Ggra2182.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2182.t1
Unique NameGgra2182.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:572296..573405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706532.1
PFAMsIGPS
Max annot lvl2759|Eukaryota
Evalue1.54e-41
EggNOG OGsCOG0134@1|root,KOG4201@2759|Eukaryota
Descriptionindole-3-glycerol-phosphate synthase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2182Ggra2182Gracilaria gracilis GNS1m malegenetig00000900_pilon 572296..573405 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2182.t1.stop1Ggra2182.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 572296..572298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2182.t1.CDS1Ggra2182.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 572296..573405 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2182.t1.exon1Ggra2182.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 572296..573405 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2182.t1.start1Ggra2182.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 573403..573405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2182.t1Ggra2182.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 572296..573405 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2182.t1 ID=Ggra2182.t1|Name=Ggra2182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MKRCTPETEALNQNPSSLFASASPSRSLGFITSWLPVKKSSCSACQSAKI
SHSSKRKHVSRKQPISMGWKPTGLLREAVELKKLEVELMETTLQERPDHP
INMCRSFYAQECSHRFSKALRRRDRTLSIVAAIKRFHPPRPGESATKIAD
LEDIGREARALSVTGVDAALVFTDMLRYGVQTGELSRITGVLRTSNVDLG
MPIARQDLIIDAVQIAEAAVSGAAAVNIIAGAALPELMELMNAATAMGIE
SIIECHTELERDFAMECGATILYLTNWDRSRNILVPGTAERLIDGVPPWV
LTIGGGGLVTASDCWNLLDHGFNGVVLGTTLLQTKRLRSFMAEIRSQRRE
AGDMLAGDFGAPFLDDTVE*
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spliced messenger RNA

>Ggra2182.t1 ID=Ggra2182.t1|Name=Ggra2182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000900_pilon:572296..573405- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGTTGTACTCCTGAAACAGAAGCCCTCAACCAAAACCCAAGTTC
CTTGTTTGCCTCTGCATCGCCATCTCGATCGCTGGGATTCATTACGTCGT
GGCTCCCCGTCAAGAAGAGCTCCTGCAGTGCATGCCAATCTGCGAAAATC
AGCCATTCAAGCAAGCGAAAGCATGTCAGTCGCAAGCAACCAATTTCAAT
GGGTTGGAAACCTACCGGACTGTTACGCGAAGCTGTGGAACTTAAGAAAC
TGGAGGTTGAGTTGATGGAGACCACTCTTCAAGAAAGACCAGATCATCCT
ATCAACATGTGTCGGTCTTTTTATGCACAAGAATGCTCACATCGATTCTC
GAAGGCTCTCAGGAGACGGGACAGAACACTTTCGATTGTTGCTGCTATTA
AACGGTTTCACCCTCCGCGCCCTGGTGAAAGTGCGACCAAAATTGCGGAC
TTAGAGGATATTGGACGGGAAGCAAGAGCTCTCAGCGTAACTGGTGTCGA
TGCCGCCCTCGTTTTCACGGACATGTTGCGTTATGGGGTTCAGACTGGAG
AATTGTCAAGGATTACAGGCGTTTTACGGACTTCGAATGTTGACCTTGGA
ATGCCAATTGCGAGGCAAGATCTGATAATTGATGCGGTCCAGATTGCCGA
AGCGGCAGTATCGGGTGCTGCAGCTGTTAACATAATTGCTGGGGCGGCTT
TACCGGAACTTATGGAGCTTATGAATGCTGCAACCGCAATGGGTATTGAA
TCTATTATTGAATGTCATACAGAATTGGAAAGGGACTTCGCCATGGAATG
TGGAGCAACTATTCTGTACCTTACCAACTGGGATCGTTCACGAAACATAT
TGGTTCCAGGAACTGCGGAAAGGCTGATTGATGGAGTTCCGCCTTGGGTA
CTAACTATAGGCGGTGGTGGATTAGTGACAGCAAGTGACTGTTGGAATCT
TCTTGACCACGGGTTTAATGGAGTAGTTTTGGGGACAACGTTGCTTCAGA
CAAAACGACTACGCTCGTTTATGGCAGAAATTCGTTCTCAGCGGCGAGAA
GCGGGAGATATGCTCGCTGGAGATTTTGGGGCTCCTTTCTTGGACGATAC
CGTGGAGTAG
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protein sequence of Ggra2182.t1

>Ggra2182.t1 ID=Ggra2182.t1|Name=Ggra2182.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MKRCTPETEALNQNPSSLFASASPSRSLGFITSWLPVKKSSCSACQSAKI
SHSSKRKHVSRKQPISMGWKPTGLLREAVELKKLEVELMETTLQERPDHP
INMCRSFYAQECSHRFSKALRRRDRTLSIVAAIKRFHPPRPGESATKIAD
LEDIGREARALSVTGVDAALVFTDMLRYGVQTGELSRITGVLRTSNVDLG
MPIARQDLIIDAVQIAEAAVSGAAAVNIIAGAALPELMELMNAATAMGIE
SIIECHTELERDFAMECGATILYLTNWDRSRNILVPGTAERLIDGVPPWV
LTIGGGGLVTASDCWNLLDHGFNGVVLGTTLLQTKRLRSFMAEIRSQRRE
AGDMLAGDFGAPFLDDTVE*
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mRNA from alignment at tig00000900_pilon:572296..573405-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2182.t1 ID=Ggra2182.t1|Name=Ggra2182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000900_pilon:572296..573405- (Gracilaria gracilis GNS1m male)
ATGAAACGTTGTACTCCTGAAACAGAAGCCCTCAACCAAAACCCAAGTTC
CTTGTTTGCCTCTGCATCGCCATCTCGATCGCTGGGATTCATTACGTCGT
GGCTCCCCGTCAAGAAGAGCTCCTGCAGTGCATGCCAATCTGCGAAAATC
AGCCATTCAAGCAAGCGAAAGCATGTCAGTCGCAAGCAACCAATTTCAAT
GGGTTGGAAACCTACCGGACTGTTACGCGAAGCTGTGGAACTTAAGAAAC
TGGAGGTTGAGTTGATGGAGACCACTCTTCAAGAAAGACCAGATCATCCT
ATCAACATGTGTCGGTCTTTTTATGCACAAGAATGCTCACATCGATTCTC
GAAGGCTCTCAGGAGACGGGACAGAACACTTTCGATTGTTGCTGCTATTA
AACGGTTTCACCCTCCGCGCCCTGGTGAAAGTGCGACCAAAATTGCGGAC
TTAGAGGATATTGGACGGGAAGCAAGAGCTCTCAGCGTAACTGGTGTCGA
TGCCGCCCTCGTTTTCACGGACATGTTGCGTTATGGGGTTCAGACTGGAG
AATTGTCAAGGATTACAGGCGTTTTACGGACTTCGAATGTTGACCTTGGA
ATGCCAATTGCGAGGCAAGATCTGATAATTGATGCGGTCCAGATTGCCGA
AGCGGCAGTATCGGGTGCTGCAGCTGTTAACATAATTGCTGGGGCGGCTT
TACCGGAACTTATGGAGCTTATGAATGCTGCAACCGCAATGGGTATTGAA
TCTATTATTGAATGTCATACAGAATTGGAAAGGGACTTCGCCATGGAATG
TGGAGCAACTATTCTGTACCTTACCAACTGGGATCGTTCACGAAACATAT
TGGTTCCAGGAACTGCGGAAAGGCTGATTGATGGAGTTCCGCCTTGGGTA
CTAACTATAGGCGGTGGTGGATTAGTGACAGCAAGTGACTGTTGGAATCT
TCTTGACCACGGGTTTAATGGAGTAGTTTTGGGGACAACGTTGCTTCAGA
CAAAACGACTACGCTCGTTTATGGCAGAAATTCGTTCTCAGCGGCGAGAA
GCGGGAGATATGCTCGCTGGAGATTTTGGGGCTCCTTTCTTGGACGATAC
CGTGGAGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:572296..573405-

>Ggra2182.t1 ID=Ggra2182.t1|Name=Ggra2182.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000900_pilon:572296..573405- (Gracilaria gracilis GNS1m male)
ATGAAACGTTGTACTCCTGAAACAGAAGCCCTCAACCAAAACCCAAGTTC
CTTGTTTGCCTCTGCATCGCCATCTCGATCGCTGGGATTCATTACGTCGT
GGCTCCCCGTCAAGAAGAGCTCCTGCAGTGCATGCCAATCTGCGAAAATC
AGCCATTCAAGCAAGCGAAAGCATGTCAGTCGCAAGCAACCAATTTCAAT
GGGTTGGAAACCTACCGGACTGTTACGCGAAGCTGTGGAACTTAAGAAAC
TGGAGGTTGAGTTGATGGAGACCACTCTTCAAGAAAGACCAGATCATCCT
ATCAACATGTGTCGGTCTTTTTATGCACAAGAATGCTCACATCGATTCTC
GAAGGCTCTCAGGAGACGGGACAGAACACTTTCGATTGTTGCTGCTATTA
AACGGTTTCACCCTCCGCGCCCTGGTGAAAGTGCGACCAAAATTGCGGAC
TTAGAGGATATTGGACGGGAAGCAAGAGCTCTCAGCGTAACTGGTGTCGA
TGCCGCCCTCGTTTTCACGGACATGTTGCGTTATGGGGTTCAGACTGGAG
AATTGTCAAGGATTACAGGCGTTTTACGGACTTCGAATGTTGACCTTGGA
ATGCCAATTGCGAGGCAAGATCTGATAATTGATGCGGTCCAGATTGCCGA
AGCGGCAGTATCGGGTGCTGCAGCTGTTAACATAATTGCTGGGGCGGCTT
TACCGGAACTTATGGAGCTTATGAATGCTGCAACCGCAATGGGTATTGAA
TCTATTATTGAATGTCATACAGAATTGGAAAGGGACTTCGCCATGGAATG
TGGAGCAACTATTCTGTACCTTACCAACTGGGATCGTTCACGAAACATAT
TGGTTCCAGGAACTGCGGAAAGGCTGATTGATGGAGTTCCGCCTTGGGTA
CTAACTATAGGCGGTGGTGGATTAGTGACAGCAAGTGACTGTTGGAATCT
TCTTGACCACGGGTTTAATGGAGTAGTTTTGGGGACAACGTTGCTTCAGA
CAAAACGACTACGCTCGTTTATGGCAGAAATTCGTTCTCAGCGGCGAGAA
GCGGGAGATATGCTCGCTGGAGATTTTGGGGCTCCTTTCTTGGACGATAC
CGTGGAGTAG
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