Ggra10533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10533.t1
Unique NameGgra10533.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:47329..48176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10533Ggra10533Gracilaria gracilis GNS1m malegenetig00000904_pilon 47329..48195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1Ggra10533.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 47329..48176 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1.start1Ggra10533.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 47329..47331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1.CDS1Ggra10533.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 47329..47389 +
Ggra10533.t1.CDS2Ggra10533.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 47605..47632 +
Ggra10533.t1.CDS3Ggra10533.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 47831..47909 +
Ggra10533.t1.CDS4Ggra10533.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000904_pilon 48144..48176 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1.exon1Ggra10533.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 47329..47389 +
Ggra10533.t1.exon2Ggra10533.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 47605..47632 +
Ggra10533.t1.exon3Ggra10533.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 47831..47909 +
Ggra10533.t1.exon4Ggra10533.t1.exon4Gracilaria gracilis GNS1m maleexontig00000904_pilon 48144..48176 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1.intron1Ggra10533.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 47390..47604 +
Ggra10533.t1.intron2Ggra10533.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 47633..47830 +
Ggra10533.t1.intron3Ggra10533.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000904_pilon 47910..48143 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10533.t1.stop1Ggra10533.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 48174..48176 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10533.t1 ID=Ggra10533.t1|Name=Ggra10533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=67bp
LIPLDRRRSKLQWQFEKSSVVNTALFVPIRSLNFVLDHALVPSSMLTCKT
FQIRHKLKQRGCRCLA*
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spliced messenger RNA

>Ggra10533.t1 ID=Ggra10533.t1|Name=Ggra10533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp|location=Sequence derived from alignment at tig00000904_pilon:47329..48176+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGATACCTCTCGATCGTCGTCGCAGCAAACTGCAATGGCAGTTCGAGAA
GAGCTCTGTCGTTAATACAGCTCTCTTCGTTCCCATACGTTCTTTGAACT
TTGTATTGGATCATGCCCTTGTACCATCATCGATGCTAACTTGCAAAACT
TTCCAGATCCGCCACAAGCTTAAACAGAGAGGCTGTCGGTGTTTGGCCTG
A
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protein sequence of Ggra10533.t1

>Ggra10533.t1 ID=Ggra10533.t1|Name=Ggra10533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=67bp
LIPLDRRRSKLQWQFEKSSVVNTALFVPIRSLNFVLDHALVPSSMLTCKT
FQIRHKLKQRGCRCLA*
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mRNA from alignment at tig00000904_pilon:47329..48176+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10533.t1 ID=Ggra10533.t1|Name=Ggra10533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=848bp|location=Sequence derived from alignment at tig00000904_pilon:47329..48176+ (Gracilaria gracilis GNS1m male)
TTGATACCTCTCGATCGTCGTCGCAGCAAACTGCAATGGCAGTTCGAGAA
GAGCTCTGTCGGTAAGTTCTTCGCTTCGTTTCCTCACTAACTACCGTATG
AAGAGCACttcacgccaaaacaaacaacctagtgcccaacattatctcga
cattgcaaCGACAATGAGATGTGGCACTATGCGGACTGATATGATAGGCC
TGACGGAAGTTTCAGCACATTTGTCCTCCAATTCCCTGCTGACATCGTCG
TTCTTTTCTTTCATTTGTGTGAACAGTTAATACAGCTCTCTTCGTTCCCA
TACGGTACGTCTGTCGCCCCTCCTGTTGATCCGAATGATGACCATACAGT
TAATTATTAGATGACGAGCTTTAGTGCGCGTTGAGATACAGTTATTGTAC
TCCTTTGCGTGTGAAGAGGAAAGCTATTGTCTTGACGGCCGTGACCCATG
CCATCCCCATCTATCCCAAACGCACAGCTAACCTATCTTTCTCTGCAAAC
AGTTCTTTGAACTTTGTATTGGATCATGCCCTTGTACCATCATCGATGCT
AACTTGCAAAACTTTCCAGATCCGCCACAAGGTAAGTTCTTTTGTATATC
CGTTGCGGCTGCTGTGGTAAAGGTGAGTGTGATGATCACTCGGCATTTGT
CTTAAGGTGTGCACTCGTGGTTTTCACGTTTGCTTTTTCTCTGCTGAAAC
GTTCAGACTACCTACAAATGAAACCCTGACTCACGAGTCACACATCCCTC
AACGAGCCTCGCTGGTCTATGTCATTTACGATCCTAAGTCTCACAACAAA
GTTCTTATCTATCAGCTTAAACAGAGAGGCTGTCGGTGTTTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:47329..48176+

>Ggra10533.t1 ID=Ggra10533.t1|Name=Ggra10533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=201bp|location=Sequence derived from alignment at tig00000904_pilon:47329..48176+ (Gracilaria gracilis GNS1m male)
TTGATACCTCTCGATCGTCGTCGCAGCAAACTGCAATGGCAGTTCGAGAA
GAGCTCTGTCGTTAATACAGCTCTCTTCGTTCCCATACGTTCTTTGAACT
TTGTATTGGATCATGCCCTTGTACCATCATCGATGCTAACTTGCAAAACT
TTCCAGATCCGCCACAAGCTTAAACAGAGAGGCTGTCGGTGTTTGGCCTG
A
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