Ggra10550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10550.t1
Unique NameGgra10550.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:165521..166891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704433.1
Preferred namePEX12
PFAMsPex2_Pex12
Max annot lvl2759|Eukaryota
KEGG koko:K03327,ko:K06653,ko:K13345
KEGG TC2.A.66.1,3.A.20.1
KEGG Pathwayko04111,ko04146,map04111,map04146
GOsGO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
Evalue1.95e-46
EggNOG OGsKOG0826@1|root,KOG0826@2759|Eukaryota
Descriptionprotein import into peroxisome matrix
COG categoryO
BRITEko00000,ko00001,ko02000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10550Ggra10550Gracilaria gracilis GNS1m malegenetig00000904_pilon 165521..166891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1Ggra10550.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 165521..166891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1.stop1Ggra10550.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 165521..165523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1.CDS1Ggra10550.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 165521..165655 -
Ggra10550.t1.CDS2Ggra10550.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 165738..165878 -
Ggra10550.t1.CDS3Ggra10550.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 165974..166891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1.exon1Ggra10550.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 165521..165655 -
Ggra10550.t1.exon2Ggra10550.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 165738..165878 -
Ggra10550.t1.exon3Ggra10550.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 165974..166891 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1.intron1Ggra10550.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 165656..165737 -
Ggra10550.t1.intron2Ggra10550.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 165879..165973 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10550.t1.start1Ggra10550.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 166889..166891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MSNIPSARPSFFEVYAAEQLDGALRPAFRYVLEVVSIRNPSLLRLANWSD
ELFSFLLIILESFQLSTEAALLSESFYSLRRSTSDSFEPNVYNRPLSTRN
VLSSVVYAVLIPHIRAKLDNWYSVQTGGAAAVMLQELNVSQPQAEEAVVH
TTPLPARSLLSGGHTSIRSILRIALLRLLRFPTVLIRLIKASIGFAKSET
FKRQVLIYYPKIRAVVDAVNLIFGISYLYGHTKYYNLSFALQGLILRRVS
TMDLLRLSVVHSSGRSTTPLLHAIGNFFERTMSLLRIAFFASIFGFRFLQ
YYYAAEAAAPRDLGVVIPPPAPLEPATGVNRELATAPGKCPICHQDRTNS
TACTTSGYVFCYLCIVSSLQTTQKCPVTLAPTTIDDLVRVYENGGNT*
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spliced messenger RNA

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTAT
TCCACCGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCG
CAACGGCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCT
ACCGCATGCACGACTTCAGGATATGTTTTCTGCTACCTCTGCATCGTGTC
AAGCCTTCAGACAACACAGAAATGTCCCGTTACCTTAGCGCCTACTACAA
TAGACGACCTTGTTCGAGTCTATGAAAACGGCGGTAATACATAA
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protein sequence of Ggra10550.t1

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MSNIPSARPSFFEVYAAEQLDGALRPAFRYVLEVVSIRNPSLLRLANWSD
ELFSFLLIILESFQLSTEAALLSESFYSLRRSTSDSFEPNVYNRPLSTRN
VLSSVVYAVLIPHIRAKLDNWYSVQTGGAAAVMLQELNVSQPQAEEAVVH
TTPLPARSLLSGGHTSIRSILRIALLRLLRFPTVLIRLIKASIGFAKSET
FKRQVLIYYPKIRAVVDAVNLIFGISYLYGHTKYYNLSFALQGLILRRVS
TMDLLRLSVVHSSGRSTTPLLHAIGNFFERTMSLLRIAFFASIFGFRFLQ
YYYAAEAAAPRDLGVVIPPPAPLEPATGVNRELATAPGKCPICHQDRTNS
TACTTSGYVFCYLCIVSSLQTTQKCPVTLAPTTIDDLVRVYENGGNT*
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mRNA from alignment at tig00000904_pilon:165521..166891-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGTACGGCCATGGTATAAGAGCAGTAGTGTTTT
ATTAAGGAAACTTTTGACTAACCACTCTTTTATCACGTCGTGCGTTCAAT
GTTAATCCACTAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTATTCCAC
CGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCGCAACG
GCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCTACCGC
ATGCGTACGTTGAGCACTTTCACAAATACTACGGCCGACAAGCGAACAAA
CTTCTAACTTGAGACTCCCGCAATGCCGATCCGAAGACGACTTCAGGATA
TGTTTTCTGCTACCTCTGCATCGTGTCAAGCCTTCAGACAACACAGAAAT
GTCCCGTTACCTTAGCGCCTACTACAATAGACGACCTTGTTCGAGTCTAT
GAAAACGGCGGTAATACATAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:165521..166891-

>Ggra10550.t1 ID=Ggra10550.t1|Name=Ggra10550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000904_pilon:165521..166891- (Gracilaria gracilis GNS1m male)
ATGAGCAATATTCCATCAGCTAGACCTTCATTCTTTGAGGTTTACGCAGC
TGAACAGCTCGATGGGGCGTTGAGACCAGCTTTCCGCTACGTTTTAGAAG
TGGTATCAATACGGAATCCTTCTCTCCTCCGACTGGCAAACTGGTCGGAT
GAATTGTTCTCGTTTCTTTTGATAATCCTGGAATCTTTTCAGTTAAGCAC
TGAGGCTGCTCTCTTATCTGAATCATTCTATTCTCTTCGAAGATCTACGT
CTGATTCCTTTGAGCCGAATGTATACAACCGCCCGCTTTCGACTCGCAAT
GTCTTGAGCAGCGTCGTATATGCTGTACTAATCCCGCATATCCGAGCAAA
GCTTGACAACTGGTATTCTGTTCAAACTGGAGGTGCTGCAGCCGTGATGC
TTCAAGAACTAAATGTTTCTCAACCGCAAGCAGAGGAAGCCGTTGTCCAC
ACTACCCCTCTGCCTGCACGATCACTTTTATCAGGTGGGCATACAAGTAT
CAGATCTATACTTAGGATTGCTCTTCTGCGCTTGCTCCGCTTTCCCACTG
TTTTGATTCGCCTCATAAAAGCATCTATTGGCTTCGCAAAGAGCGAAACA
TTCAAGCGACAGGTACTGATCTACTATCCAAAGATTCGCGCTGTTGTAGA
TGCAGTCAACTTGATATTTGGTATCTCCTATTTATACGGACATACGAAGT
ATTACAACTTGTCCTTCGCACTACAGGGCCTCATTTTGAGACGCGTAAGT
ACGATGGATCTTTTGCGGCTATCGGTTGTCCATTCTTCTGGTCGCTCAAC
GACACCTTTGCTTCATGCGATTGGCAATTTCTTTGAAAGGACGATGAGTT
TACTTCGAATAGCATTCTTTGCGAGCATATTTGGATTTCGCTTTCTGCAG
TACTATTACGCAGCTGAGGCTGCCGCGCCAAGAGATCTGGGTGTAGTTAT
TCCACCGCCCGCTCCACTTGAGCCAGCAACGGGTGTCAACCGTGAACTCG
CAACGGCACCAGGGAAATGTCCAATCTGTCATCAAGATCGAACGAATTCT
ACCGCATGCACGACTTCAGGATATGTTTTCTGCTACCTCTGCATCGTGTC
AAGCCTTCAGACAACACAGAAATGTCCCGTTACCTTAGCGCCTACTACAA
TAGACGACCTTGTTCGAGTCTATGAAAACGGCGGTAATACATAA
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