Ggra2249.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2249.t1
Unique Name	Ggra2249.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	922

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:881058..884022 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2249	Ggra2249	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 881058..884022 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1	Ggra2249.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 881058..884022 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1.start1	Ggra2249.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 881058..881060 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1.CDS1	Ggra2249.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 881058..883154 +
Ggra2249.t1.CDS2	Ggra2249.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 883277..883765 +
Ggra2249.t1.CDS3	Ggra2249.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 883843..884022 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1.exon1	Ggra2249.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 881058..883154 +
Ggra2249.t1.exon2	Ggra2249.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 883277..883765 +
Ggra2249.t1.exon3	Ggra2249.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 883843..884022 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1.intron1	Ggra2249.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 883155..883276 +
Ggra2249.t1.intron2	Ggra2249.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000900_pilon 883766..883842 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2249.t1.stop1	Ggra2249.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 884020..884022 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:881058..884022+
coding sequence from alignment at tig00000900_pilon:881058..884022+

mRNA sequence

>Ggra2249.t1 ID=Ggra2249.t1|Name=Ggra2249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=922bp
MDTDNLQKDDSRASQAGPSGTTTVPETIGLTADAISDRRSTRSHPQGRPM
TPLDNPERIGREPSLASRLRTRLDRINSQPATPTQDPVEVAPSVREDLSK
GLADVLWPQLRTLCEEHVQTLLDTRVPMVLEGMIDQRIHRLIPEVLESST
FVDAMASAIQMEVIRQVGPSALQATNQSNPSASVWQPHSEPPGVAALPAP
RRIDIQEDQMAVHPGSGREPPRQVGLMDAPPRRYQGSQQPRRPSGFGDEE
IAPLDRRSVDRRKKRSKKRDKKSRKRRDHSDDSDEDSSSDSSSSTDSDAD
EAAVRRLKPLTTTNELFQKVLDYRTYRLVDKSKRYSGSVARKVTKWAKRM
QLTLTDKFSGADPITVLRFLSQFRTACDQNGVHEGAALYLFQFFLSGQAR
DHVVAKFSGTNGPIDATDRELLRSYPEVVHYLLDTYATDDVIMDAHQDVI
SFRQSTNITESDFADQLWKKAYRCGNVFSEGRLKQHFIAGLLPAIRTHVR
NHHTDHEKLSFHQLVTYAEGYGNTYRTSRRAADIDARGRAFPLRKISKVH
MVNSSESESVGPMHSEEGDILAVSFSSVPSGAPSIPTTGTSTPSGQTAPR
YTFVQPRKDVFTRSGACFICLSTARPCDCMKFMPEDVRKNLLARRDENFQ
ARKSEGMYTRPYQKSSQSPGSNRYATPRETFRPQQVNAIDTTDVEPIPQE
SVGISSSSSSESDQPVDDWIEDLEEPSWDDQDPVCVLRKENYKVRMTIAL
RTSHARVVTSVLDTGAGPNLVHPKVLPYGWEDKVKMRKAPRITDASRRPM
AIKGIIPLFVQLGNLKVRTWFLVCPNLGVECILGTSFIDRYVKAIYPGLR
KVAFNRPPPVALTHKSGSDTTDDSDYRLGTVRILWSVDASESSEDDSAST
HPYGQWSNGPSAASALYGQSQ*

spliced messenger RNA

>Ggra2249.t1 ID=Ggra2249.t1|Name=Ggra2249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2766bp|location=Sequence derived from alignment at tig00000900_pilon:881058..884022+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggataccgataaccttcagaaagatgattctcgggcttcccaagcagg
ccccagtggaaccacgacggttcccgaaaccattggcctcacggctgatg
cgatcagtgatcgtcggagcacacgtagccatcctcagggacgcccaatg
accccccttgataaccccgaacggataggtagagagcccagtttggcctc
tcgtcttcgtacccgcttggacaggatcaattcccagccggccacgccga
cgcaggacccagtggaagtcgccccgagtgtcagggaagacctttccaaa
ggtctcgctgacgtcctttggccacagctgagaacactctgtgaagagca
tgttcagacccttttggatactcgcgtaccaatggtcttggaggggatga
ttgaccaacggattcaccgcctgatcccagaggtcttggaatcgagcacc
tttgtcgatgcaatggcctcggctatccagatggaggtcatacgccaggt
aggcccctcggcccttcaggccactaatcaaagtaatccatcggcctctg
tgtggcaaccacattccgaacctccgggagtagctgccttgccagcccct
cgccggatcgatatacaggaagaccaaatggccgtgcacccagggagtgg
aagagagcctccccggcaagtaggcctaatggatgcaccacccaggaggt
accagggatcccagcagccccgtaggcccagtggattcggcgatgaggag
atcgctccattggacagacgaagtgttgaccgtaggaagaagagaagtaa
gaagagagataagaagtcgagaaaaaggagagaccattcggacgatagcg
atgaagattccagttcggactcatcgtcttcaaccgattcggacgcggat
gaggcagctgttcgacgcctcaaaccgctgaccaccacgaacgaactttt
ccagaaagttctggattatcggacataccgcctggttgataagtccaaac
ggtattccggttcggtggcccgcaaggtcaccaagtgggccaaacggatg
cagctcacccttacggacaagttctcgggtgctgacccgatcaccgtcct
caggttcttgagtcaattccgtacggcctgcgatcagaacggcgtccacg
agggtgccgctctgtacctgtttcagtttttcctcagtggacaggcgcgt
gaccatgtggtagcgaagttttctgggactaatggcccgattgatgcgac
cgacagggagctcctcaggtcatatccggaggtggttcactacctactag
acacttatgccactgatgatgtcattatggatgcccatcaggacgtgatc
tcctttaggcagagcacgaacataaccgagtcggactttgctgaccaact
ttggaagaaggcttaccgttgtggaaatgtgttttccgaaggtcgactca
agcagcatttcatcgctgggctgcttccggccattaggacgcatgtgcgg
aatcaccacacggaccatgagaagctctccttccaccagctggtcacgta
tgccgaaggttatggcaatacctataggacgtctcgtcgggctgcggaca
tagatgccagaggcagagcctttccgttgcggaaaatctctaaagtccat
atggtcaattcctctgaaagcgagtccgttggccccatgcactcggaaga
gggagatatcctcgcggtgtctttttcttctgttccgtctggtgccccat
ctataccgaccaccggaacgagcactccatctggacagaccgcgccgagg
tacacttttgtccaaccaaggaaggacgttttcacccggtcaggggcatg
cttcatttgtctgtctacggcgagaccgtgtgactgcatgaagttcatgc
cagaggacgttcgcaagaacctgttggccagaagggatgagaacttccag
gcgaggaagtccgaaggaatgtacactcgcccataccaaaagagttcgca
gtccccagggtctaatcgatacgctacccctcgcgagacattccgtccgc
aacaggtcaacgctatcgataccaccgacgtggaaccgattcctcaggag
tcagtgggcatcagctcctcaagttcttcggagtctgaccaaccagtgga
cgattggattgaagacttggaagagccgtcatgggatgaccaggacccag
tttgtgtcctcaggaaagagaactacaaggttcgaatgaccatagcactc
cgcacctctcacgcccgagtagttacgagcgtgctggataccggtgctgg
accaaacctggtacatccaaaggtcttaccatacggttgggaagacaagg
ttaagatgaggaaggcccccaggatcacagatgcatcacgccgtcccatg
gccattaaaggaatcataccattgtttgtccaattgggcaacctaaaagt
tcgcacttggttcctagtttgtcccaatttgggcgtggaatgcatcctcg
ggacttctttcatcgaccgttacgtgaaggccatttatccgggccttcga
aaagtcgcgtttaatcgcccacctccagtggctttgactcacaaaagcgg
tagtgataccaccgatgactcagactaccgcttgggcacagtgcgaatcc
tctggtctgttgacgcttcagaatcatccgaagacgattcggcgtcaact
cacccttatggccaatggagtaatggaccttcggccgcgtcagcccttta
tggtcaatctcagtaa

protein sequence of Ggra2249.t1

>Ggra2249.t1 ID=Ggra2249.t1|Name=Ggra2249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=922bp
MDTDNLQKDDSRASQAGPSGTTTVPETIGLTADAISDRRSTRSHPQGRPM
TPLDNPERIGREPSLASRLRTRLDRINSQPATPTQDPVEVAPSVREDLSK
GLADVLWPQLRTLCEEHVQTLLDTRVPMVLEGMIDQRIHRLIPEVLESST
FVDAMASAIQMEVIRQVGPSALQATNQSNPSASVWQPHSEPPGVAALPAP
RRIDIQEDQMAVHPGSGREPPRQVGLMDAPPRRYQGSQQPRRPSGFGDEE
IAPLDRRSVDRRKKRSKKRDKKSRKRRDHSDDSDEDSSSDSSSSTDSDAD
EAAVRRLKPLTTTNELFQKVLDYRTYRLVDKSKRYSGSVARKVTKWAKRM
QLTLTDKFSGADPITVLRFLSQFRTACDQNGVHEGAALYLFQFFLSGQAR
DHVVAKFSGTNGPIDATDRELLRSYPEVVHYLLDTYATDDVIMDAHQDVI
SFRQSTNITESDFADQLWKKAYRCGNVFSEGRLKQHFIAGLLPAIRTHVR
NHHTDHEKLSFHQLVTYAEGYGNTYRTSRRAADIDARGRAFPLRKISKVH
MVNSSESESVGPMHSEEGDILAVSFSSVPSGAPSIPTTGTSTPSGQTAPR
YTFVQPRKDVFTRSGACFICLSTARPCDCMKFMPEDVRKNLLARRDENFQ
ARKSEGMYTRPYQKSSQSPGSNRYATPRETFRPQQVNAIDTTDVEPIPQE
SVGISSSSSSESDQPVDDWIEDLEEPSWDDQDPVCVLRKENYKVRMTIAL
RTSHARVVTSVLDTGAGPNLVHPKVLPYGWEDKVKMRKAPRITDASRRPM
AIKGIIPLFVQLGNLKVRTWFLVCPNLGVECILGTSFIDRYVKAIYPGLR
KVAFNRPPPVALTHKSGSDTTDDSDYRLGTVRILWSVDASESSEDDSAST
HPYGQWSNGPSAASALYGQSQ*

mRNA from alignment at tig00000900_pilon:881058..884022+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2249.t1 ID=Ggra2249.t1|Name=Ggra2249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2965bp|location=Sequence derived from alignment at tig00000900_pilon:881058..884022+ (Gracilaria gracilis GNS1m male)
atggataccgataaccttcagaaagatgattctcgggcttcccaagcagg
ccccagtggaaccacgacggttcccgaaaccattggcctcacggctgatg
cgatcagtgatcgtcggagcacacgtagccatcctcagggacgcccaatg
accccccttgataaccccgaacggataggtagagagcccagtttggcctc
tcgtcttcgtacccgcttggacaggatcaattcccagccggccacgccga
cgcaggacccagtggaagtcgccccgagtgtcagggaagacctttccaaa
ggtctcgctgacgtcctttggccacagctgagaacactctgtgaagagca
tgttcagacccttttggatactcgcgtaccaatggtcttggaggggatga
ttgaccaacggattcaccgcctgatcccagaggtcttggaatcgagcacc
tttgtcgatgcaatggcctcggctatccagatggaggtcatacgccaggt
aggcccctcggcccttcaggccactaatcaaagtaatccatcggcctctg
tgtggcaaccacattccgaacctccgggagtagctgccttgccagcccct
cgccggatcgatatacaggaagaccaaatggccgtgcacccagggagtgg
aagagagcctccccggcaagtaggcctaatggatgcaccacccaggaggt
accagggatcccagcagccccgtaggcccagtggattcggcgatgaggag
atcgctccattggacagacgaagtgttgaccgtaggaagaagagaagtaa
gaagagagataagaagtcgagaaaaaggagagaccattcggacgatagcg
atgaagattccagttcggactcatcgtcttcaaccgattcggacgcggat
gaggcagctgttcgacgcctcaaaccgctgaccaccacgaacgaactttt
ccagaaagttctggattatcggacataccgcctggttgataagtccaaac
ggtattccggttcggtggcccgcaaggtcaccaagtgggccaaacggatg
cagctcacccttacggacaagttctcgggtgctgacccgatcaccgtcct
caggttcttgagtcaattccgtacggcctgcgatcagaacggcgtccacg
agggtgccgctctgtacctgtttcagtttttcctcagtggacaggcgcgt
gaccatgtggtagcgaagttttctgggactaatggcccgattgatgcgac
cgacagggagctcctcaggtcatatccggaggtggttcactacctactag
acacttatgccactgatgatgtcattatggatgcccatcaggacgtgatc
tcctttaggcagagcacgaacataaccgagtcggactttgctgaccaact
ttggaagaaggcttaccgttgtggaaatgtgttttccgaaggtcgactca
agcagcatttcatcgctgggctgcttccggccattaggacgcatgtgcgg
aatcaccacacggaccatgagaagctctccttccaccagctggtcacgta
tgccgaaggttatggcaatacctataggacgtctcgtcgggctgcggaca
tagatgccagaggcagagcctttccgttgcggaaaatctctaaagtccat
atggtcaattcctctgaaagcgagtccgttggccccatgcactcggaaga
gggagatatcctcgcggtgtctttttcttctgttccgtctggtgccccat
ctataccgaccaccggaacgagcactccatctggacagaccgcgccgagg
tacacttttgtccaaccaaggaaggacgttttcacccggtcaggggcatg
cttcatttgtctgtctacggcgagaccgtgtgactgcatgaagttcatgc
cagaggacgttcgcaagaacctgttggccagaagggatgagaacttccag
gcgaggaagtccgaaggaatgtacactcgcccataccaaaagagttcgca
gtccccagggtctaatcgatacgctacccctcgcgagacattccgtccgc
aacaggtcaacgctatcgataccaccgacgtggaaccgattcctcaggta
caaggcgagggcgttccattggaacgtcatggagagaccgaacgggaaaa
cgagtagaggagcggaccgaggcgaaccgcccctctgaggatcctagcct
caaccccgttggaccacaggagtcagtgggcatcagctcctcaagttctt
cggagtctgaccaaccagtggacgattggattgaagacttggaagagccg
tcatgggatgaccaggacccagtttgtgtcctcaggaaagagaactacaa
ggttcgaatgaccatagcactccgcacctctcacgcccgagtagttacga
gcgtgctggataccggtgctggaccaaacctggtacatccaaaggtctta
ccatacggttgggaagacaaggttaagatgaggaaggcccccaggatcac
agatgcatcacgccgtcccatggccattaaaggaatcataccattgtttg
tccaattgggcaacctaaaagttcgcacttggttcctagtttgtcccaat
ttgggcgtggaatgcatcctcgggacttctttcatcgaccgttacgtgaa
ggccatttatccgggccttcgaaaagtcgcgtttaatcgcccacctccag
tggctttggtaggttccaaaccgggaccagacgctaacccacgacggcct
ccactggccacaaacaccgtatttaacaaggtcagactcacaaaagcggt
agtgataccaccgatgactcagactaccgcttgggcacagtgcgaatcct
ctggtctgttgacgcttcagaatcatccgaagacgattcggcgtcaactc
acccttatggccaatggagtaatggaccttcggccgcgtcagccctttat
ggtcaatctcagtaa

Coding sequence (CDS) from alignment at tig00000900_pilon:881058..884022+

>Ggra2249.t1 ID=Ggra2249.t1|Name=Ggra2249.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2766bp|location=Sequence derived from alignment at tig00000900_pilon:881058..884022+ (Gracilaria gracilis GNS1m male)
atggataccgataaccttcagaaagatgattctcgggcttcccaagcagg
ccccagtggaaccacgacggttcccgaaaccattggcctcacggctgatg
cgatcagtgatcgtcggagcacacgtagccatcctcagggacgcccaatg
accccccttgataaccccgaacggataggtagagagcccagtttggcctc
tcgtcttcgtacccgcttggacaggatcaattcccagccggccacgccga
cgcaggacccagtggaagtcgccccgagtgtcagggaagacctttccaaa
ggtctcgctgacgtcctttggccacagctgagaacactctgtgaagagca
tgttcagacccttttggatactcgcgtaccaatggtcttggaggggatga
ttgaccaacggattcaccgcctgatcccagaggtcttggaatcgagcacc
tttgtcgatgcaatggcctcggctatccagatggaggtcatacgccaggt
aggcccctcggcccttcaggccactaatcaaagtaatccatcggcctctg
tgtggcaaccacattccgaacctccgggagtagctgccttgccagcccct
cgccggatcgatatacaggaagaccaaatggccgtgcacccagggagtgg
aagagagcctccccggcaagtaggcctaatggatgcaccacccaggaggt
accagggatcccagcagccccgtaggcccagtggattcggcgatgaggag
atcgctccattggacagacgaagtgttgaccgtaggaagaagagaagtaa
gaagagagataagaagtcgagaaaaaggagagaccattcggacgatagcg
atgaagattccagttcggactcatcgtcttcaaccgattcggacgcggat
gaggcagctgttcgacgcctcaaaccgctgaccaccacgaacgaactttt
ccagaaagttctggattatcggacataccgcctggttgataagtccaaac
ggtattccggttcggtggcccgcaaggtcaccaagtgggccaaacggatg
cagctcacccttacggacaagttctcgggtgctgacccgatcaccgtcct
caggttcttgagtcaattccgtacggcctgcgatcagaacggcgtccacg
agggtgccgctctgtacctgtttcagtttttcctcagtggacaggcgcgt
gaccatgtggtagcgaagttttctgggactaatggcccgattgatgcgac
cgacagggagctcctcaggtcatatccggaggtggttcactacctactag
acacttatgccactgatgatgtcattatggatgcccatcaggacgtgatc
tcctttaggcagagcacgaacataaccgagtcggactttgctgaccaact
ttggaagaaggcttaccgttgtggaaatgtgttttccgaaggtcgactca
agcagcatttcatcgctgggctgcttccggccattaggacgcatgtgcgg
aatcaccacacggaccatgagaagctctccttccaccagctggtcacgta
tgccgaaggttatggcaatacctataggacgtctcgtcgggctgcggaca
tagatgccagaggcagagcctttccgttgcggaaaatctctaaagtccat
atggtcaattcctctgaaagcgagtccgttggccccatgcactcggaaga
gggagatatcctcgcggtgtctttttcttctgttccgtctggtgccccat
ctataccgaccaccggaacgagcactccatctggacagaccgcgccgagg
tacacttttgtccaaccaaggaaggacgttttcacccggtcaggggcatg
cttcatttgtctgtctacggcgagaccgtgtgactgcatgaagttcatgc
cagaggacgttcgcaagaacctgttggccagaagggatgagaacttccag
gcgaggaagtccgaaggaatgtacactcgcccataccaaaagagttcgca
gtccccagggtctaatcgatacgctacccctcgcgagacattccgtccgc
aacaggtcaacgctatcgataccaccgacgtggaaccgattcctcaggag
tcagtgggcatcagctcctcaagttcttcggagtctgaccaaccagtgga
cgattggattgaagacttggaagagccgtcatgggatgaccaggacccag
tttgtgtcctcaggaaagagaactacaaggttcgaatgaccatagcactc
cgcacctctcacgcccgagtagttacgagcgtgctggataccggtgctgg
accaaacctggtacatccaaaggtcttaccatacggttgggaagacaagg
ttaagatgaggaaggcccccaggatcacagatgcatcacgccgtcccatg
gccattaaaggaatcataccattgtttgtccaattgggcaacctaaaagt
tcgcacttggttcctagtttgtcccaatttgggcgtggaatgcatcctcg
ggacttctttcatcgaccgttacgtgaaggccatttatccgggccttcga
aaagtcgcgtttaatcgcccacctccagtggctttgactcacaaaagcgg
tagtgataccaccgatgactcagactaccgcttgggcacagtgcgaatcc
tctggtctgttgacgcttcagaatcatccgaagacgattcggcgtcaact
cacccttatggccaatggagtaatggaccttcggccgcgtcagcccttta
tggtcaatctcagtaa