATAACATTTGGGTATCGTTACGAG
CAATCAAGCGCGTCATGCAATCCGGCGAGATGAAGCTTGATATCATTGTG
AACAACAAGGAAGTCAAGGGTACCAAGGTCATCCAGCTCGAAAGCGCTAT
TGGAGCAGCCATTGGCTACTTCAACAATGCGTGCGGTGTCAACGTTCCTC
GTTCCCGTTTCCTTCCTGTCAAGTCAACCTCCGATCTCATGCTCATTCAG
AGCAACATGTACAACCTTAAATCTGGCTCTCTGGTTATGAACCCTGCCCG
CCAATTTACTACAACTCCAGTGATTAAGCTTGGAAAGGAGTTTAAGAAGG
TCGCTCAATATCTTGAACGTCTGGGTAGCATCCCTGACATTTTGGAGCTT
GACCATCTCACTGTCTCAGGTGATGTCTACTTTGGGGCTAACACTACTCT
GAAAGGAACCGTTATCGTGGTAGCAAACCCTGGGAACACCATCATGATTC
CAGAAGGCTCAGTTCTCGAGAACAAGGTCGTTCTTGGTTCTCTCCATGTG
ATTCCGCATTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:208394..209905+

>Ggra10564.t1 ID=Ggra10564.t1|Name=Ggra10564.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000904_pilon:208394..209905+ (Gracilaria gracilis GNS1m male)
ATGATGCCAAACGGAAAAGGAGCCATGAATCGCGACTCCAGGTCTCTGCA
GGACTTCAAGGGCGTCATGGACAAGTCCGCCGCCTCCACCGTCGCCGAGA
AGCTCACCGTCATGAACCAGATGGCCGCCAATGAGCTCGAGAAGATGACC
GATTCTGAGACCACCGGCTTCGTCGAGTTGTACGGCCGCTACATGAGCGA
ACGTTCCAAAAAGGCCGAAATCAAGTGGGATCTCATCGAACAGCCCAGTG
AAAACATGCTGCAAAAGTACGATACCTTGCCAAAGCCGGCCACCGACGAA
GAACTCGCTTCGCTCCTTTCCAAGCTGGCTGTGCTCAAGCTCAACGGCGG
TCTTGGTACCTCCATGGGCTGCAAAGGACCCAAGAGCGTCATCGAAGTGC
GTGATGACACCACCTTCTTGGACCTCATTGTTCAGCAGATTGGTCAGCTC
AACAAGAACCATCCCACGGCCAACGTCCCCCTGCTTCTCATGAACTCTTT
CAACACCGACTCTGAGACCGCAAAGATCATTCGCAAGTACCAGGATACCA
GTGTTACCCTCACCACCTTCCAGCAATCTCGTTACCCCAGGATCGTCAAG
GAGTCTCTCGAACCGATGCCGCTCACACACGACCACTATGCCCATGAGGA
CTGGTACCCTCCAGGTCACGGAGATTTCTTCCAATCTATTTACAACTCGG
GATTGGTTGATACCCTTCTTGCGCAGGGTAAGGAGTACATCTTTGTCTCA
AACGTTGACAATCTTGGCGCCACTGTCGATCTCAACATTCTCAAGAATGT
CGTTGACCGCGAAGTCGAGTACTGCATGGAGCTCACCGACAAGACACGTG
CCGACATCAAGGGTGGTACCATTATTTCATACGACGGAAAGGTGTCTCTG
CTCGAGGTCGCTCAGGTCCCTGCCAAGTACGTTGAAGAGTTCAAGTCTAT
TTCCAAGTTTAAGGTGTTCAACACCAATAACATTTGGGTATCGTTACGAG
CAATCAAGCGCGTCATGCAATCCGGCGAGATGAAGCTTGATATCATTGTG
AACAACAAGGAAGTCAAGGGTACCAAGGTCATCCAGCTCGAAAGCGCTAT
TGGAGCAGCCATTGGCTACTTCAACAATGCGTGCGGTGTCAACGTTCCTC
GTTCCCGTTTCCTTCCTGTCAAGTCAACCTCCGATCTCATGCTCATTCAG
AGCAACATGTACAACCTTAAATCTGGCTCTCTGGTTATGAACCCTGCCCG
CCAATTTACTACAACTCCAGTGATTAAGCTTGGAAAGGAGTTTAAGAAGG
TCGCTCAATATCTTGAACGTCTGGGTAGCATCCCTGACATTTTGGAGCTT
GACCATCTCACTGTCTCAGGTGATGTCTACTTTGGGGCTAACACTACTCT
GAAAGGAACCGTTATCGTGGTAGCAAACCCTGGGAACACCATCATGATTC
CAGAAGGCTCAGTTCTCGAGAACAAGGTCGTTCTTGGTTCTCTCCATGTG
ATTCCGCATTAA
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