Ggra10589.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10589.t1
Unique NameGgra10589.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:327669..328424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703947.1
PFAMsDFRP_C
Max annot lvl2759|Eukaryota
Evalue1.53e-25
EggNOG OGs2A62M@1|root,2RYB1@2759|Eukaryota
DescriptionDRG Family Regulatory Proteins, Tma46
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10589Ggra10589Gracilaria gracilis GNS1m malegenetig00000904_pilon 327669..328424 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10589.t1.start1Ggra10589.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 327669..327671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10589.t1.CDS1Ggra10589.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 327669..328424 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10589.t1.exon1Ggra10589.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 327669..328424 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10589.t1.stop1Ggra10589.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 328422..328424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10589.t1Ggra10589.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 327669..328424 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MPPKKKKAEEQKKKIVDDKTFGLKNKKKSRKVQQYVETVKKQANQKVDGP
RKRSAGAGSSSAASNARLAQMQARLAELELMNQPVKDKPKKMSAEEAERK
RLEEEAEKERIRIANLPVEDQIEEERAKLTTRTPVTKELFLVWKEEKMSE
KKAAEEAKKAVAYKKMSKAERSRGQGLTGRELFQANADIFVDDEEADDTV
LKADNDYTGSDDENHATLSDVQPDAALFEGEADGGLPESAEVTVGDESLF
T*
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spliced messenger RNA

>Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG
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protein sequence of Ggra10589.t1

>Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MPPKKKKAEEQKKKIVDDKTFGLKNKKKSRKVQQYVETVKKQANQKVDGP
RKRSAGAGSSSAASNARLAQMQARLAELELMNQPVKDKPKKMSAEEAERK
RLEEEAEKERIRIANLPVEDQIEEERAKLTTRTPVTKELFLVWKEEKMSE
KKAAEEAKKAVAYKKMSKAERSRGQGLTGRELFQANADIFVDDEEADDTV
LKADNDYTGSDDENHATLSDVQPDAALFEGEADGGLPESAEVTVGDESLF
T*
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mRNA from alignment at tig00000904_pilon:327669..328424+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:327669..328424+

>Ggra10589.t1 ID=Ggra10589.t1|Name=Ggra10589.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000904_pilon:327669..328424+ (Gracilaria gracilis GNS1m male)
ATGCCTCCGAAGAAAAAAAAGGCCGAAGAGCAGAAGAAGAAAATAGTCGA
CGACAAGACTTTTGGGCTCAAGAACAAGAAAAAGAGTCGCAAGGTTCAGC
AATATGTGGAAACTGTTAAGAAGCAGGCAAATCAGAAGGTTGACGGTCCG
CGAAAGAGGTCGGCCGGTGCAGGGTCTTCTTCGGCTGCGAGCAATGCCCG
CCTCGCCCAAATGCAGGCTCGACTCGCAGAGCTTGAGCTCATGAACCAAC
CTGTGAAGGACAAGCCGAAGAAGATGTCTGCTGAAGAGGCAGAGCGTAAG
CGACTCGAAGAGGAAGCTGAGAAGGAAAGAATTCGAATCGCTAATCTACC
TGTAGAGGACCAGATTGAAGAGGAGCGAGCAAAGCTTACCACACGTACTC
CGGTCACCAAGGAACTCTTCCTCGTATGGAAAGAAGAGAAAATGAGCGAG
AAAAAAGCTGCGGAAGAAGCAAAGAAAGCTGTTGCTTACAAGAAGATGTC
CAAAGCGGAGAGGTCTAGGGGTCAGGGCTTAACTGGGAGGGAACTGTTTC
AGGCTAATGCTGATATCTTCGTTGACGACGAAGAGGCGGACGATACTGTA
CTTAAAGCCGATAATGATTATACCGGATCCGACGACGAAAATCATGCTAC
CCTCTCTGACGTGCAACCAGATGCGGCTTTGTTCGAAGGGGAGGCTGATG
GTGGTTTACCTGAGTCGGCTGAGGTCACGGTTGGCGACGAATCTTTATTC
ACTTAG
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