Ggra8426.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8426.t1
Unique Name	Ggra8426.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:596777..598915 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8426	Ggra8426	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 596777..598915 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8426.t1.start1	Ggra8426.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 596777..596779 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8426.t1.CDS1	Ggra8426.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 596777..598915 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8426.t1.exon1	Ggra8426.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 596777..598915 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8426.t1.stop1	Ggra8426.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 598913..598915 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8426.t1	Ggra8426.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 596777..598915 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:596777..598915+
coding sequence from alignment at tig00000041_pilon:596777..598915+

mRNA sequence

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=713bp
MRIVAHNGPNWTRDSLATSPEHVAVAVRNTVLIYSHDATFQTELRATGGP
SRIASLSFCDAPCLTSLLAVASQGGHVRIFDVHARRIFRVLVEGGPACSA
VRFLEKLPFRVLVVSDSLCVFDIVQQVHVVVRRELPFKHVFLVELIPNLS
SYIILAGKRDKGACLCVANLYDENDIHVLVTGFAVHDIAIRHRPRHTHPY
VMAVASAKLSYPMFFTSQDGIQWVKLPDAKPHVPQQIRTLDSYDKQKKPL
CSKLLRTAVCWDVDQLLYTTDTRGAIYAWRVDDACQMRFFAQRHYAHSRQ
IFAVKTVTNNAIFSISMDRTLAKWCITHVAQPCLTLQWRSLRTQGPVTAL
AMSSHGQSANEVYISYSSASNSVACAKWIPGEHLFSLVAEACPSNPALGK
RKRETVSYVTTPDQLFDQSFSAVKVQSQTLFVFGFAEGKRGAFSITDGKV
NVGALQSDHSATLRQAVIADVVKKSNKKTESTNKNFVPSALNERRKNREV
GLSAPVSVLMPENVLKDDTVTGACLLPAKCHGEGEQMCFLLGSAKGRLYI
LFGGTEIRLLSQSLSVSSILCVEYEPTSSLIAVSDTNGLLITLKWSNTAL
SNQANGMELQVDTNSIHQYELPSAVRFMRWSESDQSEHSNVLVSSYLLLA
LQNGETLVWSSDTDGRLKRRAQIREHRGRVSGAVWFENRYILTAGEDGTV
RFWEMDQLPQSN*

spliced messenger RNA

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2139bp|location=Sequence derived from alignment at tig00000041_pilon:596777..598915+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAATCGTCGCCCACAACGGCCCCAACTGGACGCGAGATTCCCTGGC
AACGTCTCCAGAGCACGTGGCAGTCGCCGTTCGGAACACCGTGTTGATCT
ATTCGCACGACGCCACCTTTCAAACAGAGCTGCGAGCGACGGGCGGTCCT
TCGCGAATCGCCTCTCTTTCGTTTTGTGACGCGCCTTGTTTGACCTCTTT
GTTGGCGGTTGCCAGCCAGGGCGGCCACGTTCGTATCTTCGATGTGCATG
CGCGACGCATTTTTAGAGTGCTTGTCGAGGGAGGGCCCGCTTGTTCTGCG
GTGAGGTTTTTGGAGAAGCTGCCGTTTAGAGTGCTTGTCGTTTCGGATTC
TCTGTGTGTGTTTGACATTGTTCAACAGGTTCACGTTGTCGTTCGTAGAG
AGTTGCCTTTTAAACATGTATTCTTGGTGGAGCTCATTCCAAACTTGTCA
TCGTACATAATCCTGGCGGGTAAACGTGACAAAGGAGCTTGTCTATGTGT
TGCTAATCTTTATGATGAAAATGATATCCACGTTCTTGTTACGGGGTTTG
CGGTTcatgatatcgccattcgacatcgacctcgtcatACCCATCCTTAT
GTCATGGCTGTCGCGTCCGCAAAGCTTTCGTACCCAATGTTCTTCACGTC
TCAAGACGGAATTCAATGGGTAAAACTCCCAGATGCGAAACCACACGTAC
CGCAACAAATCCGCACCTTGGATAGTTATGATAAGCAGAAGAAACCGCTT
TGTTCCAAGTTATTGCGCACAGCTGTGTGTTGGGATGTCGATCAGCTTCT
GTACACAACCGATACAAGGGGGGCTATATACGCGTGGCGAGTGGATGATG
CATGTCAGATGCGCTTCTTTGCACAGCGACATTATGCTCATTCACGCCAG
ATCTTTGCCGTCAAGACTGTCACGAACAACGCCATCTTCTCCATTTCTAT
GGACCGTACGTTGGCAAAGTGGTGCATCACACATGTTGCACAGCCATGTC
TGACGCTTCAGTGGCGTTCATTGCGCACTCAAGGACCGGTGACGGCGCTT
GCAATGTCAAGTCATGGACAGAGTGCGAATGAAGTGTACATTTCGTATTC
TAGTGCTTCAAATTCCGTTGCTTGCGCGAAATGGATTCCAGGTGAGCATC
TATTTTCTCTCGTAGCTGAAGCTTGTCCATCTAATCCGGCGTTGGGAAAG
AGAAAACGAGAAACCGTGTCATATGTCACCACTCCTGATCAACTGTTTGA
CCAATCTTTCTCTGCTGTGAAAGTGCAGTCTCAGACATTGTTTGTTTTCG
GCTTTGCCGAGGGCAAGAGAGGTGCGTTTTCAATTACTGACGGGAAAGTG
AATGTTGGTGCATTGCAAAGCGATCACTCAGCAACATTAAGACAAGCTGT
GATTGCGGATGTAGTCAAAAAAAGCAATAAGAAGACTGAATCTACTAACA
AGAATTTTGTCCCGAGTGCGCTAAACGAACGGAGGAAGAATCGAGAAGTT
GGCTTAAGTGCCCCAGTGTCGGTGTTGATGCCAGAGAATGTATTGAAAGA
TGACACGGTGACTGGTGCTTGCCTTCTCCCGGCCAAGTGTCATGGTGAGG
GAGAGCAGATGTGTTTTCTGCTTGGTTCTGCGAAAGGACGTTTGTACATC
CTTTTTGGGGGAACCGAGATTAGGTTACTCTCACAGTCGTTGTCGGTTTC
CTCGATTCTTTGTGTTGAATATGAACCCACTTCGTCCTTGATTGCTGTGT
CTGATACAAATGGGTTACTGATAACGCTCAAGTGGTCCAACACTGCGTTG
TCAAATCAAGCGAATGGAATGGAACTGCAGGTCGATACCAACAGCATACA
TCAGTACGAGCTACCTAGCGCAGTTCGGTTCATGCGATGGTCCGAATCTG
ACCAAAGTGAGCACAGCAATGTATTGGTCTCCTCTTATCTCCTGCTCGCG
TTGCAGAACGGAGAAACGCTCGTATGGTCATCCGACACAGATGGGCGCCT
CAAACGAAGGGCTCAAATACGGGAGCATCGTGGTCGGGTTAGCGGAGCTG
TCTGGTTCGAAAACAGATATATCCTTACAGCAGGTGAGGATGGAACCGTT
CGCTTCTGGGAAATGGACCAACTTCCACAATCCAATTGA

protein sequence of Ggra8426.t1

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=713bp
MRIVAHNGPNWTRDSLATSPEHVAVAVRNTVLIYSHDATFQTELRATGGP
SRIASLSFCDAPCLTSLLAVASQGGHVRIFDVHARRIFRVLVEGGPACSA
VRFLEKLPFRVLVVSDSLCVFDIVQQVHVVVRRELPFKHVFLVELIPNLS
SYIILAGKRDKGACLCVANLYDENDIHVLVTGFAVHDIAIRHRPRHTHPY
VMAVASAKLSYPMFFTSQDGIQWVKLPDAKPHVPQQIRTLDSYDKQKKPL
CSKLLRTAVCWDVDQLLYTTDTRGAIYAWRVDDACQMRFFAQRHYAHSRQ
IFAVKTVTNNAIFSISMDRTLAKWCITHVAQPCLTLQWRSLRTQGPVTAL
AMSSHGQSANEVYISYSSASNSVACAKWIPGEHLFSLVAEACPSNPALGK
RKRETVSYVTTPDQLFDQSFSAVKVQSQTLFVFGFAEGKRGAFSITDGKV
NVGALQSDHSATLRQAVIADVVKKSNKKTESTNKNFVPSALNERRKNREV
GLSAPVSVLMPENVLKDDTVTGACLLPAKCHGEGEQMCFLLGSAKGRLYI
LFGGTEIRLLSQSLSVSSILCVEYEPTSSLIAVSDTNGLLITLKWSNTAL
SNQANGMELQVDTNSIHQYELPSAVRFMRWSESDQSEHSNVLVSSYLLLA
LQNGETLVWSSDTDGRLKRRAQIREHRGRVSGAVWFENRYILTAGEDGTV
RFWEMDQLPQSN*

mRNA from alignment at tig00000041_pilon:596777..598915+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2139bp|location=Sequence derived from alignment at tig00000041_pilon:596777..598915+ (Gracilaria gracilis GNS1m male)
ATGAGAATCGTCGCCCACAACGGCCCCAACTGGACGCGAGATTCCCTGGC
AACGTCTCCAGAGCACGTGGCAGTCGCCGTTCGGAACACCGTGTTGATCT
ATTCGCACGACGCCACCTTTCAAACAGAGCTGCGAGCGACGGGCGGTCCT
TCGCGAATCGCCTCTCTTTCGTTTTGTGACGCGCCTTGTTTGACCTCTTT
GTTGGCGGTTGCCAGCCAGGGCGGCCACGTTCGTATCTTCGATGTGCATG
CGCGACGCATTTTTAGAGTGCTTGTCGAGGGAGGGCCCGCTTGTTCTGCG
GTGAGGTTTTTGGAGAAGCTGCCGTTTAGAGTGCTTGTCGTTTCGGATTC
TCTGTGTGTGTTTGACATTGTTCAACAGGTTCACGTTGTCGTTCGTAGAG
AGTTGCCTTTTAAACATGTATTCTTGGTGGAGCTCATTCCAAACTTGTCA
TCGTACATAATCCTGGCGGGTAAACGTGACAAAGGAGCTTGTCTATGTGT
TGCTAATCTTTATGATGAAAATGATATCCACGTTCTTGTTACGGGGTTTG
CGGTTcatgatatcgccattcgacatcgacctcgtcatACCCATCCTTAT
GTCATGGCTGTCGCGTCCGCAAAGCTTTCGTACCCAATGTTCTTCACGTC
TCAAGACGGAATTCAATGGGTAAAACTCCCAGATGCGAAACCACACGTAC
CGCAACAAATCCGCACCTTGGATAGTTATGATAAGCAGAAGAAACCGCTT
TGTTCCAAGTTATTGCGCACAGCTGTGTGTTGGGATGTCGATCAGCTTCT
GTACACAACCGATACAAGGGGGGCTATATACGCGTGGCGAGTGGATGATG
CATGTCAGATGCGCTTCTTTGCACAGCGACATTATGCTCATTCACGCCAG
ATCTTTGCCGTCAAGACTGTCACGAACAACGCCATCTTCTCCATTTCTAT
GGACCGTACGTTGGCAAAGTGGTGCATCACACATGTTGCACAGCCATGTC
TGACGCTTCAGTGGCGTTCATTGCGCACTCAAGGACCGGTGACGGCGCTT
GCAATGTCAAGTCATGGACAGAGTGCGAATGAAGTGTACATTTCGTATTC
TAGTGCTTCAAATTCCGTTGCTTGCGCGAAATGGATTCCAGGTGAGCATC
TATTTTCTCTCGTAGCTGAAGCTTGTCCATCTAATCCGGCGTTGGGAAAG
AGAAAACGAGAAACCGTGTCATATGTCACCACTCCTGATCAACTGTTTGA
CCAATCTTTCTCTGCTGTGAAAGTGCAGTCTCAGACATTGTTTGTTTTCG
GCTTTGCCGAGGGCAAGAGAGGTGCGTTTTCAATTACTGACGGGAAAGTG
AATGTTGGTGCATTGCAAAGCGATCACTCAGCAACATTAAGACAAGCTGT
GATTGCGGATGTAGTCAAAAAAAGCAATAAGAAGACTGAATCTACTAACA
AGAATTTTGTCCCGAGTGCGCTAAACGAACGGAGGAAGAATCGAGAAGTT
GGCTTAAGTGCCCCAGTGTCGGTGTTGATGCCAGAGAATGTATTGAAAGA
TGACACGGTGACTGGTGCTTGCCTTCTCCCGGCCAAGTGTCATGGTGAGG
GAGAGCAGATGTGTTTTCTGCTTGGTTCTGCGAAAGGACGTTTGTACATC
CTTTTTGGGGGAACCGAGATTAGGTTACTCTCACAGTCGTTGTCGGTTTC
CTCGATTCTTTGTGTTGAATATGAACCCACTTCGTCCTTGATTGCTGTGT
CTGATACAAATGGGTTACTGATAACGCTCAAGTGGTCCAACACTGCGTTG
TCAAATCAAGCGAATGGAATGGAACTGCAGGTCGATACCAACAGCATACA
TCAGTACGAGCTACCTAGCGCAGTTCGGTTCATGCGATGGTCCGAATCTG
ACCAAAGTGAGCACAGCAATGTATTGGTCTCCTCTTATCTCCTGCTCGCG
TTGCAGAACGGAGAAACGCTCGTATGGTCATCCGACACAGATGGGCGCCT
CAAACGAAGGGCTCAAATACGGGAGCATCGTGGTCGGGTTAGCGGAGCTG
TCTGGTTCGAAAACAGATATATCCTTACAGCAGGTGAGGATGGAACCGTT
CGCTTCTGGGAAATGGACCAACTTCCACAATCCAATTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:596777..598915+

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2139bp|location=Sequence derived from alignment at tig00000041_pilon:596777..598915+ (Gracilaria gracilis GNS1m male)
ATGAGAATCGTCGCCCACAACGGCCCCAACTGGACGCGAGATTCCCTGGC
AACGTCTCCAGAGCACGTGGCAGTCGCCGTTCGGAACACCGTGTTGATCT
ATTCGCACGACGCCACCTTTCAAACAGAGCTGCGAGCGACGGGCGGTCCT
TCGCGAATCGCCTCTCTTTCGTTTTGTGACGCGCCTTGTTTGACCTCTTT
GTTGGCGGTTGCCAGCCAGGGCGGCCACGTTCGTATCTTCGATGTGCATG
CGCGACGCATTTTTAGAGTGCTTGTCGAGGGAGGGCCCGCTTGTTCTGCG
GTGAGGTTTTTGGAGAAGCTGCCGTTTAGAGTGCTTGTCGTTTCGGATTC
TCTGTGTGTGTTTGACATTGTTCAACAGGTTCACGTTGTCGTTCGTAGAG
AGTTGCCTTTTAAACATGTATTCTTGGTGGAGCTCATTCCAAACTTGTCA
TCGTACATAATCCTGGCGGGTAAACGTGACAAAGGAGCTTGTCTATGTGT
TGCTAATCTTTATGATGAAAATGATATCCACGTTCTTGTTACGGGGTTTG
CGGTTcatgatatcgccattcgacatcgacctcgtcatACCCATCCTTAT
GTCATGGCTGTCGCGTCCGCAAAGCTTTCGTACCCAATGTTCTTCACGTC
TCAAGACGGAATTCAATGGGTAAAACTCCCAGATGCGAAACCACACGTAC
CGCAACAAATCCGCACCTTGGATAGTTATGATAAGCAGAAGAAACCGCTT
TGTTCCAAGTTATTGCGCACAGCTGTGTGTTGGGATGTCGATCAGCTTCT
GTACACAACCGATACAAGGGGGGCTATATACGCGTGGCGAGTGGATGATG
CATGTCAGATGCGCTTCTTTGCACAGCGACATTATGCTCATTCACGCCAG
ATCTTTGCCGTCAAGACTGTCACGAACAACGCCATCTTCTCCATTTCTAT
GGACCGTACGTTGGCAAAGTGGTGCATCACACATGTTGCACAGCCATGTC
TGACGCTTCAGTGGCGTTCATTGCGCACTCAAGGACCGGTGACGGCGCTT
GCAATGTCAAGTCATGGACAGAGTGCGAATGAAGTGTACATTTCGTATTC
TAGTGCTTCAAATTCCGTTGCTTGCGCGAAATGGATTCCAGGTGAGCATC
TATTTTCTCTCGTAGCTGAAGCTTGTCCATCTAATCCGGCGTTGGGAAAG
AGAAAACGAGAAACCGTGTCATATGTCACCACTCCTGATCAACTGTTTGA
CCAATCTTTCTCTGCTGTGAAAGTGCAGTCTCAGACATTGTTTGTTTTCG
GCTTTGCCGAGGGCAAGAGAGGTGCGTTTTCAATTACTGACGGGAAAGTG
AATGTTGGTGCATTGCAAAGCGATCACTCAGCAACATTAAGACAAGCTGT
GATTGCGGATGTAGTCAAAAAAAGCAATAAGAAGACTGAATCTACTAACA
AGAATTTTGTCCCGAGTGCGCTAAACGAACGGAGGAAGAATCGAGAAGTT
GGCTTAAGTGCCCCAGTGTCGGTGTTGATGCCAGAGAATGTATTGAAAGA
TGACACGGTGACTGGTGCTTGCCTTCTCCCGGCCAAGTGTCATGGTGAGG
GAGAGCAGATGTGTTTTCTGCTTGGTTCTGCGAAAGGACGTTTGTACATC
CTTTTTGGGGGAACCGAGATTAGGTTACTCTCACAGTCGTTGTCGGTTTC
CTCGATTCTTTGTGTTGAATATGAACCCACTTCGTCCTTGATTGCTGTGT
CTGATACAAATGGGTTACTGATAACGCTCAAGTGGTCCAACACTGCGTTG
TCAAATCAAGCGAATGGAATGGAACTGCAGGTCGATACCAACAGCATACA
TCAGTACGAGCTACCTAGCGCAGTTCGGTTCATGCGATGGTCCGAATCTG
ACCAAAGTGAGCACAGCAATGTATTGGTCTCCTCTTATCTCCTGCTCGCG
TTGCAGAACGGAGAAACGCTCGTATGGTCATCCGACACAGATGGGCGCCT
CAAACGAAGGGCTCAAATACGGGAGCATCGTGGTCGGGTTAGCGGAGCTG
TCTGGTTCGAAAACAGATATATCCTTACAGCAGGTGAGGATGGAACCGTT
CGCTTCTGGGAAATGGACCAACTTCCACAATCCAATTGA