Ggra10561.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10561.t1
Unique NameGgra10561.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:201840..203090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008878878.1
Preferred nameAPEX1
PFAMsExo_endo_phos
Max annot lvl2759|Eukaryota
KEGG koko:K01142,ko:K10771
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
GOsGO:0000228,GO:0000302,GO:0000723,GO:0000781,GO:0000784,GO:0001947,GO:0002009,GO:0002119,GO:0002164,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003691,GO:0003712,GO:0003713,GO:0003714,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0004540,GO:0004844,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005815,GO:0005840,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006286,GO:0006304,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007275,GO:0007346,GO:0007368,GO:0007389,GO:0007507,GO:0007568,GO:0008015,GO:0008081,GO:0008134,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010941,GO:0012505,GO:0014070,GO:0014074,GO:0014910,GO:0014912,GO:0015630,GO:0016043,GO:0016070,GO:0016311,GO:0016491,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016798,GO:0016799,GO:0016888,GO:0016889,GO:0016890,GO:0016891,GO:0016893,GO:0016894,GO:0016895,GO:0019104,GO:0019219,GO:0019222,GO:0019725,GO:0030334,GO:0030336,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035050,GO:0035239,GO:0035295,GO:0035510,GO:0035690,GO:0040012,GO:0040013,GO:0042162,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043412,GO:0043434,GO:0043487,GO:0043488,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0044877,GO:0045454,GO:0045787,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046683,GO:0046872,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051276,GO:0051591,GO:0051716,GO:0051726,GO:0052720,GO:0055114,GO:0060047,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061013,GO:0061371,GO:0065007,GO:0065008,GO:0070013,GO:0070301,GO:0070887,GO:0070988,GO:0071236,GO:0071310,GO:0071320,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080111,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097237,GO:0097506,GO:0097698,GO:0098501,GO:0098502,GO:0098687,GO:0140097,GO:0140098,GO:0140110,GO:1900087,GO:1901360,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2000045,GO:2000145,GO:2000146,GO:2001141
Evalue5.36e-54
EggNOG OGsCOG0708@1|root,KOG1294@2759|Eukaryota
EC3.1.11.2,4.2.99.18
Descriptiondouble-stranded DNA 3'-5' exodeoxyribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10561Ggra10561Gracilaria gracilis GNS1m malegenetig00000904_pilon 201840..203090 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10561.t1.start1Ggra10561.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 201840..201842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10561.t1.CDS1Ggra10561.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 201840..203090 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10561.t1.exon1Ggra10561.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 201840..203090 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10561.t1.stop1Ggra10561.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 203088..203090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10561.t1Ggra10561.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 201840..203090 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MSQTPRRSARLCLRDGPAKAASHPDKERKPSKPSTRKVAQPDVEEKLENS
STSGIRASAKGSATSEPQSEGNGRGKRRSRTKSESKSANPTAAKRKKRVK
VADSNIDDNGKANSVDTLPKSIYPEDHTNRSYEIPSGILRVVTWNVASFR
TVFKSGAFQSYLEKENPHILCLQETKMSDEATSGIPTIDGYDIHWNHSRA
KKGYYGVAMFINNNINSLKLKLDRVEHGMGDEVADAEGRVLSLYFSNGLA
IVNSYVPNSGGKLMRLDYRTATFEPKMRHFLNQKAENWNVLYCGDLNVAH
EEIDIHDSKGNKKSAGHTPEERTEFGRLLNSGTGWVDCWRKLYTDYPGYT
YYSRRFGTRLKEAGKGWRLDYHLVDTKTFELGALSDCFVRPNVEGSDHYP
LILDYRISGNSNKSGS*
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spliced messenger RNA

>Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A
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protein sequence of Ggra10561.t1

>Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MSQTPRRSARLCLRDGPAKAASHPDKERKPSKPSTRKVAQPDVEEKLENS
STSGIRASAKGSATSEPQSEGNGRGKRRSRTKSESKSANPTAAKRKKRVK
VADSNIDDNGKANSVDTLPKSIYPEDHTNRSYEIPSGILRVVTWNVASFR
TVFKSGAFQSYLEKENPHILCLQETKMSDEATSGIPTIDGYDIHWNHSRA
KKGYYGVAMFINNNINSLKLKLDRVEHGMGDEVADAEGRVLSLYFSNGLA
IVNSYVPNSGGKLMRLDYRTATFEPKMRHFLNQKAENWNVLYCGDLNVAH
EEIDIHDSKGNKKSAGHTPEERTEFGRLLNSGTGWVDCWRKLYTDYPGYT
YYSRRFGTRLKEAGKGWRLDYHLVDTKTFELGALSDCFVRPNVEGSDHYP
LILDYRISGNSNKSGS*
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mRNA from alignment at tig00000904_pilon:201840..203090+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A
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Coding sequence (CDS) from alignment at tig00000904_pilon:201840..203090+

>Ggra10561.t1 ID=Ggra10561.t1|Name=Ggra10561.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000904_pilon:201840..203090+ (Gracilaria gracilis GNS1m male)
ATGTCTCAAACTCCACGCCGAAGTGCCCGTCTTTGCCTTCGAGATGGGCC
TGCAAAGGCAGCGTCTCACCCTGACAAGGAAAGGAAACCATCGAAACCAA
GCACCAGAAAGGTGGCACAACCAGATGTGGAAGAGAAGCTGGAAAATAGC
AGCACCAGTGGAATCAGAGCCTCAGCCAAAGGATCAGCAACATCTGAACC
ACAGAGCGAGGGTAACGGTCGTGGTAAGAGGCGTAGTAGAACGAAGTCGG
AATCGAAGAGTGCTAATCCCACTGCCGCGAAACGAAAGAAAAGAGTTAAA
GTCGCCGATTCCAACATCGACGATAATGGAAAGGCTAATTCTGTGGACAC
TCTTCCCAAATCTATATATCCTGAAGATCATACAAACAGGTCTTACGAAA
TTCCTTCTGGAATCTTGCGTGTGGTTACCTGGAACGTTGCATCCTTTAGA
ACCGTGTTCAAGTCAGGAGCCTTTCAATCGTATCTGGAAAAGGAAAATCC
ACATATTCTATGCCTTCAAGAAACAAAGATGAGTGACGAAGCCACGAGTG
GAATCCCTACAATTGATGGGTATGACATACACTGGAATCACTCTAGGGCG
AAGAAGGGCTATTATGGGGTCGCGATGTTCATTAATAACAACATCAATTC
CCTGAAATTGAAACTGGACAGAGTGGAGCACGGGATGGGAGACGAGGTTG
CCGATGCCGAAGGTAGAGTACTGTCATTATATTTCAGTAACGGTCTAGCA
ATCGTCAACTCGTACGTTCCAAACTCAGGCGGGAAGCTGATGCGTCTTGA
CTACAGAACCGCTACTTTCGAGCCCAAGATGAGGCACTTTCTTAACCAAA
AGGCGGAGAACTGGAATGTTTTATATTGCGGTGACTTGAATGTTGCTCAT
GAGGAGATTGACATCCACGATAGCAAAGGCAATAAGAAAAGTGCTGGGCA
TACTCCAGAGGAAAGAACAGAATTCGGCCGTTTACTCAACAGTGGGACAG
GTTGGGTGGACTGCTGGAGAAAACTCTACACAGACTACCCGGGATATACT
TACTACTCCCGAAGGTTCGGAACCCGCCTGAAGGAGGCTGGGAAAGGCTG
GCGTTTAGACTATCACCTTGTTGACACCAAAACATTCGAGCTTGGGGCCC
TAAGTGACTGCTTCGTGCGCCCCAATGTAGAAGGCAGTGATCATTACCCC
CTTATTCTAGATTACCGAATATCTGGCAACTCGAACAAGTCCGGTAGTTG
A
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