Ggra10590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10590.t1
Unique Name	Ggra10590.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	779

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:328498..330834 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10590	Ggra10590	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 328498..330834 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10590.t1.stop1	Ggra10590.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 328498..328500 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10590.t1.CDS1	Ggra10590.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 328498..330834 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10590.t1.exon1	Ggra10590.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 328498..330834 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10590.t1.start1	Ggra10590.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 330832..330834 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10590.t1	Ggra10590.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 328498..330834 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:328498..330834-
coding sequence from alignment at tig00000904_pilon:328498..330834-

mRNA sequence

>Ggra10590.t1 ID=Ggra10590.t1|Name=Ggra10590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=779bp
MEDDDYFGHISAPGNEDEEDAANDLTFGDIGDIKAGDDASDAVWKPDHQT
LSRRIEEEKEVVQRSRYASPSSQTTRSDLFENRPPLPRSDQNAAPSDAAW
NRLLKAVQGQRDAQRMGKQHSYPPHPQQLSFSGSPPSDHASQPVTSAQPQ
FPQQPSSLVNPQEYERTMIAYYEQQTRQLLMRHKETAELQLREAIAAQNA
GVVFDRAKFDEHQTAARQRILNEFYTRVNQIRYLAWLQSRQLGQQNAPVP
KQSQNVVRDEQTRAFGFQAPSQERTSENVLRSGLFGNGHAQSSVNRSSSN
PMYASNGNSRVLSALHNKGESNTSRDPRNEAVDVRELERRLLEASIDKAS
EAKHEQNMGNRTSEGRPEPRRHGKKANRLESMTDKDQELVFRVYLRQVES
AVTYKDDYYNGMYRRNEKLGVGELYSDLAKSVNETRLRNRLRGTSGRPYR
SRRLKRSLQSNEKQLPSSSQSNESSMSALATALGSVQTWNPKAPRRVMDF
SSIERKTGKGHESKLLRDDERVKVRHEIERGYDIIAVIHDIVRGESGEVL
EDQIRSLLQTLHIESTDEEPPDSAIVANPGLKFFGTLCVLEKGRRYLARV
LDILDISERIRVIPSVFESLGAMIYSLQRSQRSTLSVNGDIISKSLQTIG
DSHTSALDCITMLSSFSSTHSGRPDAFLTTFRSASGAKLMYCCMQRISRG
LYKKEIDEEDLNRAEIDKLAEVFTEMLQRIFDEAELVNRAWEVTGSLDSI
LAGEARSMLRAELNRLLQSGAAPPPPEG*

spliced messenger RNA

>Ggra10590.t1 ID=Ggra10590.t1|Name=Ggra10590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2337bp|location=Sequence derived from alignment at tig00000904_pilon:328498..330834- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACGACGATTACTTTGGCCACATTTCCGCACCGGGTAATGAAGA
CGAGGAAGACGCAGCTAATGACCTAACGTTTGGAGATATTGGGGACATCA
AGGCTGGTGATGATGCTTCTGATGCGGTGTGGAAACCGGATCATCAAACC
CTTTCTCGAAGAATTGAGGAGGAGAAAGAGGTTGTGCAAAGATCCCGATA
TGCATCACCGTCCTCTCAGACTACACGAAGCGATCTGTTTGAAAACCGTC
CCCCCCTGCCGCGAAGTGACCAGAACGCAGCGCCATCGGACGCGGCGTGG
AATCGTCTGCTAAAAGCTGTACAAGGACAACGAGATGCACAGCGAATGGG
CAAGCAGCACTCTTACCCTCCCCACCCTCAACAACTCTCTTTTTCAGGTT
CTCCTCCCAGCGACCATGCCTCGCAGCCAGTAACAAGTGCTCAACCGCAA
TTTCCCCAACAACCGTCTTCATTAGTGAATCCTCAGGAATACGAACGAAC
AATGATTGCGTACTATGAACAACAAACACGGCAGTTGTTAATGCGCCACA
AGGAAACGGCGGAGCTTCAACTAAGAGAAGCAATTGCAGCACAGAATGCT
GGCGTTGTATTTGACAGAGCCAAGTTTGATGAACATCAAACCGCTGCGCG
CCAACGGATACTCAATGAGTTTTATACTCGTGTCAATCAGATTCGCTACC
TTGCCTGGCTTCAATCGCGTCAGCTTGGACAGCAAAACGCGCCTGTTCCG
AAACAAAGCCAAAATGTTGTGCGTGATGAACAGACGCGTGCGTTTGGTTT
TCAAGCACCAAGTCAGGAGCGCACATCAGAAAATGTGCTCAGATCTGGTC
TGTTTGGCAATGGTCACGCACAATCTTCCGTAAATCGTTCTAGCTCAAAT
CCCATGTATGCTTCAAATGGAAATTCACGGGTTCTTTCTGCGCTTCACAA
CAAGGGGGAATCCAATACTTCACGTGATCCAAGAAATGAAGCAGTGGATG
TGCGGGAGTTGGAACGCCGCTTATTGGAAGCAAGTATAGATAAGGCTTCG
GAGGCGAAACATGAACAAAACATGGGCAACAGAACCTCCGAAGGAAGACC
AGAACCTAGAAGGCATGGGAAAAAAGCAAACCGTCTGGAGTCAATGACCG
ACAAAGACCAGGAGTTGGTCTTCAGGGTGTATTTGAGGCAGGTAGAATCG
GCAGTTACGTATAAGGATGATTACTATAATGGTATGTATCGGAGGAATGA
GAAGCTTGGGGTAGGGGAATTATATTCGGATCTTGCGAAAAGCGTTAATG
AAACGAGACTAAGAAATCGATTGCGCGGGACCAGTGGTCGCCCGTACAGA
AGTCGCCGATTGAAGCGTTCCCTGCAGTCTAATGAAAAGCAGCTACCCTC
ATCTTCACAGTCAAATGAGTCTTCCATGAGCGCTCTAGCGACTGCACTCG
GTTCAGTTCAAACATGGAACCCTAAGGCCCCAAGAAGGGTTATGGACTTC
AGCTCGATTGAACGCAAAACTGGTAAAGGACATGAATCCAAGCTGCTTCG
GGACGACGAGAGAGTGAAAGTAAGACATGAGATTGAGAGAGGTTATGATA
TCATAGCTGTGATTCACGACATTGTCAGAGGAGAAAGCGGCGAAGTGTTG
GAAGACCAAATTCGTAGTCTTCTTCAAACACTACATATCGAAAGCACGGA
TGAAGAACCGCCTGATTCTGCGATCGTTGCAAACCCGGGGCTCAAATTCT
TTGGCACGCTTTGCGTGTTGGAGAAGGGCAGAAGATATCTGGCAAGAGTC
TTAGACATTCTTGACATATCTGAGCGAATTCGGGTTATTCCTTCGGTGTT
CGAAAGCTTAGGGGCCATGATATATTCTCTCCAACGCTCTCAACGTTCCA
CGTTGTCCGTGAACGGCGATATCATATCCAAGTCGCTTCAGACGATAGGC
GACTCGCACACGTCAGCGTTGGATTGCATAACAATGCTGTCTTCATTCAG
CTCAACTCATTCTGGTCGTCCTGATGCCTTTCTGACCACTTTTCGAAGCG
CTTCTGGTGCTAAGCTCATGTACTGTTGCATGCAAAGGATATCCAGGGGT
TTGTATAAAAAGGAAATAGATGAAGAGGATCTAAATCGAGCTGAAATCGA
TAAGCTCGCGGAAGTATTTACTGAAATGCTACAACGCATATTTGATGAGG
CAGAACTTGTTAACAGAGCGTGGGAAGTGACTGGAAGTCTCGACAGTATT
CTAGCTGGCGAAGCGAGATCAATGCTTCGTGCAGAGCTCAATCGACTGTT
GCAAAGTGGTGCAGCTCCCCCACCCCCAGAAGGATAG

protein sequence of Ggra10590.t1

>Ggra10590.t1 ID=Ggra10590.t1|Name=Ggra10590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=779bp
MEDDDYFGHISAPGNEDEEDAANDLTFGDIGDIKAGDDASDAVWKPDHQT
LSRRIEEEKEVVQRSRYASPSSQTTRSDLFENRPPLPRSDQNAAPSDAAW
NRLLKAVQGQRDAQRMGKQHSYPPHPQQLSFSGSPPSDHASQPVTSAQPQ
FPQQPSSLVNPQEYERTMIAYYEQQTRQLLMRHKETAELQLREAIAAQNA
GVVFDRAKFDEHQTAARQRILNEFYTRVNQIRYLAWLQSRQLGQQNAPVP
KQSQNVVRDEQTRAFGFQAPSQERTSENVLRSGLFGNGHAQSSVNRSSSN
PMYASNGNSRVLSALHNKGESNTSRDPRNEAVDVRELERRLLEASIDKAS
EAKHEQNMGNRTSEGRPEPRRHGKKANRLESMTDKDQELVFRVYLRQVES
AVTYKDDYYNGMYRRNEKLGVGELYSDLAKSVNETRLRNRLRGTSGRPYR
SRRLKRSLQSNEKQLPSSSQSNESSMSALATALGSVQTWNPKAPRRVMDF
SSIERKTGKGHESKLLRDDERVKVRHEIERGYDIIAVIHDIVRGESGEVL
EDQIRSLLQTLHIESTDEEPPDSAIVANPGLKFFGTLCVLEKGRRYLARV
LDILDISERIRVIPSVFESLGAMIYSLQRSQRSTLSVNGDIISKSLQTIG
DSHTSALDCITMLSSFSSTHSGRPDAFLTTFRSASGAKLMYCCMQRISRG
LYKKEIDEEDLNRAEIDKLAEVFTEMLQRIFDEAELVNRAWEVTGSLDSI
LAGEARSMLRAELNRLLQSGAAPPPPEG*

mRNA from alignment at tig00000904_pilon:328498..330834-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10590.t1 ID=Ggra10590.t1|Name=Ggra10590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2337bp|location=Sequence derived from alignment at tig00000904_pilon:328498..330834- (Gracilaria gracilis GNS1m male)
ATGGAAGACGACGATTACTTTGGCCACATTTCCGCACCGGGTAATGAAGA
CGAGGAAGACGCAGCTAATGACCTAACGTTTGGAGATATTGGGGACATCA
AGGCTGGTGATGATGCTTCTGATGCGGTGTGGAAACCGGATCATCAAACC
CTTTCTCGAAGAATTGAGGAGGAGAAAGAGGTTGTGCAAAGATCCCGATA
TGCATCACCGTCCTCTCAGACTACACGAAGCGATCTGTTTGAAAACCGTC
CCCCCCTGCCGCGAAGTGACCAGAACGCAGCGCCATCGGACGCGGCGTGG
AATCGTCTGCTAAAAGCTGTACAAGGACAACGAGATGCACAGCGAATGGG
CAAGCAGCACTCTTACCCTCCCCACCCTCAACAACTCTCTTTTTCAGGTT
CTCCTCCCAGCGACCATGCCTCGCAGCCAGTAACAAGTGCTCAACCGCAA
TTTCCCCAACAACCGTCTTCATTAGTGAATCCTCAGGAATACGAACGAAC
AATGATTGCGTACTATGAACAACAAACACGGCAGTTGTTAATGCGCCACA
AGGAAACGGCGGAGCTTCAACTAAGAGAAGCAATTGCAGCACAGAATGCT
GGCGTTGTATTTGACAGAGCCAAGTTTGATGAACATCAAACCGCTGCGCG
CCAACGGATACTCAATGAGTTTTATACTCGTGTCAATCAGATTCGCTACC
TTGCCTGGCTTCAATCGCGTCAGCTTGGACAGCAAAACGCGCCTGTTCCG
AAACAAAGCCAAAATGTTGTGCGTGATGAACAGACGCGTGCGTTTGGTTT
TCAAGCACCAAGTCAGGAGCGCACATCAGAAAATGTGCTCAGATCTGGTC
TGTTTGGCAATGGTCACGCACAATCTTCCGTAAATCGTTCTAGCTCAAAT
CCCATGTATGCTTCAAATGGAAATTCACGGGTTCTTTCTGCGCTTCACAA
CAAGGGGGAATCCAATACTTCACGTGATCCAAGAAATGAAGCAGTGGATG
TGCGGGAGTTGGAACGCCGCTTATTGGAAGCAAGTATAGATAAGGCTTCG
GAGGCGAAACATGAACAAAACATGGGCAACAGAACCTCCGAAGGAAGACC
AGAACCTAGAAGGCATGGGAAAAAAGCAAACCGTCTGGAGTCAATGACCG
ACAAAGACCAGGAGTTGGTCTTCAGGGTGTATTTGAGGCAGGTAGAATCG
GCAGTTACGTATAAGGATGATTACTATAATGGTATGTATCGGAGGAATGA
GAAGCTTGGGGTAGGGGAATTATATTCGGATCTTGCGAAAAGCGTTAATG
AAACGAGACTAAGAAATCGATTGCGCGGGACCAGTGGTCGCCCGTACAGA
AGTCGCCGATTGAAGCGTTCCCTGCAGTCTAATGAAAAGCAGCTACCCTC
ATCTTCACAGTCAAATGAGTCTTCCATGAGCGCTCTAGCGACTGCACTCG
GTTCAGTTCAAACATGGAACCCTAAGGCCCCAAGAAGGGTTATGGACTTC
AGCTCGATTGAACGCAAAACTGGTAAAGGACATGAATCCAAGCTGCTTCG
GGACGACGAGAGAGTGAAAGTAAGACATGAGATTGAGAGAGGTTATGATA
TCATAGCTGTGATTCACGACATTGTCAGAGGAGAAAGCGGCGAAGTGTTG
GAAGACCAAATTCGTAGTCTTCTTCAAACACTACATATCGAAAGCACGGA
TGAAGAACCGCCTGATTCTGCGATCGTTGCAAACCCGGGGCTCAAATTCT
TTGGCACGCTTTGCGTGTTGGAGAAGGGCAGAAGATATCTGGCAAGAGTC
TTAGACATTCTTGACATATCTGAGCGAATTCGGGTTATTCCTTCGGTGTT
CGAAAGCTTAGGGGCCATGATATATTCTCTCCAACGCTCTCAACGTTCCA
CGTTGTCCGTGAACGGCGATATCATATCCAAGTCGCTTCAGACGATAGGC
GACTCGCACACGTCAGCGTTGGATTGCATAACAATGCTGTCTTCATTCAG
CTCAACTCATTCTGGTCGTCCTGATGCCTTTCTGACCACTTTTCGAAGCG
CTTCTGGTGCTAAGCTCATGTACTGTTGCATGCAAAGGATATCCAGGGGT
TTGTATAAAAAGGAAATAGATGAAGAGGATCTAAATCGAGCTGAAATCGA
TAAGCTCGCGGAAGTATTTACTGAAATGCTACAACGCATATTTGATGAGG
CAGAACTTGTTAACAGAGCGTGGGAAGTGACTGGAAGTCTCGACAGTATT
CTAGCTGGCGAAGCGAGATCAATGCTTCGTGCAGAGCTCAATCGACTGTT
GCAAAGTGGTGCAGCTCCCCCACCCCCAGAAGGATAG

Coding sequence (CDS) from alignment at tig00000904_pilon:328498..330834-

>Ggra10590.t1 ID=Ggra10590.t1|Name=Ggra10590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2337bp|location=Sequence derived from alignment at tig00000904_pilon:328498..330834- (Gracilaria gracilis GNS1m male)
ATGGAAGACGACGATTACTTTGGCCACATTTCCGCACCGGGTAATGAAGA
CGAGGAAGACGCAGCTAATGACCTAACGTTTGGAGATATTGGGGACATCA
AGGCTGGTGATGATGCTTCTGATGCGGTGTGGAAACCGGATCATCAAACC
CTTTCTCGAAGAATTGAGGAGGAGAAAGAGGTTGTGCAAAGATCCCGATA
TGCATCACCGTCCTCTCAGACTACACGAAGCGATCTGTTTGAAAACCGTC
CCCCCCTGCCGCGAAGTGACCAGAACGCAGCGCCATCGGACGCGGCGTGG
AATCGTCTGCTAAAAGCTGTACAAGGACAACGAGATGCACAGCGAATGGG
CAAGCAGCACTCTTACCCTCCCCACCCTCAACAACTCTCTTTTTCAGGTT
CTCCTCCCAGCGACCATGCCTCGCAGCCAGTAACAAGTGCTCAACCGCAA
TTTCCCCAACAACCGTCTTCATTAGTGAATCCTCAGGAATACGAACGAAC
AATGATTGCGTACTATGAACAACAAACACGGCAGTTGTTAATGCGCCACA
AGGAAACGGCGGAGCTTCAACTAAGAGAAGCAATTGCAGCACAGAATGCT
GGCGTTGTATTTGACAGAGCCAAGTTTGATGAACATCAAACCGCTGCGCG
CCAACGGATACTCAATGAGTTTTATACTCGTGTCAATCAGATTCGCTACC
TTGCCTGGCTTCAATCGCGTCAGCTTGGACAGCAAAACGCGCCTGTTCCG
AAACAAAGCCAAAATGTTGTGCGTGATGAACAGACGCGTGCGTTTGGTTT
TCAAGCACCAAGTCAGGAGCGCACATCAGAAAATGTGCTCAGATCTGGTC
TGTTTGGCAATGGTCACGCACAATCTTCCGTAAATCGTTCTAGCTCAAAT
CCCATGTATGCTTCAAATGGAAATTCACGGGTTCTTTCTGCGCTTCACAA
CAAGGGGGAATCCAATACTTCACGTGATCCAAGAAATGAAGCAGTGGATG
TGCGGGAGTTGGAACGCCGCTTATTGGAAGCAAGTATAGATAAGGCTTCG
GAGGCGAAACATGAACAAAACATGGGCAACAGAACCTCCGAAGGAAGACC
AGAACCTAGAAGGCATGGGAAAAAAGCAAACCGTCTGGAGTCAATGACCG
ACAAAGACCAGGAGTTGGTCTTCAGGGTGTATTTGAGGCAGGTAGAATCG
GCAGTTACGTATAAGGATGATTACTATAATGGTATGTATCGGAGGAATGA
GAAGCTTGGGGTAGGGGAATTATATTCGGATCTTGCGAAAAGCGTTAATG
AAACGAGACTAAGAAATCGATTGCGCGGGACCAGTGGTCGCCCGTACAGA
AGTCGCCGATTGAAGCGTTCCCTGCAGTCTAATGAAAAGCAGCTACCCTC
ATCTTCACAGTCAAATGAGTCTTCCATGAGCGCTCTAGCGACTGCACTCG
GTTCAGTTCAAACATGGAACCCTAAGGCCCCAAGAAGGGTTATGGACTTC
AGCTCGATTGAACGCAAAACTGGTAAAGGACATGAATCCAAGCTGCTTCG
GGACGACGAGAGAGTGAAAGTAAGACATGAGATTGAGAGAGGTTATGATA
TCATAGCTGTGATTCACGACATTGTCAGAGGAGAAAGCGGCGAAGTGTTG
GAAGACCAAATTCGTAGTCTTCTTCAAACACTACATATCGAAAGCACGGA
TGAAGAACCGCCTGATTCTGCGATCGTTGCAAACCCGGGGCTCAAATTCT
TTGGCACGCTTTGCGTGTTGGAGAAGGGCAGAAGATATCTGGCAAGAGTC
TTAGACATTCTTGACATATCTGAGCGAATTCGGGTTATTCCTTCGGTGTT
CGAAAGCTTAGGGGCCATGATATATTCTCTCCAACGCTCTCAACGTTCCA
CGTTGTCCGTGAACGGCGATATCATATCCAAGTCGCTTCAGACGATAGGC
GACTCGCACACGTCAGCGTTGGATTGCATAACAATGCTGTCTTCATTCAG
CTCAACTCATTCTGGTCGTCCTGATGCCTTTCTGACCACTTTTCGAAGCG
CTTCTGGTGCTAAGCTCATGTACTGTTGCATGCAAAGGATATCCAGGGGT
TTGTATAAAAAGGAAATAGATGAAGAGGATCTAAATCGAGCTGAAATCGA
TAAGCTCGCGGAAGTATTTACTGAAATGCTACAACGCATATTTGATGAGG
CAGAACTTGTTAACAGAGCGTGGGAAGTGACTGGAAGTCTCGACAGTATT
CTAGCTGGCGAAGCGAGATCAATGCTTCGTGCAGAGCTCAATCGACTGTT
GCAAAGTGGTGCAGCTCCCCCACCCCCAGAAGGATAG