Ggra10585.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10585.t1
Unique NameGgra10585.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:320679..321697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008606188.1
PFAMsDFP
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00090
KEGG koko:K01922,ko:K03128
KEGG ReactionR04230
KEGG Pathwayko00770,ko01100,ko03022,map00770,map01100,map03022
KEGG ModuleM00120
GOsGO:0003674,GO:0003824,GO:0004632,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.61e-60
EggNOG OGsCOG0452@1|root,KOG2728@2759|Eukaryota
EC6.3.2.51
Descriptionphosphopantothenate--cysteine ligase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10585Ggra10585Gracilaria gracilis GNS1m malegenetig00000904_pilon 320679..321697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1Ggra10585.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 320679..321697 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1.start1Ggra10585.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 320679..320681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1.CDS1Ggra10585.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 320679..321383 +
Ggra10585.t1.CDS2Ggra10585.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 321470..321697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1.exon1Ggra10585.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 320679..321383 +
Ggra10585.t1.exon2Ggra10585.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 321470..321697 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1.intron1Ggra10585.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 321384..321469 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10585.t1.stop1Ggra10585.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 321695..321697 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MGDPLPSFQVFGTTVIAEAFERPKLEAFVRRAKNENLKIAVITSGGTSVP
LEQRAVRYLDNFSTGTRGARSAENFLIQRDQGHGGLSFKENAYAVVFLCR
EGSKLPFIQDISPQRIADLSQISDSEVKFQDKSMATALKKWKETQRRLFL
VTYKTVQEYLFSLFAVAQILRPLGKSVLFFLAAAVSDFYITSDRLPEHKI
QSKGEDLVITLSRVPKCLGLLRQEWAPEAFIISFKLETDSDLLAKKSGAA
LQNYGMNCVIGNLLQTRYQEVLIVDADGQRVLKSRNEDECLEATLVTELA
IMHERHIGTG*
back to top

spliced messenger RNA

>Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGCTCGAAACAGATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCA
CTTCAAAATTATGGGATGAATTGTGTTATCGGGAACTTATTACAGACTAG
ATACCAAGAAGTGCTGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGA
GCAGAAATGAGGATGAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCG
ATAATGCATGAACGTCACATTGGGACTGGCTAA
back to top

protein sequence of Ggra10585.t1

>Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MGDPLPSFQVFGTTVIAEAFERPKLEAFVRRAKNENLKIAVITSGGTSVP
LEQRAVRYLDNFSTGTRGARSAENFLIQRDQGHGGLSFKENAYAVVFLCR
EGSKLPFIQDISPQRIADLSQISDSEVKFQDKSMATALKKWKETQRRLFL
VTYKTVQEYLFSLFAVAQILRPLGKSVLFFLAAAVSDFYITSDRLPEHKI
QSKGEDLVITLSRVPKCLGLLRQEWAPEAFIISFKLETDSDLLAKKSGAA
LQNYGMNCVIGNLLQTRYQEVLIVDADGQRVLKSRNEDECLEATLVTELA
IMHERHIGTG*
back to top

mRNA from alignment at tig00000904_pilon:320679..321697+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGGTAAGTCTTGCGCAACTGCCAGTAAACTTTTTGGCTCTCGCGATG
ACTAACCTGTATACACTCGCGTGTTGTCCGAATGATCATAGCTCGAAACA
GATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCACTTCAAAATTATGG
GATGAATTGTGTTATCGGGAACTTATTACAGACTAGATACCAAGAAGTGC
TGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGAGCAGAAATGAGGAT
GAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCGATAATGCATGAACG
TCACATTGGGACTGGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:320679..321697+

>Ggra10585.t1 ID=Ggra10585.t1|Name=Ggra10585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000904_pilon:320679..321697+ (Gracilaria gracilis GNS1m male)
ATGGGGGATCCCCTCCCGTCTTTCCAAGTGTTTGGAACCACTGTTATTGC
AGAAGCTTTTGAAAGACCGAAGCTTGAAGCATTTGTTCGTCGCGCAAAAA
ATGAAAACCTTAAGATCGCCGTGATCACGTCTGGGGGCACATCGGTTCCT
TTAGAACAACGTGCTGTGAGGTATCTTGACAATTTCAGCACAGGTACCCG
AGGGGCTAGGTCCGCCGAAAATTTCCTGATACAGCGGGATCAAGGACATG
GGGGGTTAAGCTTCAAAGAAAATGCGTACGCTGTTGTCTTCTTGTGTCGA
GAAGGTTCGAAACTTCCTTTCATTCAAGATATATCTCCGCAAAGAATAGC
AGACTTAAGTCAAATATCAGACAGTGAAGTGAAATTCCAAGACAAATCCA
TGGCGACAGCATTGAAAAAATGGAAAGAGACACAACGTCGCCTGTTCTTA
GTCACTTACAAAACAGTTCAAGAGTATCTCTTTAGCTTATTTGCAGTGGC
ACAAATTCTGAGGCCGTTGGGGAAATCAGTTCTTTTCTTTCTGGCCGCCG
CTGTATCAGACTTTTACATCACTTCTGATCGGCTTCCTGAGCACAAAATC
CAGTCAAAAGGGGAAGACTTAGTAATTACTTTGAGTCGAGTTCCAAAATG
TCTCGGTTTGCTTCGGCAAGAATGGGCTCCTGAGGCTTTCATTATCTCCT
TCAAGCTCGAAACAGATTCAGACCTCTTAGCCAAAAAGTCAGGGGCTGCA
CTTCAAAATTATGGGATGAATTGTGTTATCGGGAACTTATTACAGACTAG
ATACCAAGAAGTGCTGATTGTCGACGCAGATGGCCAGCGAGTACTCAAGA
GCAGAAATGAGGATGAATGCTTGGAAGCGACGTTGGTGACTGAACTTGCG
ATAATGCATGAACGTCACATTGGGACTGGCTAA
back to top