Ggra10577.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10577.t1
Unique Name	Ggra10577.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:299830..301860 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI35387
PFAMs	PhoD,Pkinase,SAM_2,zf-B_box
Max annot lvl	4776\|Peronosporales
Evalue	9.87e-50
EggNOG OGs	KOG0581@1\|root,KOG0581@2759\|Eukaryota,3QB9K@4776\|Peronosporales
Description	MAP kinase kinase activity
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10577	Ggra10577	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 299830..301860 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10577.t1.stop1	Ggra10577.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 299830..299832 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10577.t1.CDS1	Ggra10577.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 299830..301860 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10577.t1.exon1	Ggra10577.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 299830..301860 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10577.t1.start1	Ggra10577.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 301858..301860 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10577.t1	Ggra10577.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 299830..301860 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:299830..301860-
coding sequence from alignment at tig00000904_pilon:299830..301860-

mRNA sequence

>Ggra10577.t1 ID=Ggra10577.t1|Name=Ggra10577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp
MGLFSRKASSRNIGQSERSNHGTSLPRKNSSKHKSKLNDLFSDGKSNNEM
PGTPVTDATCFDEVISAPTVALDDFVQESKASSGTEASAPVSPNFDRDRS
CNLSDRRDRDRGNSATSNQDRTMQMSDLARRNTIKRSVSRKIARSESRRQ
LLNIGDSSLNDDRVTNAAMNRSPSGLLSKRASVNRGLDRSSSKRVIVNEK
KFSVPMSRSSSFSARVRALDTKDQTSSEVKVDDTLSAMGVMALTDDVDEE
LELSHTSLRNFSRMEDPKDNKVGDVVAGHQDVGIPGDTSRQLSENQNHKS
VKARKRPPPLLAKEEVKSVTDSTTDWPSGGFFGSDGGFVTGGFHITAEGM
LDKPLSVTRQDSDEDEDGGVPQSHRVIVIAKGLKELRTGPTIGAGAAGRV
YIAEHIPSKTRMAMKVVNVYDKHRRNQLLKELETLSTHISRYLVRFYGAF
YDGSGAVHIALEYMDHGCLATFVQRVGPIPERVVQMIAHDCVKGLRFLHR
HHVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYM
SPERLNGSQYTYASDIWALGVSIMECLLGKYPFDRPQNYFDYIEATMTIN
VLSGFKRECAKFSPEVRDFVERCTYTDPKERATVAELMEHPWLKGTTRDT
ELFGSWLDECRIISMRPTRSQTAGRK*

spliced messenger RNA

>Ggra10577.t1 ID=Ggra10577.t1|Name=Ggra10577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000904_pilon:299830..301860- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTGTTCAGTCGTAAGGCTTCGTCGAGAAACATTGGGCAGTCAGA
AAGAAGTAATCATGGTACAAGTTTACCGCGAAAGAATTCCTCGAAGCACA
AGTCGAAACTGAATGATTTGTTTTCTGATGGTAAATCGAACAATGAAATG
CCTGGAACGCCAGTGACTGATGCTACTTGTTTTGATGAAGTGATTTCAGC
GCCAACTGTTGCGTTAGATGACTTTGTTCAAGAATCAAAAGCATCGTCAG
GTACGGAAGCTTCTGCGCCTGTGAGTCCAAATTTTGATCGAGACAGAAGT
TGCAACCTTTCTGATCGAAGGGATAGAGACCGTGGAAATTCAGCTACTTC
TAACCAAGACCGAACGATGCAAATGTCAGACCTGGCAAGGCGTAACACGA
TCAAACGTTCTGTATCGAGAAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTACTGAATATAGGGGACAGCAGTCTGAACGACGACCGTGTTACTAATGC
CGCGATGAATCGTTCGCCATCGGGCTTGCTATCAAAACGCGCTTCTGTGA
ACCGCGGTCTGGACCGCTCAAGCTCTAAAAGAGTCATTGTGAACGAGAAG
AAGTTTTCTGTACCAATGTCAAGATCAAGTTCATTCTCTGCACGCGTTCG
AGCCCTGGATACAAAGGACCAAACTTCTTCAGAAGTGAAAGTAGACGACA
CTTTGAGTGCAATGGGTGTTATGGCGCTGACAGATGATGTTGACGAGGAA
CTTGAACTCAGTCATACCAGTTTGCGTAACTTTTCGAGAATGGAGGACCC
GAAGGACAACAAGGTTGGGGATGTTGTTGCAGGTCATCAGGATGTCGGTA
TCCCCGGCGATACTTCTAGACAACTTTCCGAAAACCAAAACCACAAATCT
GTGAAGGCCAGGAAGCGACCTCCCCCTCTCCTGGCAAAAGAAGAAGTGAA
ATCAGTAACGGATTCCACAACCGATTGGCCGAGCGGAGGGTTCTTCGGAA
GTGATGGAGGCTTCGTCACTGGTGGCTTCCATATTACCGCCGAGGGAATG
CTTGACAAACCGCTTTCTGTGACACGTCAGGATTCAGACGAGGACGAAGA
TGGTGGAGTTCCTCAGTCGCATCGCGTGATTGTTATAGCAAAGGGCCTGA
AAGAATTGCGAACTGGTCCTACTATAGGCGCAGGCGCCGCCGGAAGGGTG
TACATCGCAGAGCATATACCTTCCAAAACCAGAATGGCAATGAAAGTAGT
GAATGTGTACGACAAGCATCGCCGAAACCAACTGTTGAAGGAACTTGAAA
CTCTCTCTACTCACATCAGTCGATATCTTGTTAGATTTTATGGTGCGTTC
TATGACGGTTCGGGGGCTGTACATATTGCTCTCGAGTACATGGATCATGG
TTGCCTAGCCACATTTGTTCAGCGTGTTGGACCAATTCCTGAAAGAGTTG
TGCAGATGATAGCTCACGACTGCGTGAAAGGTCTCCGGTTCTTGCATAGA
CATCATGTGCTTCACCGTGACTTTAAGACAGCCAATATACTTTTGTCCCG
ACGACTGTGCAGGGCGAAGCTCAGCGACTTTGGCCTGGCTCGAGATTTGA
ATCCAGGTGTTTCAAAGGTTGATACCTTTGTTGGAACTGTGGCGTACATG
TCACCGGAACGACTAAATGGCAGCCAGTATACGTATGCTTCGGATATTTG
GGCCCTTGGAGTGTCTATCATGGAATGCCTCTTGGGCAAGTACCCTTTTG
ATCGTCCTCAAAACTACTTTGATTACATTGAGGCCACGATGACAATCAAC
GTACTAAGTGGTTTTAAGAGGGAGTGTGCTAAGTTTTCTCCAGAAGTCCG
AGACTTCGTCGAAAGATGTACCTACACTGACCCGAAAGAAAGAGCCACAG
TAGCAGAGCTTATGGAACACCCATGGTTGAAGGGAACAACTAGAGACACC
GAACTATTTGGTTCGTGGTTGGATGAGTGTCGAATAATATCGATGCGCCC
TACACGTTCGCAGACGGCTGGAAGAAAGTAA

protein sequence of Ggra10577.t1

>Ggra10577.t1 ID=Ggra10577.t1|Name=Ggra10577.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=677bp
MGLFSRKASSRNIGQSERSNHGTSLPRKNSSKHKSKLNDLFSDGKSNNEM
PGTPVTDATCFDEVISAPTVALDDFVQESKASSGTEASAPVSPNFDRDRS
CNLSDRRDRDRGNSATSNQDRTMQMSDLARRNTIKRSVSRKIARSESRRQ
LLNIGDSSLNDDRVTNAAMNRSPSGLLSKRASVNRGLDRSSSKRVIVNEK
KFSVPMSRSSSFSARVRALDTKDQTSSEVKVDDTLSAMGVMALTDDVDEE
LELSHTSLRNFSRMEDPKDNKVGDVVAGHQDVGIPGDTSRQLSENQNHKS
VKARKRPPPLLAKEEVKSVTDSTTDWPSGGFFGSDGGFVTGGFHITAEGM
LDKPLSVTRQDSDEDEDGGVPQSHRVIVIAKGLKELRTGPTIGAGAAGRV
YIAEHIPSKTRMAMKVVNVYDKHRRNQLLKELETLSTHISRYLVRFYGAF
YDGSGAVHIALEYMDHGCLATFVQRVGPIPERVVQMIAHDCVKGLRFLHR
HHVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYM
SPERLNGSQYTYASDIWALGVSIMECLLGKYPFDRPQNYFDYIEATMTIN
VLSGFKRECAKFSPEVRDFVERCTYTDPKERATVAELMEHPWLKGTTRDT
ELFGSWLDECRIISMRPTRSQTAGRK*

mRNA from alignment at tig00000904_pilon:299830..301860-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10577.t1 ID=Ggra10577.t1|Name=Ggra10577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000904_pilon:299830..301860- (Gracilaria gracilis GNS1m male)
ATGGGTCTGTTCAGTCGTAAGGCTTCGTCGAGAAACATTGGGCAGTCAGA
AAGAAGTAATCATGGTACAAGTTTACCGCGAAAGAATTCCTCGAAGCACA
AGTCGAAACTGAATGATTTGTTTTCTGATGGTAAATCGAACAATGAAATG
CCTGGAACGCCAGTGACTGATGCTACTTGTTTTGATGAAGTGATTTCAGC
GCCAACTGTTGCGTTAGATGACTTTGTTCAAGAATCAAAAGCATCGTCAG
GTACGGAAGCTTCTGCGCCTGTGAGTCCAAATTTTGATCGAGACAGAAGT
TGCAACCTTTCTGATCGAAGGGATAGAGACCGTGGAAATTCAGCTACTTC
TAACCAAGACCGAACGATGCAAATGTCAGACCTGGCAAGGCGTAACACGA
TCAAACGTTCTGTATCGAGAAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTACTGAATATAGGGGACAGCAGTCTGAACGACGACCGTGTTACTAATGC
CGCGATGAATCGTTCGCCATCGGGCTTGCTATCAAAACGCGCTTCTGTGA
ACCGCGGTCTGGACCGCTCAAGCTCTAAAAGAGTCATTGTGAACGAGAAG
AAGTTTTCTGTACCAATGTCAAGATCAAGTTCATTCTCTGCACGCGTTCG
AGCCCTGGATACAAAGGACCAAACTTCTTCAGAAGTGAAAGTAGACGACA
CTTTGAGTGCAATGGGTGTTATGGCGCTGACAGATGATGTTGACGAGGAA
CTTGAACTCAGTCATACCAGTTTGCGTAACTTTTCGAGAATGGAGGACCC
GAAGGACAACAAGGTTGGGGATGTTGTTGCAGGTCATCAGGATGTCGGTA
TCCCCGGCGATACTTCTAGACAACTTTCCGAAAACCAAAACCACAAATCT
GTGAAGGCCAGGAAGCGACCTCCCCCTCTCCTGGCAAAAGAAGAAGTGAA
ATCAGTAACGGATTCCACAACCGATTGGCCGAGCGGAGGGTTCTTCGGAA
GTGATGGAGGCTTCGTCACTGGTGGCTTCCATATTACCGCCGAGGGAATG
CTTGACAAACCGCTTTCTGTGACACGTCAGGATTCAGACGAGGACGAAGA
TGGTGGAGTTCCTCAGTCGCATCGCGTGATTGTTATAGCAAAGGGCCTGA
AAGAATTGCGAACTGGTCCTACTATAGGCGCAGGCGCCGCCGGAAGGGTG
TACATCGCAGAGCATATACCTTCCAAAACCAGAATGGCAATGAAAGTAGT
GAATGTGTACGACAAGCATCGCCGAAACCAACTGTTGAAGGAACTTGAAA
CTCTCTCTACTCACATCAGTCGATATCTTGTTAGATTTTATGGTGCGTTC
TATGACGGTTCGGGGGCTGTACATATTGCTCTCGAGTACATGGATCATGG
TTGCCTAGCCACATTTGTTCAGCGTGTTGGACCAATTCCTGAAAGAGTTG
TGCAGATGATAGCTCACGACTGCGTGAAAGGTCTCCGGTTCTTGCATAGA
CATCATGTGCTTCACCGTGACTTTAAGACAGCCAATATACTTTTGTCCCG
ACGACTGTGCAGGGCGAAGCTCAGCGACTTTGGCCTGGCTCGAGATTTGA
ATCCAGGTGTTTCAAAGGTTGATACCTTTGTTGGAACTGTGGCGTACATG
TCACCGGAACGACTAAATGGCAGCCAGTATACGTATGCTTCGGATATTTG
GGCCCTTGGAGTGTCTATCATGGAATGCCTCTTGGGCAAGTACCCTTTTG
ATCGTCCTCAAAACTACTTTGATTACATTGAGGCCACGATGACAATCAAC
GTACTAAGTGGTTTTAAGAGGGAGTGTGCTAAGTTTTCTCCAGAAGTCCG
AGACTTCGTCGAAAGATGTACCTACACTGACCCGAAAGAAAGAGCCACAG
TAGCAGAGCTTATGGAACACCCATGGTTGAAGGGAACAACTAGAGACACC
GAACTATTTGGTTCGTGGTTGGATGAGTGTCGAATAATATCGATGCGCCC
TACACGTTCGCAGACGGCTGGAAGAAAGTAA

Coding sequence (CDS) from alignment at tig00000904_pilon:299830..301860-

>Ggra10577.t1 ID=Ggra10577.t1|Name=Ggra10577.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000904_pilon:299830..301860- (Gracilaria gracilis GNS1m male)
ATGGGTCTGTTCAGTCGTAAGGCTTCGTCGAGAAACATTGGGCAGTCAGA
AAGAAGTAATCATGGTACAAGTTTACCGCGAAAGAATTCCTCGAAGCACA
AGTCGAAACTGAATGATTTGTTTTCTGATGGTAAATCGAACAATGAAATG
CCTGGAACGCCAGTGACTGATGCTACTTGTTTTGATGAAGTGATTTCAGC
GCCAACTGTTGCGTTAGATGACTTTGTTCAAGAATCAAAAGCATCGTCAG
GTACGGAAGCTTCTGCGCCTGTGAGTCCAAATTTTGATCGAGACAGAAGT
TGCAACCTTTCTGATCGAAGGGATAGAGACCGTGGAAATTCAGCTACTTC
TAACCAAGACCGAACGATGCAAATGTCAGACCTGGCAAGGCGTAACACGA
TCAAACGTTCTGTATCGAGAAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTACTGAATATAGGGGACAGCAGTCTGAACGACGACCGTGTTACTAATGC
CGCGATGAATCGTTCGCCATCGGGCTTGCTATCAAAACGCGCTTCTGTGA
ACCGCGGTCTGGACCGCTCAAGCTCTAAAAGAGTCATTGTGAACGAGAAG
AAGTTTTCTGTACCAATGTCAAGATCAAGTTCATTCTCTGCACGCGTTCG
AGCCCTGGATACAAAGGACCAAACTTCTTCAGAAGTGAAAGTAGACGACA
CTTTGAGTGCAATGGGTGTTATGGCGCTGACAGATGATGTTGACGAGGAA
CTTGAACTCAGTCATACCAGTTTGCGTAACTTTTCGAGAATGGAGGACCC
GAAGGACAACAAGGTTGGGGATGTTGTTGCAGGTCATCAGGATGTCGGTA
TCCCCGGCGATACTTCTAGACAACTTTCCGAAAACCAAAACCACAAATCT
GTGAAGGCCAGGAAGCGACCTCCCCCTCTCCTGGCAAAAGAAGAAGTGAA
ATCAGTAACGGATTCCACAACCGATTGGCCGAGCGGAGGGTTCTTCGGAA
GTGATGGAGGCTTCGTCACTGGTGGCTTCCATATTACCGCCGAGGGAATG
CTTGACAAACCGCTTTCTGTGACACGTCAGGATTCAGACGAGGACGAAGA
TGGTGGAGTTCCTCAGTCGCATCGCGTGATTGTTATAGCAAAGGGCCTGA
AAGAATTGCGAACTGGTCCTACTATAGGCGCAGGCGCCGCCGGAAGGGTG
TACATCGCAGAGCATATACCTTCCAAAACCAGAATGGCAATGAAAGTAGT
GAATGTGTACGACAAGCATCGCCGAAACCAACTGTTGAAGGAACTTGAAA
CTCTCTCTACTCACATCAGTCGATATCTTGTTAGATTTTATGGTGCGTTC
TATGACGGTTCGGGGGCTGTACATATTGCTCTCGAGTACATGGATCATGG
TTGCCTAGCCACATTTGTTCAGCGTGTTGGACCAATTCCTGAAAGAGTTG
TGCAGATGATAGCTCACGACTGCGTGAAAGGTCTCCGGTTCTTGCATAGA
CATCATGTGCTTCACCGTGACTTTAAGACAGCCAATATACTTTTGTCCCG
ACGACTGTGCAGGGCGAAGCTCAGCGACTTTGGCCTGGCTCGAGATTTGA
ATCCAGGTGTTTCAAAGGTTGATACCTTTGTTGGAACTGTGGCGTACATG
TCACCGGAACGACTAAATGGCAGCCAGTATACGTATGCTTCGGATATTTG
GGCCCTTGGAGTGTCTATCATGGAATGCCTCTTGGGCAAGTACCCTTTTG
ATCGTCCTCAAAACTACTTTGATTACATTGAGGCCACGATGACAATCAAC
GTACTAAGTGGTTTTAAGAGGGAGTGTGCTAAGTTTTCTCCAGAAGTCCG
AGACTTCGTCGAAAGATGTACCTACACTGACCCGAAAGAAAGAGCCACAG
TAGCAGAGCTTATGGAACACCCATGGTTGAAGGGAACAACTAGAGACACC
GAACTATTTGGTTCGTGGTTGGATGAGTGTCGAATAATATCGATGCGCCC
TACACGTTCGCAGACGGCTGGAAGAAAGTAA