Ggra10570.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10570.t1
Unique NameGgra10570.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:283220..284365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006411746.1
PFAMsMito_carr
Max annot lvl35493|Streptophyta
KEGG koko:K15111
KEGG TC2.A.29.18
GOsGO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006855,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0072348,GO:1901682,GO:1901962
Evalue4.25e-54
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota,37KH0@33090|Viridiplantae,3G7KW@35493|Streptophyta,3HZFI@3699|Brassicales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10570Ggra10570Gracilaria gracilis GNS1m malegenetig00000904_pilon 283220..284365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1Ggra10570.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 283220..284365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1.stop1Ggra10570.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 283220..283222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1.CDS1Ggra10570.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 283220..283498 -
Ggra10570.t1.CDS2Ggra10570.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 283568..283983 -
Ggra10570.t1.CDS3Ggra10570.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 284059..284365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1.exon1Ggra10570.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 283220..283498 -
Ggra10570.t1.exon2Ggra10570.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 283568..283983 -
Ggra10570.t1.exon3Ggra10570.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 284059..284365 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1.intron1Ggra10570.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 283499..283567 -
Ggra10570.t1.intron2Ggra10570.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 283984..284058 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10570.t1.start1Ggra10570.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 284363..284365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MASKTSANLLLCDSSRRASVSSRRNVLTHHSDAQLASTFAGVTSRILLHP
VDCVKTRLQYIRTRPGSNEASRHLIRFIASEGLPGLYRGIIGALAGVLPY
SMLYMPSYELAQMQLSRLAHDKLLGVRHVVAGSFAGLCGSLVKVPVDVVK
KRLQAGIYPHIGAAVTSIASEGSGFAGGFRQFYTGWRSSIIYDVPYSAIQ
FTVLENVKRCVRRLKRRELVGVDHVLVGALTGMITSVVTEPLDVIKTRLM
TQRMKGGRPAITMYRGWLHCMRTIVQEEGPLALWKGTLPRLIWVGASSAI
WYGTYQAVRQSMNQKRQLAAKSESDVSGSQGVK*
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spliced messenger RNA

>Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCTATATATGCCGAGTTACGAGCTCGCTCAGATGCAGCTTTCGCG
TCTTGCTCACGACAAGCTACTTGGTGTTCGCCATGTCGTTGCCGGTTCAT
TTGCCGGTCTTTGTGGTTCGTTGGTCAAGGTACCCGTTGATGTGGTCAAA
AAACGCTTGCAAGCCGGCATTTATCCCCATATAGGTGCTGCTGTCACGTC
TATTGCTTCCGAAGGCAGCGGCTTCGCGGGCGGATTTCGTCAGTTCTACA
CTGGTTGGCGAAGCTCCATTATATATGATGTACCATACAGCGCTATCCAG
TTTACCGTACTTGAGAATGTTAAGCGGTGCGTGAGACGCCTGAAAAGGAG
GGAACTGGTCGGAGTGGACCATGTACTCGTCGGTGCGCTAACCGGAATGA
TAACATCTGTTGTAACTGAGCCACTTGATGTAATCAAGACCAGATTAATG
ACACAACGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTG
GCTTCATTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTAT
GGAAAGGAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATT
TGGTATGGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCA
ATTGGCGGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAAT
GA
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protein sequence of Ggra10570.t1

>Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MASKTSANLLLCDSSRRASVSSRRNVLTHHSDAQLASTFAGVTSRILLHP
VDCVKTRLQYIRTRPGSNEASRHLIRFIASEGLPGLYRGIIGALAGVLPY
SMLYMPSYELAQMQLSRLAHDKLLGVRHVVAGSFAGLCGSLVKVPVDVVK
KRLQAGIYPHIGAAVTSIASEGSGFAGGFRQFYTGWRSSIIYDVPYSAIQ
FTVLENVKRCVRRLKRRELVGVDHVLVGALTGMITSVVTEPLDVIKTRLM
TQRMKGGRPAITMYRGWLHCMRTIVQEEGPLALWKGTLPRLIWVGASSAI
WYGTYQAVRQSMNQKRQLAAKSESDVSGSQGVK*
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mRNA from alignment at tig00000904_pilon:283220..284365-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCGTGCGTTTTTTCTACCCCTACCCGCCTCACTCTCGCTTCTCGT
TCCGCCTCACTAACATACCTGCCCGTTTATAGTATATATGCCGAGTTACG
AGCTCGCTCAGATGCAGCTTTCGCGTCTTGCTCACGACAAGCTACTTGGT
GTTCGCCATGTCGTTGCCGGTTCATTTGCCGGTCTTTGTGGTTCGTTGGT
CAAGGTACCCGTTGATGTGGTCAAAAAACGCTTGCAAGCCGGCATTTATC
CCCATATAGGTGCTGCTGTCACGTCTATTGCTTCCGAAGGCAGCGGCTTC
GCGGGCGGATTTCGTCAGTTCTACACTGGTTGGCGAAGCTCCATTATATA
TGATGTACCATACAGCGCTATCCAGTTTACCGTACTTGAGAATGTTAAGC
GGTGCGTGAGACGCCTGAAAAGGAGGGAACTGGTCGGAGTGGACCATGTA
CTCGTCGGTGCGCTAACCGGAATGATAACATCTGTTGTAACTGAGCCAGT
AAGTTGTTCCTAACACCCTTCCATGTTTAGACTAGATGCCATTCTAACTC
ACCGTTTGCAAACCTAGCTTGATGTAATCAAGACCAGATTAATGACACAA
CGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTGGCTTCA
TTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTATGGAAAG
GAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATTTGGTAT
GGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCAATTGGC
GGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAATGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:283220..284365-

>Ggra10570.t1 ID=Ggra10570.t1|Name=Ggra10570.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000904_pilon:283220..284365- (Gracilaria gracilis GNS1m male)
ATGGCCAGCAAAACCTCTGCTAACCTCCTTCTGTGTGACAGCTCGAGGCG
CGCGTCTGTATCGAGCCGGCGAAATGTTCTTACACACCACTCCGATGCGC
AACTGGCTTCTACCTTTGCCGGCGTCACCAGTCGAATTCTTCTGCACCCC
GTCGATTGCGTCAAAACCAGGTTGCAGTACATTCGTACCCGCCCCGGTTC
TAACGAGGCCTCGAGACACTTGATCCGCTTCATTGCATCCGAGGGACTAC
CGGGCCTTTATCGTGGCATTATTGGCGCACTGGCAGGAGTGCTGCCCTAT
TCGATGCTATATATGCCGAGTTACGAGCTCGCTCAGATGCAGCTTTCGCG
TCTTGCTCACGACAAGCTACTTGGTGTTCGCCATGTCGTTGCCGGTTCAT
TTGCCGGTCTTTGTGGTTCGTTGGTCAAGGTACCCGTTGATGTGGTCAAA
AAACGCTTGCAAGCCGGCATTTATCCCCATATAGGTGCTGCTGTCACGTC
TATTGCTTCCGAAGGCAGCGGCTTCGCGGGCGGATTTCGTCAGTTCTACA
CTGGTTGGCGAAGCTCCATTATATATGATGTACCATACAGCGCTATCCAG
TTTACCGTACTTGAGAATGTTAAGCGGTGCGTGAGACGCCTGAAAAGGAG
GGAACTGGTCGGAGTGGACCATGTACTCGTCGGTGCGCTAACCGGAATGA
TAACATCTGTTGTAACTGAGCCACTTGATGTAATCAAGACCAGATTAATG
ACACAACGAATGAAAGGCGGTCGGCCTGCAATAACAATGTACCGCGGGTG
GCTTCATTGTATGCGGACAATTGTACAAGAAGAAGGTCCATTGGCTTTAT
GGAAAGGAACATTGCCTCGCCTTATTTGGGTTGGCGCAAGTAGCGCAATT
TGGTATGGCACTTATCAGGCAGTTCGCCAATCTATGAACCAAAAGAGGCA
ATTGGCGGCAAAGAGTGAAAGCGATGTTTCTGGTTCTCAAGGGGTGAAAT
GA
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