Ggra10566.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10566.t1
Unique NameGgra10566.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:214678..215088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra005690.1-P
PFAMsMito_carr
Max annot lvl35493|Streptophyta
KEGG koko:K15100
KEGG TC2.A.29.7
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015141,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
Evalue4.21e-09
EggNOG OGsKOG0756@1|root,KOG0756@2759|Eukaryota,37JDR@33090|Viridiplantae,3GCD8@35493|Streptophyta,3HUH2@3699|Brassicales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10566Ggra10566Gracilaria gracilis GNS1m malegenetig00000904_pilon 214678..215088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1Ggra10566.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 214678..215088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1.stop1Ggra10566.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 214678..214680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1.CDS1Ggra10566.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 214678..214800 -
Ggra10566.t1.CDS2Ggra10566.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 214894..215088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1.exon1Ggra10566.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 214678..214800 -
Ggra10566.t1.exon2Ggra10566.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 214894..215088 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1.intron1Ggra10566.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 214801..214893 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10566.t1.start1Ggra10566.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 215086..215088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=106bp
MGPGGLFSRIAQWLANELIVKGLSNNHAFQRFAVRSSQQVKELSKSAAEA
AKNISESESWVQMRKESEALRNQAKDFASALREEIEEGVRRAGQGKDSQP
PPTRK*
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spliced messenger RNA

>Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGAATC
TGAGGCACTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGG
AAATTGAGGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCA
CCACCAACTCGGAAGTGA
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protein sequence of Ggra10566.t1

>Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MGPGGLFSRIAQWLANELIVKGLSNNHAFQRFAVRSSQQVKELSKSAAEA
AKNISESESWVQMRKESEALRNQAKDFASALREEIEEGVRRAGQGKDSQP
PPTRK*
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mRNA from alignment at tig00000904_pilon:214678..215088-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGTAAT
GATGACGTATTCCAGAAATGCCTGTTTTGTCGATGTCAATGTTTCAGTCA
TTAGTTCTAACTAAATTTTTGTATCGTTGTGAATGTAGGAATCTGAGGCA
CTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGGAAATTGA
GGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCACCACCAA
CTCGGAAGTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:214678..215088-

>Ggra10566.t1 ID=Ggra10566.t1|Name=Ggra10566.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00000904_pilon:214678..215088- (Gracilaria gracilis GNS1m male)
ATGGGACCGGGGGGTCTGTTTTCAAGAATTGCTCAATGGTTGGCAAATGA
ACTTATCGTCAAAGGTCTATCGAACAACCATGCTTTCCAACGTTTCGCCG
TTCGCTCGTCTCAACAAGTCAAAGAACTGTCAAAGTCGGCAGCAGAGGCT
GCAAAAAACATATCCGAGAGTGAGAGTTGGGTGCAAATGAGAAAGGAATC
TGAGGCACTTCGGAACCAAGCTAAGGACTTTGCAAGTGCACTTCGAGAGG
AAATTGAGGAGGGTGTTAGAAGAGCAGGACAGGGAAAGGATTCCCAACCA
CCACCAACTCGGAAGTGA
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