Ggra10569.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10569.t1
Unique NameGgra10569.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:232213..233277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10569Ggra10569Gracilaria gracilis GNS1m malegenetig00000904_pilon 232213..233277 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10569.t1.stop1Ggra10569.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 232213..232215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10569.t1.CDS1Ggra10569.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 232213..233277 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10569.t1.exon1Ggra10569.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 232213..233277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10569.t1.start1Ggra10569.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 233275..233277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10569.t1Ggra10569.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 232213..233277 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10569.t1 ID=Ggra10569.t1|Name=Ggra10569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MLLFSGDFLHVPLHLLFLRTVLQLWRSHAVDGAGMLRALDSCEQLGAVNH
FMEGEALWRLYQQVAPQLTRPLEHLEQQPCYQSQSSEITSQFSAFESKLS
HAQSVNHLHALTHVYTSYATFVKQSHPLSCISMCECMLAAAYSHPLACLH
YLSYLATLADKRRLVAVADHAIRNVPTCIPVWSHAVLATKYHPNPEQQMC
SVLPRAYPFDTTSEQYEAAEALSKHAWSLYEPLAAPTSLLPALNQYLRFN
MLHSVHWASATCFAVAVIAADNHFNSAAQLFQSVLNARPGETKWLLQFAT
VISTKSRHPVRHIFKQAMTQSHFPIDSNILRDAWYAFELDVTTEKNPPAQ
TAPC*
back to top

spliced messenger RNA

>Ggra10569.t1 ID=Ggra10569.t1|Name=Ggra10569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:232213..233277- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTATTTTCGGGCGACTTTCTTCACGTACCACTGCACCTGCTGTT
CCTGCGCACCGTGCTGCAGCTATGGCGCTCCCACGCTGTCGATGGCGCGG
GCATGCTGCGTGCATTAGACAGCTGCGAGCAACTTGGCGCCGTGAATCAC
TTCATGGAGGGCGAGGCGTTGTGGCGCTTGTATCAACAGGTGGCGCCGCA
GTTGACGCGCCCACTTGAGCACTTAGAACAGCAGCCGTGTTATCAGTCGC
AATCGTCCGAGATCACTTCTCAATTTAGCGCCTTCGAGAGCAAGTTGAGC
CACGCTCAATCGGTAAACCACCTGCACGCGCTCACGCATGTTTACACCTC
GTACGCCACTTTTGTCAAACAATCGCACCCTCTCTCCTGCATCAGTATGT
GTGAGTGCATGCTTGCTGCCGCCTACTCCCACCCGCTCGCCTGTCTGCAT
TACCTCTCGTATCTTGCCACACTTGCCGACAAGCGCCGTCTTGTTGCCGT
CGCCGATCACGCCATTCGCAACGTGCCCACCTGCATTCCCGTGTGGTCTC
ACGCTGTACTCGCCACCAAATACCATCCAAACCCCGAGCAACAGATGTGC
AGCGTGCTGCCTCGCGCCTACCCGTTCGACACCACAAGCGAGCAGTATGA
AGCCGCCGAGGCGCTCTCCAAACACGCCTGGTCGCTCTATGAGCCGCTCG
CCGCCCCCACCTCCCTGCTGCCCGCCTTGAATCAATACTTGCGCTTCAAT
ATGTTGCACTCCGTGCATTGGGCCTCTGCTACCTGCTTTGCTGTCGCCGT
AATTGCAGCTGACAATCACTTCAACAGCGCTGCTCAGCTGTTTCAGAGTG
TGCTCAATGCCAGACCAGGTGAGACAAAATGGCTGCTTCAATTTGCCACC
GTCATTTCTACCAAATCTCGGCATCCTGTTCGCCACATATTTAAACAGGC
AATGACGCAGTCGCATTTCCCGATCGATTCCAACATTCTGCGCGATGCTT
GGTACGCCTTTGAGCTCGACGTCACAACCGAAAAAAACCCTCCTGCACAG
ACTGCACCTTGTTGA
back to top

protein sequence of Ggra10569.t1

>Ggra10569.t1 ID=Ggra10569.t1|Name=Ggra10569.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MLLFSGDFLHVPLHLLFLRTVLQLWRSHAVDGAGMLRALDSCEQLGAVNH
FMEGEALWRLYQQVAPQLTRPLEHLEQQPCYQSQSSEITSQFSAFESKLS
HAQSVNHLHALTHVYTSYATFVKQSHPLSCISMCECMLAAAYSHPLACLH
YLSYLATLADKRRLVAVADHAIRNVPTCIPVWSHAVLATKYHPNPEQQMC
SVLPRAYPFDTTSEQYEAAEALSKHAWSLYEPLAAPTSLLPALNQYLRFN
MLHSVHWASATCFAVAVIAADNHFNSAAQLFQSVLNARPGETKWLLQFAT
VISTKSRHPVRHIFKQAMTQSHFPIDSNILRDAWYAFELDVTTEKNPPAQ
TAPC*
back to top

mRNA from alignment at tig00000904_pilon:232213..233277-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10569.t1 ID=Ggra10569.t1|Name=Ggra10569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:232213..233277- (Gracilaria gracilis GNS1m male)
ATGCTGCTATTTTCGGGCGACTTTCTTCACGTACCACTGCACCTGCTGTT
CCTGCGCACCGTGCTGCAGCTATGGCGCTCCCACGCTGTCGATGGCGCGG
GCATGCTGCGTGCATTAGACAGCTGCGAGCAACTTGGCGCCGTGAATCAC
TTCATGGAGGGCGAGGCGTTGTGGCGCTTGTATCAACAGGTGGCGCCGCA
GTTGACGCGCCCACTTGAGCACTTAGAACAGCAGCCGTGTTATCAGTCGC
AATCGTCCGAGATCACTTCTCAATTTAGCGCCTTCGAGAGCAAGTTGAGC
CACGCTCAATCGGTAAACCACCTGCACGCGCTCACGCATGTTTACACCTC
GTACGCCACTTTTGTCAAACAATCGCACCCTCTCTCCTGCATCAGTATGT
GTGAGTGCATGCTTGCTGCCGCCTACTCCCACCCGCTCGCCTGTCTGCAT
TACCTCTCGTATCTTGCCACACTTGCCGACAAGCGCCGTCTTGTTGCCGT
CGCCGATCACGCCATTCGCAACGTGCCCACCTGCATTCCCGTGTGGTCTC
ACGCTGTACTCGCCACCAAATACCATCCAAACCCCGAGCAACAGATGTGC
AGCGTGCTGCCTCGCGCCTACCCGTTCGACACCACAAGCGAGCAGTATGA
AGCCGCCGAGGCGCTCTCCAAACACGCCTGGTCGCTCTATGAGCCGCTCG
CCGCCCCCACCTCCCTGCTGCCCGCCTTGAATCAATACTTGCGCTTCAAT
ATGTTGCACTCCGTGCATTGGGCCTCTGCTACCTGCTTTGCTGTCGCCGT
AATTGCAGCTGACAATCACTTCAACAGCGCTGCTCAGCTGTTTCAGAGTG
TGCTCAATGCCAGACCAGGTGAGACAAAATGGCTGCTTCAATTTGCCACC
GTCATTTCTACCAAATCTCGGCATCCTGTTCGCCACATATTTAAACAGGC
AATGACGCAGTCGCATTTCCCGATCGATTCCAACATTCTGCGCGATGCTT
GGTACGCCTTTGAGCTCGACGTCACAACCGAAAAAAACCCTCCTGCACAG
ACTGCACCTTGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:232213..233277-

>Ggra10569.t1 ID=Ggra10569.t1|Name=Ggra10569.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000904_pilon:232213..233277- (Gracilaria gracilis GNS1m male)
ATGCTGCTATTTTCGGGCGACTTTCTTCACGTACCACTGCACCTGCTGTT
CCTGCGCACCGTGCTGCAGCTATGGCGCTCCCACGCTGTCGATGGCGCGG
GCATGCTGCGTGCATTAGACAGCTGCGAGCAACTTGGCGCCGTGAATCAC
TTCATGGAGGGCGAGGCGTTGTGGCGCTTGTATCAACAGGTGGCGCCGCA
GTTGACGCGCCCACTTGAGCACTTAGAACAGCAGCCGTGTTATCAGTCGC
AATCGTCCGAGATCACTTCTCAATTTAGCGCCTTCGAGAGCAAGTTGAGC
CACGCTCAATCGGTAAACCACCTGCACGCGCTCACGCATGTTTACACCTC
GTACGCCACTTTTGTCAAACAATCGCACCCTCTCTCCTGCATCAGTATGT
GTGAGTGCATGCTTGCTGCCGCCTACTCCCACCCGCTCGCCTGTCTGCAT
TACCTCTCGTATCTTGCCACACTTGCCGACAAGCGCCGTCTTGTTGCCGT
CGCCGATCACGCCATTCGCAACGTGCCCACCTGCATTCCCGTGTGGTCTC
ACGCTGTACTCGCCACCAAATACCATCCAAACCCCGAGCAACAGATGTGC
AGCGTGCTGCCTCGCGCCTACCCGTTCGACACCACAAGCGAGCAGTATGA
AGCCGCCGAGGCGCTCTCCAAACACGCCTGGTCGCTCTATGAGCCGCTCG
CCGCCCCCACCTCCCTGCTGCCCGCCTTGAATCAATACTTGCGCTTCAAT
ATGTTGCACTCCGTGCATTGGGCCTCTGCTACCTGCTTTGCTGTCGCCGT
AATTGCAGCTGACAATCACTTCAACAGCGCTGCTCAGCTGTTTCAGAGTG
TGCTCAATGCCAGACCAGGTGAGACAAAATGGCTGCTTCAATTTGCCACC
GTCATTTCTACCAAATCTCGGCATCCTGTTCGCCACATATTTAAACAGGC
AATGACGCAGTCGCATTTCCCGATCGATTCCAACATTCTGCGCGATGCTT
GGTACGCCTTTGAGCTCGACGTCACAACCGAAAAAAACCCTCCTGCACAG
ACTGCACCTTGTTGA
back to top