Ggra10584.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10584.t1
Unique NameGgra10584.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:318359..319888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog80637.XP_007772270.1
Preferred nameDPH2
PFAMsDiphthamide_syn
Max annot lvl4751|Fungi
KEGG koko:K17866
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
Evalue2.57e-64
EggNOG OGsCOG1736@1|root,KOG2648@2759|Eukaryota,38FXZ@33154|Opisthokonta,3NUDH@4751|Fungi,3UY4R@5204|Basidiomycota,224BM@155619|Agaricomycetes
DescriptionRequired for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10584Ggra10584Gracilaria gracilis GNS1m malegenetig00000904_pilon 318359..319888 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10584.t1.stop1Ggra10584.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 318359..318361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10584.t1.CDS1Ggra10584.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 318359..319888 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10584.t1.exon1Ggra10584.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 318359..319888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10584.t1.start1Ggra10584.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 319886..319888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10584.t1Ggra10584.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 318359..319888 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MPGVSDDVFQSIDCWLPVSPGPSELSAKRWEEVIDGYHVKRTAELIRNYA
NGKACHVALQFPDHMLHVGPFICEALRLSTNACDGDHEDSPTINFFLLGD
TSYGECCVDEVAAQHLFCDLVVHYGNACLSPTRTLPVLYVFPKTTFEYPE
DACTKVRESLLELAHSADTQKVIILYDLDLESCFANNRFQAGEHQVTFAS
LEVEIQVAALQIRNADTVRAPGTNRTSSDGDETVVGPHVIHFGAVPADKV
AFVWYTRCVEDGEYPPLLRNAAIQLCSGTSNSSRKFFSVSLVGERGDSVQ
LIEPSRILRKRFASIGKIQAAERIGIIPGTLGVSGNTDIIERCKVLVKLA
GKRSYVILVGKPNPVKLANFPEIDVFVLVACPQNGLIDHKEYLRPIVTPF
ELEAAILRDGDIFSTTYTLDFQELLKHKLCNAVDSEEENQLIARNSDWSL
AVSGDGSGADYLKKRHWQGLNYGGGGSDDETRIEQLPTHIESGESGIARG
YSRERNTNP*
back to top

spliced messenger RNA

>Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG
back to top

protein sequence of Ggra10584.t1

>Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPGVSDDVFQSIDCWLPVSPGPSELSAKRWEEVIDGYHVKRTAELIRNYA
NGKACHVALQFPDHMLHVGPFICEALRLSTNACDGDHEDSPTINFFLLGD
TSYGECCVDEVAAQHLFCDLVVHYGNACLSPTRTLPVLYVFPKTTFEYPE
DACTKVRESLLELAHSADTQKVIILYDLDLESCFANNRFQAGEHQVTFAS
LEVEIQVAALQIRNADTVRAPGTNRTSSDGDETVVGPHVIHFGAVPADKV
AFVWYTRCVEDGEYPPLLRNAAIQLCSGTSNSSRKFFSVSLVGERGDSVQ
LIEPSRILRKRFASIGKIQAAERIGIIPGTLGVSGNTDIIERCKVLVKLA
GKRSYVILVGKPNPVKLANFPEIDVFVLVACPQNGLIDHKEYLRPIVTPF
ELEAAILRDGDIFSTTYTLDFQELLKHKLCNAVDSEEENQLIARNSDWSL
AVSGDGSGADYLKKRHWQGLNYGGGGSDDETRIEQLPTHIESGESGIARG
YSRERNTNP*
back to top

mRNA from alignment at tig00000904_pilon:318359..319888-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:318359..319888-

>Ggra10584.t1 ID=Ggra10584.t1|Name=Ggra10584.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000904_pilon:318359..319888- (Gracilaria gracilis GNS1m male)
ATGCCTGGAGTTTCGGACGATGTTTTTCAATCCATAGACTGTTGGTTACC
TGTTTCTCCCGGGCCAAGCGAATTAAGTGCGAAGAGATGGGAGGAAGTTA
TTGACGGCTATCACGTGAAGAGGACTGCAGAATTGATTAGGAACTATGCA
AACGGAAAGGCCTGCCATGTTGCGCTGCAGTTCCCTGATCACATGTTGCA
TGTAGGACCGTTCATTTGTGAAGCCCTACGTTTGTCAACCAATGCATGTG
ATGGAGACCACGAAGACAGTCCGACCATTAATTTCTTCCTGCTTGGAGAT
ACATCCTATGGGGAATGCTGCGTAGACGAAGTTGCAGCGCAACACCTTTT
CTGTGACCTTGTTGTACACTATGGAAACGCCTGTCTATCTCCAACCAGAA
CTTTGCCGGTATTGTACGTGTTTCCCAAGACAACCTTCGAGTATCCCGAA
GATGCCTGCACCAAGGTTAGGGAAAGCCTTTTAGAGCTTGCTCACAGCGC
AGACACCCAGAAAGTTATTATTCTCTACGATCTGGATCTCGAAAGTTGTT
TTGCGAACAACAGATTTCAAGCTGGGGAGCATCAAGTTACATTTGCAAGT
CTCGAAGTTGAAATTCAAGTCGCTGCGCTTCAAATACGTAATGCTGATAC
TGTCAGGGCACCTGGTACCAACAGAACAAGTAGCGACGGTGACGAGACAG
TAGTTGGGCCTCATGTGATCCACTTTGGGGCGGTACCAGCGGACAAAGTA
GCGTTCGTCTGGTACACTCGATGCGTGGAGGACGGTGAATATCCGCCATT
ACTTCGAAATGCAGCCATCCAATTGTGCTCGGGAACGTCTAACTCGTCAC
GCAAGTTCTTCTCTGTATCTCTTGTTGGGGAACGAGGTGATTCAGTCCAA
CTGATTGAACCTTCGAGAATCTTGAGGAAGCGCTTTGCTTCCATAGGGAA
AATACAAGCAGCAGAGAGAATTGGAATCATCCCAGGAACATTAGGTGTTT
CCGGGAACACTGACATAATTGAAAGATGCAAAGTGCTTGTTAAACTTGCT
GGAAAACGCTCTTATGTGATCCTTGTGGGGAAGCCGAACCCCGTTAAGCT
AGCGAACTTCCCTGAAATCGACGTTTTCGTACTCGTGGCATGTCCACAAA
ATGGGTTAATAGACCATAAAGAATATTTGCGACCTATCGTAACCCCGTTT
GAACTAGAGGCAGCCATTCTCAGGGATGGGGATATATTCAGTACCACATA
TACTTTGGACTTCCAGGAACTATTGAAGCACAAGCTTTGCAACGCTGTGG
ATTCCGAAGAAGAAAACCAGTTAATCGCCAGAAACAGCGACTGGTCGCTC
GCAGTAAGTGGTGACGGTAGCGGTGCAGATTACCTGAAGAAGAGGCATTG
GCAAGGTCTGAATTATGGAGGCGGTGGCTCTGATGATGAAACTAGAATAG
AACAGCTTCCTACTCATATCGAAAGTGGGGAATCCGGAATCGCTAGAGGC
TACAGCAGGGAGCGGAATACGAATCCTTAG
back to top