Ggra10567.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10567.t1
Unique NameGgra10567.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:216081..217376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD33288
PFAMsAdap_comp_sub,Clat_adaptor_s
Max annot lvl2759|Eukaryota
KEGG koko:K12393
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002090,GO:0002092,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009605,GO:0009628,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0021700,GO:0022607,GO:0030030,GO:0030031,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030141,GO:0030154,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030669,GO:0031090,GO:0031323,GO:0031325,GO:0031410,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033218,GO:0033365,GO:0034613,GO:0035579,GO:0035646,GO:0036230,GO:0040025,GO:0042119,GO:0042277,GO:0042581,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043473,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044782,GO:0045055,GO:0045176,GO:0045184,GO:0045321,GO:0045334,GO:0045807,GO:0046903,GO:0046907,GO:0048002,GO:0048066,GO:0048259,GO:0048260,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0050690,GO:0050750,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060341,GO:0060627,GO:0061512,GO:0065003,GO:0065007,GO:0070325,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0097499,GO:0097500,GO:0097708,GO:0098588,GO:0098693,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099503,GO:0120031,GO:0120036,GO:1900242,GO:1900244,GO:1903421,GO:1903423,GO:1903441,GO:1990778
Evalue2.67e-191
EggNOG OGsKOG0937@1|root,KOG0937@2759|Eukaryota
Descriptionvesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10567Ggra10567Gracilaria gracilis GNS1m malegenetig00000904_pilon 216081..217376 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10567.t1.stop1Ggra10567.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 216081..216083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10567.t1.CDS1Ggra10567.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 216081..217376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10567.t1.exon1Ggra10567.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 216081..217376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10567.t1.start1Ggra10567.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 217374..217376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10567.t1Ggra10567.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 216081..217376 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10567.t1 ID=Ggra10567.t1|Name=Ggra10567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MVASSIFILDSRGKTIISRNFRGDIPMDVINIFKQRVFEAEDDSQITPFF
RNEEKGINFVHVRHANIYLVAVTRRNSNATMILAFLYKLVQVFTEYFRDV
NEESIRDNFVVIYELLDEMMDFGFPQISESKILRKYITQDYKVSESTGVL
PVAATNAVSWRSEGIKHSRNEVFLDVIEKVNILVSGSGNLLRSEIVGKLV
MKSYLSGMPNLKLGLNDRLQFEASAARGGPERKGKSVDLEDIKFHQCVRL
AKFENDRTISFIPPDGTFELMSYRLNTQVKPPIWVDAVIEQRATRVDYIV
KARTQLKPRAIANNVKIAIPVLPDVVSPSFKCTSGRAKYAPEKDAVVWSI
KQFKAGRDAVMRGHFSLPSIGKATERENATKRPICVEFEVPYFTISGLQV
RFLKVIEKSGYQAAPWVRYKMIAGDYQIRMS*
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spliced messenger RNA

>Ggra10567.t1 ID=Ggra10567.t1|Name=Ggra10567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000904_pilon:216081..217376- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCTCGTCGATCTTCATTCTGGACTCTCGAGGAAAGACCATAAT
TTCAAGAAACTTTCGGGGGGATATACCAATGGATGTCATAAACATATTCA
AACAGAGGGTCTTCGAAGCAGAAGATGATTCTCAGATAACACCATTCTTT
AGAAACGAAGAGAAGGGAATTAATTTTGTTCATGTTCGCCACGCTAACAT
TTACTTGGTCGCGGTAACGCGGCGGAATTCAAACGCGACGATGATCCTTG
CCTTTCTATACAAGCTAGTTCAAGTGTTTACTGAGTACTTCCGGGATGTT
AATGAAGAATCAATACGAGATAATTTCGTTGTGATATACGAGCTTCTGGA
TGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAGTCGAAGATCTTAC
GAAAGTATATTACTCAAGATTACAAGGTGTCGGAGTCGACCGGTGTACTA
CCAGTAGCGGCAACTAATGCTGTTTCGTGGAGGAGTGAGGGGATCAAGCA
CTCTAGAAACGAGGTGTTCCTTGATGTGATTGAGAAGGTTAACATTCTGG
TTTCAGGATCAGGGAACCTTCTGCGCTCAGAAATTGTCGGAAAGCTTGTC
ATGAAGTCTTACCTGAGCGGCATGCCAAACCTGAAGCTTGGCTTGAACGA
TAGATTACAATTTGAGGCCAGCGCAGCCAGAGGCGGTCCCGAAAGGAAGG
GTAAGTCTGTGGATTTAGAGGATATCAAATTTCATCAATGCGTGCGACTT
GCCAAGTTCGAAAACGATCGTACAATCTCATTTATACCCCCAGATGGCAC
ATTCGAATTGATGAGTTATCGGCTCAACACGCAGGTAAAACCGCCTATTT
GGGTTGATGCAGTTATCGAACAAAGAGCTACTCGGGTGGACTACATCGTC
AAAGCGCGGACGCAGTTAAAACCGCGTGCTATTGCGAACAATGTGAAGAT
TGCTATCCCGGTGCTTCCAGATGTAGTATCCCCAAGCTTCAAATGCACCT
CTGGAAGAGCAAAGTACGCGCCCGAAAAAGATGCCGTTGTCTGGTCCATT
AAGCAATTCAAGGCAGGAAGAGATGCGGTTATGCGCGGACATTTCTCACT
ACCTAGCATTGGAAAAGCAACAGAACGAGAAAATGCCACCAAGCGACCAA
TTTGCGTTGAGTTTGAGGTACCGTACTTCACGATTTCTGGTCTGCAGGTT
AGATTCTTGAAAGTGATTGAGAAATCTGGATATCAAGCAGCGCCCTGGGT
TAGATATAAGATGATAGCTGGCGATTACCAAATTCGTATGTCATAG
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protein sequence of Ggra10567.t1

>Ggra10567.t1 ID=Ggra10567.t1|Name=Ggra10567.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MVASSIFILDSRGKTIISRNFRGDIPMDVINIFKQRVFEAEDDSQITPFF
RNEEKGINFVHVRHANIYLVAVTRRNSNATMILAFLYKLVQVFTEYFRDV
NEESIRDNFVVIYELLDEMMDFGFPQISESKILRKYITQDYKVSESTGVL
PVAATNAVSWRSEGIKHSRNEVFLDVIEKVNILVSGSGNLLRSEIVGKLV
MKSYLSGMPNLKLGLNDRLQFEASAARGGPERKGKSVDLEDIKFHQCVRL
AKFENDRTISFIPPDGTFELMSYRLNTQVKPPIWVDAVIEQRATRVDYIV
KARTQLKPRAIANNVKIAIPVLPDVVSPSFKCTSGRAKYAPEKDAVVWSI
KQFKAGRDAVMRGHFSLPSIGKATERENATKRPICVEFEVPYFTISGLQV
RFLKVIEKSGYQAAPWVRYKMIAGDYQIRMS*
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mRNA from alignment at tig00000904_pilon:216081..217376-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10567.t1 ID=Ggra10567.t1|Name=Ggra10567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000904_pilon:216081..217376- (Gracilaria gracilis GNS1m male)
ATGGTGGCCTCGTCGATCTTCATTCTGGACTCTCGAGGAAAGACCATAAT
TTCAAGAAACTTTCGGGGGGATATACCAATGGATGTCATAAACATATTCA
AACAGAGGGTCTTCGAAGCAGAAGATGATTCTCAGATAACACCATTCTTT
AGAAACGAAGAGAAGGGAATTAATTTTGTTCATGTTCGCCACGCTAACAT
TTACTTGGTCGCGGTAACGCGGCGGAATTCAAACGCGACGATGATCCTTG
CCTTTCTATACAAGCTAGTTCAAGTGTTTACTGAGTACTTCCGGGATGTT
AATGAAGAATCAATACGAGATAATTTCGTTGTGATATACGAGCTTCTGGA
TGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAGTCGAAGATCTTAC
GAAAGTATATTACTCAAGATTACAAGGTGTCGGAGTCGACCGGTGTACTA
CCAGTAGCGGCAACTAATGCTGTTTCGTGGAGGAGTGAGGGGATCAAGCA
CTCTAGAAACGAGGTGTTCCTTGATGTGATTGAGAAGGTTAACATTCTGG
TTTCAGGATCAGGGAACCTTCTGCGCTCAGAAATTGTCGGAAAGCTTGTC
ATGAAGTCTTACCTGAGCGGCATGCCAAACCTGAAGCTTGGCTTGAACGA
TAGATTACAATTTGAGGCCAGCGCAGCCAGAGGCGGTCCCGAAAGGAAGG
GTAAGTCTGTGGATTTAGAGGATATCAAATTTCATCAATGCGTGCGACTT
GCCAAGTTCGAAAACGATCGTACAATCTCATTTATACCCCCAGATGGCAC
ATTCGAATTGATGAGTTATCGGCTCAACACGCAGGTAAAACCGCCTATTT
GGGTTGATGCAGTTATCGAACAAAGAGCTACTCGGGTGGACTACATCGTC
AAAGCGCGGACGCAGTTAAAACCGCGTGCTATTGCGAACAATGTGAAGAT
TGCTATCCCGGTGCTTCCAGATGTAGTATCCCCAAGCTTCAAATGCACCT
CTGGAAGAGCAAAGTACGCGCCCGAAAAAGATGCCGTTGTCTGGTCCATT
AAGCAATTCAAGGCAGGAAGAGATGCGGTTATGCGCGGACATTTCTCACT
ACCTAGCATTGGAAAAGCAACAGAACGAGAAAATGCCACCAAGCGACCAA
TTTGCGTTGAGTTTGAGGTACCGTACTTCACGATTTCTGGTCTGCAGGTT
AGATTCTTGAAAGTGATTGAGAAATCTGGATATCAAGCAGCGCCCTGGGT
TAGATATAAGATGATAGCTGGCGATTACCAAATTCGTATGTCATAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:216081..217376-

>Ggra10567.t1 ID=Ggra10567.t1|Name=Ggra10567.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000904_pilon:216081..217376- (Gracilaria gracilis GNS1m male)
ATGGTGGCCTCGTCGATCTTCATTCTGGACTCTCGAGGAAAGACCATAAT
TTCAAGAAACTTTCGGGGGGATATACCAATGGATGTCATAAACATATTCA
AACAGAGGGTCTTCGAAGCAGAAGATGATTCTCAGATAACACCATTCTTT
AGAAACGAAGAGAAGGGAATTAATTTTGTTCATGTTCGCCACGCTAACAT
TTACTTGGTCGCGGTAACGCGGCGGAATTCAAACGCGACGATGATCCTTG
CCTTTCTATACAAGCTAGTTCAAGTGTTTACTGAGTACTTCCGGGATGTT
AATGAAGAATCAATACGAGATAATTTCGTTGTGATATACGAGCTTCTGGA
TGAAATGATGGACTTCGGCTTTCCTCAAATATCTGAGTCGAAGATCTTAC
GAAAGTATATTACTCAAGATTACAAGGTGTCGGAGTCGACCGGTGTACTA
CCAGTAGCGGCAACTAATGCTGTTTCGTGGAGGAGTGAGGGGATCAAGCA
CTCTAGAAACGAGGTGTTCCTTGATGTGATTGAGAAGGTTAACATTCTGG
TTTCAGGATCAGGGAACCTTCTGCGCTCAGAAATTGTCGGAAAGCTTGTC
ATGAAGTCTTACCTGAGCGGCATGCCAAACCTGAAGCTTGGCTTGAACGA
TAGATTACAATTTGAGGCCAGCGCAGCCAGAGGCGGTCCCGAAAGGAAGG
GTAAGTCTGTGGATTTAGAGGATATCAAATTTCATCAATGCGTGCGACTT
GCCAAGTTCGAAAACGATCGTACAATCTCATTTATACCCCCAGATGGCAC
ATTCGAATTGATGAGTTATCGGCTCAACACGCAGGTAAAACCGCCTATTT
GGGTTGATGCAGTTATCGAACAAAGAGCTACTCGGGTGGACTACATCGTC
AAAGCGCGGACGCAGTTAAAACCGCGTGCTATTGCGAACAATGTGAAGAT
TGCTATCCCGGTGCTTCCAGATGTAGTATCCCCAAGCTTCAAATGCACCT
CTGGAAGAGCAAAGTACGCGCCCGAAAAAGATGCCGTTGTCTGGTCCATT
AAGCAATTCAAGGCAGGAAGAGATGCGGTTATGCGCGGACATTTCTCACT
ACCTAGCATTGGAAAAGCAACAGAACGAGAAAATGCCACCAAGCGACCAA
TTTGCGTTGAGTTTGAGGTACCGTACTTCACGATTTCTGGTCTGCAGGTT
AGATTCTTGAAAGTGATTGAGAAATCTGGATATCAAGCAGCGCCCTGGGT
TAGATATAAGATGATAGCTGGCGATTACCAAATTCGTATGTCATAG
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