Ggra10582.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10582.t1
Unique NameGgra10582.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:314777..316348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1183438.GKIL_1048
Preferred namerbpD
PFAMsRRM_1
Max annot lvl1117|Cyanobacteria
Evalue2.79e-14
EggNOG OGsCOG0724@1|root,COG0724@2|Bacteria,1G7Q7@1117|Cyanobacteria
DescriptionPFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10582Ggra10582Gracilaria gracilis GNS1m malegenetig00000904_pilon 314777..316348 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10582.t1.stop1Ggra10582.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 314777..314779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10582.t1.CDS1Ggra10582.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 314777..316348 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10582.t1.exon1Ggra10582.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 314777..316348 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10582.t1.start1Ggra10582.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 316346..316348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10582.t1Ggra10582.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 314777..316348 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MSRTKKAAKAAKKSKRKDVAVADVPDAKPAPSAEVKLSKSAKRKSKDRPS
AVVSNANAVQLPDSTPKDSSKKDKKKKKKSKKKPPTPPPESDDESSDDSS
TSEEQSDSPPQSAQVAKKSKSKSRGKPEPEESSSSDEESSSDEEEAPAKV
KPKKQLKGKANGRKPAESDDESSDSDSDTPDQVPSAKQNGASKPSIKSTP
STSDSDSDQSSESEDDAPSKPSTKEQQADDSDSSESSEDESEEPKEKPKP
VKQVKGKANGKKAAADSSDGEESSSESEESSSDENAGEDEQKTPMEVDKP
PKSENDTGDDFQQKRKRESSQFEVQPNKRHQPTAAPDEELRVFVGGVPFS
CTEDELGSFLSECGEITDLFLPRDRETDRIRGYAFVSFAESSAVQAALKL
DGSFLKGRHLRINPAGSRPSNGPRRGGSRGRDGGRGGGRGGRGGRGGYVG
GFGGGFGGGFGGGRGGGRGGGRGGREWGRGGGQQGGRGRGFGNRGGFGGR
GGSSNFANGGVKGTKTTFEDDSD*
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spliced messenger RNA

>Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA
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protein sequence of Ggra10582.t1

>Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MSRTKKAAKAAKKSKRKDVAVADVPDAKPAPSAEVKLSKSAKRKSKDRPS
AVVSNANAVQLPDSTPKDSSKKDKKKKKKSKKKPPTPPPESDDESSDDSS
TSEEQSDSPPQSAQVAKKSKSKSRGKPEPEESSSSDEESSSDEEEAPAKV
KPKKQLKGKANGRKPAESDDESSDSDSDTPDQVPSAKQNGASKPSIKSTP
STSDSDSDQSSESEDDAPSKPSTKEQQADDSDSSESSEDESEEPKEKPKP
VKQVKGKANGKKAAADSSDGEESSSESEESSSDENAGEDEQKTPMEVDKP
PKSENDTGDDFQQKRKRESSQFEVQPNKRHQPTAAPDEELRVFVGGVPFS
CTEDELGSFLSECGEITDLFLPRDRETDRIRGYAFVSFAESSAVQAALKL
DGSFLKGRHLRINPAGSRPSNGPRRGGSRGRDGGRGGGRGGRGGRGGYVG
GFGGGFGGGFGGGRGGGRGGGRGGREWGRGGGQQGGRGRGFGNRGGFGGR
GGSSNFANGGVKGTKTTFEDDSD*
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mRNA from alignment at tig00000904_pilon:314777..316348-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:314777..316348-

>Ggra10582.t1 ID=Ggra10582.t1|Name=Ggra10582.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000904_pilon:314777..316348- (Gracilaria gracilis GNS1m male)
ATGTCTCGTACTAAGAAGGCTGCGAAGGCTGCTAAGAAGAGCAAGAGGAA
GGATGTCGCTGTCGCTGACGTTCCCGATGCAAAACCCGCCCCATCGGCGG
AGGTGAAGCTCTCGAAGAGCGCCAAGCGCAAGTCTAAAGACCGCCCGTCT
GCTGTCGTGTCTAACGCAAACGCCGTTCAGCTCCCTGATTCCACTCCCAA
GGACTCTTCCAAGAAGGACAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGC
CACCCACCCCTCCTCCCGAGTCCGATGATGAATCAAGTGATGACTCTTCC
ACCAGCGAAGAACAATCCGATTCACCGCCTCAGAGCGCTCAAGTGGCGAA
GAAGTCCAAATCCAAATCACGTGGAAAGCCCGAACCCGAGGAAAGCTCCA
GCTCGGACGAGGAATCGTCATCAGACGAGGAGGAGGCTCCTGCCAAGGTC
AAGCCTAAAAAGCAACTCAAAGGTAAAGCTAACGGCCGCAAGCCGGCTGA
GAGTGATGATGAAAGTAGTGACAGTGATTCTGACACCCCCGACCAAGTTC
CGTCCGCCAAGCAGAATGGAGCCTCCAAACCTTCTATCAAGTCTACTCCT
AGTACCAGTGATTCGGATAGTGACCAAAGCTCTGAGAGCGAGGATGATGC
CCCATCCAAGCCTTCCACCAAAGAGCAACAGGCTGACGACAGTGATAGCT
CCGAATCCTCTGAAGATGAAAGCGAGGAGCCGAAAGAAAAACCCAAACCC
GTCAAGCAGGTTAAGGGTAAGGCAAACGGGAAGAAGGCAGCTGCTGATTC
TTCTGATGGAGAGGAAAGCTCCAGCGAGTCAGAGGAGAGCTCCAGTGACG
AAAACGCTGGTGAAGATGAGCAGAAAACGCCAATGGAAGTAGACAAGCCC
CCCAAGTCAGAAAACGATACTGGGGATGACTTCCAACAGAAGAGGAAGCG
AGAGTCGTCCCAATTTGAAGTTCAGCCCAATAAGAGGCACCAGCCTACCG
CTGCTCCGGATGAAGAACTTCGTGTGTTCGTCGGCGGTGTGCCATTCTCT
TGCACGGAAGACGAGTTGGGAAGTTTCCTCTCGGAATGTGGCGAAATAAC
TGATCTGTTCCTCCCACGTGATAGAGAAACTGACCGTATCCGGGGCTATG
CCTTCGTGAGCTTTGCTGAATCATCTGCCGTACAAGCAGCCCTTAAGCTG
GACGGCAGCTTCTTGAAAGGCAGGCATCTGAGGATAAATCCCGCTGGGTC
AAGGCCTAGTAACGGTCCGAGGCGAGGTGGTTCCCGAGGACGTGATGGTG
GTCGTGGTGGTGGTCGTGGCGGACGCGGCGGTCGTGGTGGATACGTCGGT
GGCTTCGGTGGTGGCTTTGGTGGTGGCTTTGGTGGTGGTCGTGGTGGTGG
CCGTGGTGGTGGCCGTGGTGGCCGTGAATGGGGTCGTGGTGGCGGTCAGC
AAGGAGGCCGCGGTAGAGGCTTCGGTAATCGCGGTGGGTTTGGTGGTCGT
GGAGGCTCATCAAACTTTGCAAACGGAGGAGTTAAGGGAACAAAGACCAC
TTTCGAAGACGACAGTGACTGA
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