Ggra2114.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2114.t2
Unique NameGgra2114.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:326327..327160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2114Ggra2114Gracilaria gracilis GNS1m malegenetig00000900_pilon 326327..327475 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2114.t2.stop1Ggra2114.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 326327..326329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2114.t2.CDS1Ggra2114.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 326327..327160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2114.t2.exon1Ggra2114.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 326327..327160 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2114.t2.start1Ggra2114.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 327158..327160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2114.t2Ggra2114.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 326327..327160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2114.t2 ID=Ggra2114.t2|Name=Ggra2114.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MRLDNSATTTTTTTTTTTTAATTPAASPVTPLSPPSTPPTTPPCTPANPQ
PARTWQPSPESADAQIAATLHGLSFNGVNPTSVAHLLRLRAMQTTSLEQA
HLSQQEHHKLYDQQQRDYIVALETTRTKLRQALRSRIRDAIKQRRITPDQ
LRKRSSKACSSSSKSIQSCKQVKPLVKAAAAAAAARATNASQVVQTPLSS
VSTDMSLEDRVHRLFRAHRFMLHESEKILAHMRVAYEDNMSPIESDDDMD
DDRRGGDGVPNGGGNGVSNHSVVNVAN*
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spliced messenger RNA

>Ggra2114.t2 ID=Ggra2114.t2|Name=Ggra2114.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000900_pilon:326327..327160- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGACAATAGCGCCACCACTACCACCACCACCACTACCACCAC
CACCACCGCCGCCACCACCCCGGCTGCGTCCCCCGTCACCCCGCTGTCGC
CGCCGTCCACGCCGCCGACCACGCCGCCATGCACCCCCGCCAATCCACAG
CCCGCGCGCACCTGGCAGCCCTCGCCCGAAAGCGCTGACGCTCAGATTGC
CGCCACGCTTCACGGCCTTTCGTTCAACGGCGTCAACCCCACATCCGTCG
CGCACTTGTTGCGCTTGCGCGCCATGCAGACCACCTCTTTGGAGCAGGCT
CACTTGTCTCAGCAGGAGCATCACAAGCTGTACGATCAGCAGCAGCGCGA
TTATATCGTCGCCTTGGAGACCACTCGCACCAAGCTGCGCCAAGCTCTGC
GCTCTCGAATTCGTGACGCAATTAAGCAGCGCCGTATTACTCCCGACCAG
CTACGAAAGCGTTCGTCAAAGGCTTGCTCCTCCTCCTCCAAATCTATCCA
GTCTTGTAAGCAAGTCAAACCACTTGTTAAGGCTGCCGCCGCCGCCGCCG
CCGCCCGGGCTACCAACGCCTCTCAAGTGGTACAGACGCCGTTATCGTCG
GTATCGACCGATATGTCGCTTGAAGACAGAGTTCATCGTCTTTTTAGAGC
TCATCGCTTTATGCTGCACGAGTCTGAAAAGATATTGGCGCACATGCGAG
TCGCGTACGAAGACAACATGTCTCCTATTGAATCGGATGATGATATGGAT
GATGATCGCCGTGGAGGAGACGGAGTACCGAACGGAGGCGGTAATGGAGT
CAGTAATCACAGCGTCGTTAATGTGGCCAACTAG
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protein sequence of Ggra2114.t2

>Ggra2114.t2 ID=Ggra2114.t2|Name=Ggra2114.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MRLDNSATTTTTTTTTTTTAATTPAASPVTPLSPPSTPPTTPPCTPANPQ
PARTWQPSPESADAQIAATLHGLSFNGVNPTSVAHLLRLRAMQTTSLEQA
HLSQQEHHKLYDQQQRDYIVALETTRTKLRQALRSRIRDAIKQRRITPDQ
LRKRSSKACSSSSKSIQSCKQVKPLVKAAAAAAAARATNASQVVQTPLSS
VSTDMSLEDRVHRLFRAHRFMLHESEKILAHMRVAYEDNMSPIESDDDMD
DDRRGGDGVPNGGGNGVSNHSVVNVAN*
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mRNA from alignment at tig00000900_pilon:326327..327160-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2114.t2 ID=Ggra2114.t2|Name=Ggra2114.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000900_pilon:326327..327160- (Gracilaria gracilis GNS1m male)
ATGCGTCTCGACAATAGCGCCACCACTACCACCACCACCACTACCACCAC
CACCACCGCCGCCACCACCCCGGCTGCGTCCCCCGTCACCCCGCTGTCGC
CGCCGTCCACGCCGCCGACCACGCCGCCATGCACCCCCGCCAATCCACAG
CCCGCGCGCACCTGGCAGCCCTCGCCCGAAAGCGCTGACGCTCAGATTGC
CGCCACGCTTCACGGCCTTTCGTTCAACGGCGTCAACCCCACATCCGTCG
CGCACTTGTTGCGCTTGCGCGCCATGCAGACCACCTCTTTGGAGCAGGCT
CACTTGTCTCAGCAGGAGCATCACAAGCTGTACGATCAGCAGCAGCGCGA
TTATATCGTCGCCTTGGAGACCACTCGCACCAAGCTGCGCCAAGCTCTGC
GCTCTCGAATTCGTGACGCAATTAAGCAGCGCCGTATTACTCCCGACCAG
CTACGAAAGCGTTCGTCAAAGGCTTGCTCCTCCTCCTCCAAATCTATCCA
GTCTTGTAAGCAAGTCAAACCACTTGTTAAGGCTGCCGCCGCCGCCGCCG
CCGCCCGGGCTACCAACGCCTCTCAAGTGGTACAGACGCCGTTATCGTCG
GTATCGACCGATATGTCGCTTGAAGACAGAGTTCATCGTCTTTTTAGAGC
TCATCGCTTTATGCTGCACGAGTCTGAAAAGATATTGGCGCACATGCGAG
TCGCGTACGAAGACAACATGTCTCCTATTGAATCGGATGATGATATGGAT
GATGATCGCCGTGGAGGAGACGGAGTACCGAACGGAGGCGGTAATGGAGT
CAGTAATCACAGCGTCGTTAATGTGGCCAACTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:326327..327160-

>Ggra2114.t2 ID=Ggra2114.t2|Name=Ggra2114.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000900_pilon:326327..327160- (Gracilaria gracilis GNS1m male)
ATGCGTCTCGACAATAGCGCCACCACTACCACCACCACCACTACCACCAC
CACCACCGCCGCCACCACCCCGGCTGCGTCCCCCGTCACCCCGCTGTCGC
CGCCGTCCACGCCGCCGACCACGCCGCCATGCACCCCCGCCAATCCACAG
CCCGCGCGCACCTGGCAGCCCTCGCCCGAAAGCGCTGACGCTCAGATTGC
CGCCACGCTTCACGGCCTTTCGTTCAACGGCGTCAACCCCACATCCGTCG
CGCACTTGTTGCGCTTGCGCGCCATGCAGACCACCTCTTTGGAGCAGGCT
CACTTGTCTCAGCAGGAGCATCACAAGCTGTACGATCAGCAGCAGCGCGA
TTATATCGTCGCCTTGGAGACCACTCGCACCAAGCTGCGCCAAGCTCTGC
GCTCTCGAATTCGTGACGCAATTAAGCAGCGCCGTATTACTCCCGACCAG
CTACGAAAGCGTTCGTCAAAGGCTTGCTCCTCCTCCTCCAAATCTATCCA
GTCTTGTAAGCAAGTCAAACCACTTGTTAAGGCTGCCGCCGCCGCCGCCG
CCGCCCGGGCTACCAACGCCTCTCAAGTGGTACAGACGCCGTTATCGTCG
GTATCGACCGATATGTCGCTTGAAGACAGAGTTCATCGTCTTTTTAGAGC
TCATCGCTTTATGCTGCACGAGTCTGAAAAGATATTGGCGCACATGCGAG
TCGCGTACGAAGACAACATGTCTCCTATTGAATCGGATGATGATATGGAT
GATGATCGCCGTGGAGGAGACGGAGTACCGAACGGAGGCGGTAATGGAGT
CAGTAATCACAGCGTCGTTAATGTGGCCAACTAG
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