Ggra2150.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2150.t1
Unique Name	Ggra2150.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:435547..439085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703846.1
Max annot lvl	2759\|Eukaryota
Evalue	2.93e-35
EggNOG OGs	28PB3@1\|root,2QVYF@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2150	Ggra2150	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 435547..439085 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1	Ggra2150.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 435547..439085 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1.start1	Ggra2150.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 435547..435549 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1.CDS1	Ggra2150.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 435547..435735 +
Ggra2150.t1.CDS2	Ggra2150.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 437973..439085 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1.exon1	Ggra2150.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 435547..435735 +
Ggra2150.t1.exon2	Ggra2150.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 437973..439085 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1.intron1	Ggra2150.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 435736..437972 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2150.t1.stop1	Ggra2150.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 439083..439085 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:435547..439085+
coding sequence from alignment at tig00000900_pilon:435547..439085+

mRNA sequence

>Ggra2150.t1 ID=Ggra2150.t1|Name=Ggra2150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MASGWAHFRKVWLKPEVYPLIGAMGAALGVMAASLVNKARSPTVAWNKSK
RGTGTLFDDVDEVASRLAATRDGAFVFASGSQLFSVPCSPALFRKRARSE
RDGEQQRAARDVVTSAYADDYLTASAFSRVGAHRLAIHSTHRAEIQSVSA
DGGTIASVDAFGRCIVTVDQQPPPPASAHKHNNTRCYVLAPPSLAGGDGG
WCGVALRANDASAIVVSRQMYRDVTLFDADTAVRSFATIVAPQAATFCAA
HAQLIGVAERKDLSLFDARVGENQGCVARSSVAHGKLLCMDASQDGSLIA
TAGMDRVLHMFDVRMMCVRQRWASCLKYEVAGALLSRSMHGMAYVCSVDN
EVACGAWSEQMARHVKTQLAASSSSSCKSVMISGANTRSARRAFGFRADV
RVVGLARRNVDDGEQVAALSESGALYVLRARAE*

spliced messenger RNA

>Ggra2150.t1 ID=Ggra2150.t1|Name=Ggra2150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000900_pilon:435547..439085+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTGGATGGGCGCATTTCCGCAAGGTTTGGCTCAAGCCCGAAGT
GTACCCTCTAATTGGCGCCATGGGCGCTGCGCTCGGCGTCATGGCCGCGT
CGCTTGTCAACAAGGCGCGTAGTCCTACTGTCGCATGGAACAAGAGCAAA
CGGGGGACGGGCACGCTTTTCGACGACGTCGATGAGGTTgcgtcgcgcct
ggccgccacgcgcgacggcgccTTCGTGTTCGCCTCCGGCTCGCAGCTGT
TCAGCGTGCCGTGCTCGCCCGCTCTGTTTCGCAAGCGCGCGCGGAGTGAG
CGCGACGGCGAGCAACAGCGCGCTGCACGCGACGTCGTGACCAGTGCGTA
CGCGGACGATTACTTGACTGCCAGCGCCTTTTCGCGAGTTGGCGCGCACA
GACTGGCCATCCACAGCACGCACCGCGCCGAGATTCAGTCCGTGAGTGCG
GACGGCGGCACCATTGCGTCGGTGGATGCGTTTGGCAGATGTATAGTTAC
GGTTGATCAACAGCCGCCGCCGCCAGCGTCGGCGCACAAACACAACAACA
CGCGCTGCTACGTGCTGGCGCCGCCGTCGCTGGCGGGCGGCGACGGCGGC
TGGTGCGGCGTTGCGCTGCGTGCAAACGACGCGTCCGCCATCGTGGTGAG
CAGACAGATGTACCGCGACGTGACGCTGTTCGATGCGGACACGGCGGTGC
GCTCGTTCGCCACCATTGTTGCTCCGCAGGCGGCCACATTCTGCGCGGCG
CATGCGCAGCTGATTGGCGTTGCGGAGCGCAAGGACTTGTCACTGTTCGA
CGCgcgcgtgggcgagaatcaaggctgcgtggcgcggagcagcgtggcgc
ACGGAAAGCTGCTTTGCATGGATGCTTCTCAGGACGGCTCGCTGATCGCC
ACGGCGGGCATGGATCGCGTGCTGCACATGTTCGACGTGCGCATGATGTG
CGTGAGGCAGCGCTGGGCGTCGTGCCTCAAGTACGAGGTGGCGGGCGCGC
TGCTGAGCCGTAGCATGCACGGCATGGCGTATGTGTGCAGCGTGGATAAC
GAGGTGGCGTGCGGCGCGTGGAGCGAGCAGATGGCGCGCCACGTGAAGAC
GCAGCTTGCGGCGTCATCATCATCGTCATGCAAATCGGTGATGATCTCTG
GCGCCAACACCAGGAGCGCGCGGCGCGCGTTCGGCTTCAGAGCGGACGTG
CGCGTGGTAGGACTAGCACGACGCAACGTCGACGACGGCGAGCAGGTGGC
GGCGTTGAGCGAAAGCGGCGCGCTGTACGTGCTACGTGCGCGCGCGGAAT
GA

protein sequence of Ggra2150.t1

>Ggra2150.t1 ID=Ggra2150.t1|Name=Ggra2150.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MASGWAHFRKVWLKPEVYPLIGAMGAALGVMAASLVNKARSPTVAWNKSK
RGTGTLFDDVDEVASRLAATRDGAFVFASGSQLFSVPCSPALFRKRARSE
RDGEQQRAARDVVTSAYADDYLTASAFSRVGAHRLAIHSTHRAEIQSVSA
DGGTIASVDAFGRCIVTVDQQPPPPASAHKHNNTRCYVLAPPSLAGGDGG
WCGVALRANDASAIVVSRQMYRDVTLFDADTAVRSFATIVAPQAATFCAA
HAQLIGVAERKDLSLFDARVGENQGCVARSSVAHGKLLCMDASQDGSLIA
TAGMDRVLHMFDVRMMCVRQRWASCLKYEVAGALLSRSMHGMAYVCSVDN
EVACGAWSEQMARHVKTQLAASSSSSCKSVMISGANTRSARRAFGFRADV
RVVGLARRNVDDGEQVAALSESGALYVLRARAE*

mRNA from alignment at tig00000900_pilon:435547..439085+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2150.t1 ID=Ggra2150.t1|Name=Ggra2150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3539bp|location=Sequence derived from alignment at tig00000900_pilon:435547..439085+ (Gracilaria gracilis GNS1m male)
ATGGCCTCTGGATGGGCGCATTTCCGCAAGGTTTGGCTCAAGCCCGAAGT
GTACCCTCTAATTGGCGCCATGGGCGCTGCGCTCGGCGTCATGGCCGCGT
CGCTTGTCAACAAGGCGCGTAGTCCTACTGTCGCATGGAACAAGAGCAAA
CGGGGGACGGGCACGCTTTTCGACGACGTCGATGAGGTTGTGCCTCTTTG
GGCTGATTCGAAGAagaattctattagcattttcggttccgattctacca
ttactgactccaaggcgctgggaaaggacgaccttggaacttttgttgtc
aaggccgccgcggaggaggaggaggaggaggaggaggaggaggaggggga
ggaggagcaacaggagcaacaagaggcagcggttgaagaacagccagcag
agcccgaagcgccagcagcagcggaagagctgcccgttgtgcAGCCCGTT
CTCGACGTGATTGACGAAAGCGCTGAAGCCATTAATGCCGCCGTAGACGC
CGCAATTGAAAGCGCCGACACCACTTCTGACGCTCCAGCTGCCCCTGCGT
CAGCCGTGGAAGCGCCAGTAGCGGAAGTGGCTGTCGAAAAGGCTCCAGTT
GAGCAGCCATAAGCAGCTGAATGTTGGTGTGCTGTTTTGGTCAGCGCTCT
GCTAGCTCTTGTGGGGCTCCAAGCAGTTTCTACTAAAAGCCACACTTGTG
ACTTGTGTAACCGCTGACATCCATTGCGCGCCGACTTGCACTGTTGTTGT
GCATGTGCGCTTGTTGATTCCAGCTGTCTGTGCTCTATTGCCATGTTAGA
GTTAGTATGTTTTATGTACTCATCACCATGGTGCATGCTCGAGTTGATGG
CGGTGCTGTTTTAACTTCAACTGCAGCGCGCATGAGTACAAAGGTAAACC
CGTTTGTTCCATGAAAGTGCTTTGATGGAATTGCCGCTTAGCTCCATGAT
GAAACAAGAAAACGGTGGAGCGCAGCAACGGTGCTTTTTGACGGCGGTAA
CAAGGAGCGATAACACAAATGTGTTTGAGCTGTTGCGTTGATGGCGTGAG
CGTTATTCCGTCATACGGGAGGTAGTTTCGAGCAAGATATGGGTTTCTTG
GCTTTGGCACCAAACACACAGCGTGAGCGCTGATGAAAGTAGTGTGGCTC
ATTAACGTTCTTACTTGAGCTGTTGATGTGAGATGATTCGGCGAAGTGTT
GCTCTTCTGCGTGGGTGCTGTTGGTGAATTTGGGCACATGCTTGGCAAGG
ACATAGGCAAGGTTCGTTAGCGTGCATTTACACTTTTGCAAAGTGATTAC
GCGAACGGCTGAAGTTTAGAATTCGAACGTGTCGAAGAGAGGCAACTTAT
CTCGGCTGAACAGTATCCATAGATACGGAAAGCGTGGACAAGAGCAAAAA
AAAGCAGCCAGACGACACGTGCTGAAATGGTGAGGGCCATTGAAGCAAGA
GTTCAACACGACTTgcgagtgcgcgcgtgcgcgcgagcgcgcgATGGAAG
CGAGATGGAAAGCGTATTCCATCCGATGCGGCGACTGTCTAAACGTGCAG
CTGTTCGGCTGATGTTGATGTGAACATACACGGAGGCGTCCTTGATGATG
CCTTTGATGCGAATTGTGACAGGCGGGTGCTGACGAGAGCTGCTGCGCTG
TGTTTTCTACGAGGCAGCCGGTTCCAACAGCTACCTCTGTAGGTTATGAA
TCGTTGCGATGACATGTGTCTCGAGATTTGTTTCTGTGTTTTATGGGGAG
AGCTGAGCTTCAAGCTGCGGCTGACGGGGTGCTGTTGTGCTCCACCGTTG
CGGCAAACGGCTTGTTAAGGCTGAACAGTAGAGATAAAGGTTAACCCTTT
ACCCTTGTACCGCACACGAGTCATGTAAAATCTGCTCAAGTGGAACTTGT
TTGACTACTACTGTAGTATCCTATCTAGAGCTAGATAAGGTTACTCCAAG
TGGGACGCAATCTGCGCATGGAGACATTTCGTTTGTGAATGCCTTGATTT
TTTTGCGCGTCGAGCTGCAGCTGCACGGCGTCGTccctctcccccccccc
ccccccccccgggcgccctcccccGGCGGCGCAGCGCGCTGCGCGCCGCG
ATTTGATTCAGCCCAACGGGTGTAGCAACGGGTGTAGCACAACGGGCGCT
CGACGAATCGATTGGCGCGACGCACAATCTCGCGCCGTCAAGCGCAGCGA
CTGGTGAGCCACCGCCGCGGTGCCGCACACGTCAAAACATCTCAGCGCCA
GCCGAGCGCGCCCCGCCGCTGCTGCCGCCCCCCCTCTCATGCAGATTTGG
TCAGCGCGTGCCGAgccgccgctcccgccgcacgcgccgctcgcgcgccg
ccagctgcttcgcgccgcgctgcacgacgacggccacggcgccgtgcggc
tgccgctctcgcccgccgcgccgcaggcgtcgcgcctggccgccacgcgc
gacggcgccTTCGTGTTCGCCTCCGGCTCGCAGCTGTTCAGCGTGCCGTG
CTCGCCCGCTCTGTTTCGCAAGCGCGCGCGGAGTGAGCGCGACGGCGAGC
AACAGCGCGCTGCACGCGACGTCGTGACCAGTGCGTACGCGGACGATTAC
TTGACTGCCAGCGCCTTTTCGCGAGTTGGCGCGCACAGACTGGCCATCCA
CAGCACGCACCGCGCCGAGATTCAGTCCGTGAGTGCGGACGGCGGCACCA
TTGCGTCGGTGGATGCGTTTGGCAGATGTATAGTTACGGTTGATCAACAG
CCGCCGCCGCCAGCGTCGGCGCACAAACACAACAACACGCGCTGCTACGT
GCTGGCGCCGCCGTCGCTGGCGGGCGGCGACGGCGGCTGGTGCGGCGTTG
CGCTGCGTGCAAACGACGCGTCCGCCATCGTGGTGAGCAGACAGATGTAC
CGCGACGTGACGCTGTTCGATGCGGACACGGCGGTGCGCTCGTTCGCCAC
CATTGTTGCTCCGCAGGCGGCCACATTCTGCGCGGCGCATGCGCAGCTGA
TTGGCGTTGCGGAGCGCAAGGACTTGTCACTGTTCGACGCgcgcgtgggc
gagaatcaaggctgcgtggcgcggagcagcgtggcgcACGGAAAGCTGCT
TTGCATGGATGCTTCTCAGGACGGCTCGCTGATCGCCACGGCGGGCATGG
ATCGCGTGCTGCACATGTTCGACGTGCGCATGATGTGCGTGAGGCAGCGC
TGGGCGTCGTGCCTCAAGTACGAGGTGGCGGGCGCGCTGCTGAGCCGTAG
CATGCACGGCATGGCGTATGTGTGCAGCGTGGATAACGAGGTGGCGTGCG
GCGCGTGGAGCGAGCAGATGGCGCGCCACGTGAAGACGCAGCTTGCGGCG
TCATCATCATCGTCATGCAAATCGGTGATGATCTCTGGCGCCAACACCAG
GAGCGCGCGGCGCGCGTTCGGCTTCAGAGCGGACGTGCGCGTGGTAGGAC
TAGCACGACGCAACGTCGACGACGGCGAGCAGGTGGCGGCGTTGAGCGAA
AGCGGCGCGCTGTACGTGCTACGTGCGCGCGCGGAATGA

Coding sequence (CDS) from alignment at tig00000900_pilon:435547..439085+

>Ggra2150.t1 ID=Ggra2150.t1|Name=Ggra2150.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000900_pilon:435547..439085+ (Gracilaria gracilis GNS1m male)
ATGGCCTCTGGATGGGCGCATTTCCGCAAGGTTTGGCTCAAGCCCGAAGT
GTACCCTCTAATTGGCGCCATGGGCGCTGCGCTCGGCGTCATGGCCGCGT
CGCTTGTCAACAAGGCGCGTAGTCCTACTGTCGCATGGAACAAGAGCAAA
CGGGGGACGGGCACGCTTTTCGACGACGTCGATGAGGTTgcgtcgcgcct
ggccgccacgcgcgacggcgccTTCGTGTTCGCCTCCGGCTCGCAGCTGT
TCAGCGTGCCGTGCTCGCCCGCTCTGTTTCGCAAGCGCGCGCGGAGTGAG
CGCGACGGCGAGCAACAGCGCGCTGCACGCGACGTCGTGACCAGTGCGTA
CGCGGACGATTACTTGACTGCCAGCGCCTTTTCGCGAGTTGGCGCGCACA
GACTGGCCATCCACAGCACGCACCGCGCCGAGATTCAGTCCGTGAGTGCG
GACGGCGGCACCATTGCGTCGGTGGATGCGTTTGGCAGATGTATAGTTAC
GGTTGATCAACAGCCGCCGCCGCCAGCGTCGGCGCACAAACACAACAACA
CGCGCTGCTACGTGCTGGCGCCGCCGTCGCTGGCGGGCGGCGACGGCGGC
TGGTGCGGCGTTGCGCTGCGTGCAAACGACGCGTCCGCCATCGTGGTGAG
CAGACAGATGTACCGCGACGTGACGCTGTTCGATGCGGACACGGCGGTGC
GCTCGTTCGCCACCATTGTTGCTCCGCAGGCGGCCACATTCTGCGCGGCG
CATGCGCAGCTGATTGGCGTTGCGGAGCGCAAGGACTTGTCACTGTTCGA
CGCgcgcgtgggcgagaatcaaggctgcgtggcgcggagcagcgtggcgc
ACGGAAAGCTGCTTTGCATGGATGCTTCTCAGGACGGCTCGCTGATCGCC
ACGGCGGGCATGGATCGCGTGCTGCACATGTTCGACGTGCGCATGATGTG
CGTGAGGCAGCGCTGGGCGTCGTGCCTCAAGTACGAGGTGGCGGGCGCGC
TGCTGAGCCGTAGCATGCACGGCATGGCGTATGTGTGCAGCGTGGATAAC
GAGGTGGCGTGCGGCGCGTGGAGCGAGCAGATGGCGCGCCACGTGAAGAC
GCAGCTTGCGGCGTCATCATCATCGTCATGCAAATCGGTGATGATCTCTG
GCGCCAACACCAGGAGCGCGCGGCGCGCGTTCGGCTTCAGAGCGGACGTG
CGCGTGGTAGGACTAGCACGACGCAACGTCGACGACGGCGAGCAGGTGGC
GGCGTTGAGCGAAAGCGGCGCGCTGTACGTGCTACGTGCGCGCGCGGAAT
GA