Ggra4496.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4496.t1
Unique NameGgra4496.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:663659..665389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FVZ4
Preferred nameNIR
PFAMsNIR_SIR,NIR_SIR_ferr
Max annot lvl2759|Eukaryota
KEGG rclassRC00176
KEGG koko:K00366
KEGG ReactionR00790
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010167,GO:0016020,GO:0016491,GO:0016661,GO:0016662,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050421,GO:0050896,GO:0055114,GO:0098809,GO:1901698,GO:1901700
Evalue3.25e-217
EggNOG OGsCOG0155@1|root,KOG0560@2759|Eukaryota
EC1.7.7.1
Descriptionsulfite reductase (ferredoxin) activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4496Ggra4496Gracilaria gracilis GNS1m malegenetig00000898_pilon 663659..665389 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4496.t1.stop1Ggra4496.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 663659..663661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4496.t1.CDS1Ggra4496.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 663659..665389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4496.t1.exon1Ggra4496.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 663659..665389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4496.t1.start1Ggra4496.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 665387..665389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4496.t1Ggra4496.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 663659..665389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4496.t1 ID=Ggra4496.t1|Name=Ggra4496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=577bp
MAFVPPVAVSNAANSSFHGTCVRSTSTPALLRRPSRATVMVLEEARTGDA
HLSPEALERAKTGNKFEKLKLQKDGSAMWTEVQELAQLLKEGKTKWEDVH
KDDIDIRLKWAGLFHRRKRTPGRFMMRLKVPNGILSSSQLRYFATVLRPY
GEEGCADITTRMNIQLRGITLDDAADVCDGLYESGLTSYMSGMDNVRNMV
GSPIAGIDPLEMVDTRPLCHQINDMITNNRRGRPELTNLPRKFNIAVSGS
RDDFAHTHINDIGLVPIPHYQTGEIGFNVVIGGFFSIKRNAEAIPMDVWL
PQDDVVRFCENVLLWFRDNGDRKNRQAARLMYMVDKLGMDGFRNEIESVM
GNELQRAMKGDDSYSTPVGRRNILGVHDQKQPGLSWVGACVPAGRLNVED
IEKLANVADKYCDGEVRLTVEQNVVFPNVKNEVLQEMLKEDLFNKFSVQP
GRITGNLVSCTGAQFCGLALIETKNRAIALSEELERVVDVPKDVRIHWTG
CPNSCGQVQVADIGLMGCPAKKDGKAVEGVRVFVGGKIGEEAHLGEEIMK
GVPATSEDLVPVLADILVEQFGGTRK*
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spliced messenger RNA

>Ggra4496.t1 ID=Ggra4496.t1|Name=Ggra4496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000898_pilon:663659..665389- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTTCCTCCTGTTGCTGTCAGTAACGCAGCGAATAGTTCTTT
TCATGGTACATGCGTGCGCTCGACGTCCACGCCCGCCCTGTTAAGGCGCC
CCAGTCGCGCCACTGTTATGGTTCTAGAGGAGGCACGCACTGGCGATGCT
CATCTGTCTCCCGAGGCGTTAGAACGCGCCAAGACTGGAAACAAGTTTGA
GAAGCTCAAATTGCAGAAGGATGGCTCGGCTATGTGGACTGAAGTCCAGG
AGCTGGCACAGCTTCTGAAAGAGGGAAAAACCAAATGGGAAGATGTTCAT
AAAGATGATATCGATATTCGTCTCAAGTGGGCCGGTCTATTTCACCGACG
CAAGAGAACGCCTGGTCGTTTCATGATGAGATTAAAGGTTCCCAATGGAA
TCCTTTCTTCCTCGCAATTAAGATATTTTGCCACCGTTTTGCGTCCGTAT
GGCGAAGAGGGATGTGCCGACATTACCACTCGCATGAACATTCAGTTGAG
AGGAATCACGCTTGATGACGCCGCAGACGTGTGTGACGGTCTGTATGAAA
GCGGGTTAACCAGTTATATGAGTGGTATGGACAATGTCAGGAACATGGTG
GGCAGTCCAATCGCAGGTATTGATCCCCTGGAAATGGTTGATACCCGCCC
TCTTTGTCACCAAATCAACGACATGATCACCAATAATCGCCGAGGACGTC
CAGAACTTACCAACCTGCCTCGCAAGTTTAACATAGCTGTTTCAGGTTCT
AGGGATGATTTTGCGCATACGCACATCAATGACATAGGATTGGTGCCCAT
TCCACATTATCAAACAGGCGAGATTGGCTTTAATGTCGTGATTGGTGGAT
TCTTCTCTATCAAACGAAATGCGGAAGCGATTCCAATGGATGTATGGCTT
CCACAAGATGACGTGGTTCGTTTCTGCGAAAATGTATTGTTATGGTTCCG
TGATAATGGTGACAGGAAGAATCGACAGGCTGCTCGATTGATGTACATGG
TTGATAAGCTTGGTATGGACGGATTCCGAAATGAGATTGAAAGCGTGATG
GGCAATGAATTGCAGCGCGCTATGAAAGGAGATGATTCATACTCCACACC
CGTTGGGAGACGGAATATTTTAGGTGTGCATGACCAAAAACAGCCAGGGC
TTAGCTGGGTAGGTGCTTGTGTCCCTGCCGGCAGATTGAATGTAGAGGAT
ATCGAGAAGCTTGCGAATGTGGCTGATAAGTATTGTGATGGAGAAGTTCG
TCTCACCGTGGAACAGAATGTAGTATTTCCAAACGTGAAGAATGAGGTGT
TGCAGGAAATGTTGAAGGAAGATTTGTTCAACAAATTCTCTGTACAACCG
GGTCGTATCACCGGAAATTTAGTGTCTTGCACTGGAGCGCAATTCTGTGG
TCTTGCTCTTATTGAAACCAAGAACCGAGCAATTGCGCTTTCGGAGGAAC
TGGAACGTGTTGTTGATGTTCCGAAAGATGTGAGGATTCATTGGACAGGC
TGCCCTAACAGTTGTGGACAGGTTCAGGTTGCTGATATTGGCCTCATGGG
ATGTCCCGCTAAGAAGGATGGTAAGGCTGTGGAAGGTGTGCGTGTTTTCG
TTGGAGGAAAGATTGGAGAAGAAGCTCATCTTGGAGAAGAGATTATGAAG
GGTGTGCCGGCTACTAGCGAGGACCTCGTGCCAGTCTTGGCAGACATTCT
AGTAGAGCAGTTCGGCGGCACGCGCAAATAG
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protein sequence of Ggra4496.t1

>Ggra4496.t1 ID=Ggra4496.t1|Name=Ggra4496.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=577bp
MAFVPPVAVSNAANSSFHGTCVRSTSTPALLRRPSRATVMVLEEARTGDA
HLSPEALERAKTGNKFEKLKLQKDGSAMWTEVQELAQLLKEGKTKWEDVH
KDDIDIRLKWAGLFHRRKRTPGRFMMRLKVPNGILSSSQLRYFATVLRPY
GEEGCADITTRMNIQLRGITLDDAADVCDGLYESGLTSYMSGMDNVRNMV
GSPIAGIDPLEMVDTRPLCHQINDMITNNRRGRPELTNLPRKFNIAVSGS
RDDFAHTHINDIGLVPIPHYQTGEIGFNVVIGGFFSIKRNAEAIPMDVWL
PQDDVVRFCENVLLWFRDNGDRKNRQAARLMYMVDKLGMDGFRNEIESVM
GNELQRAMKGDDSYSTPVGRRNILGVHDQKQPGLSWVGACVPAGRLNVED
IEKLANVADKYCDGEVRLTVEQNVVFPNVKNEVLQEMLKEDLFNKFSVQP
GRITGNLVSCTGAQFCGLALIETKNRAIALSEELERVVDVPKDVRIHWTG
CPNSCGQVQVADIGLMGCPAKKDGKAVEGVRVFVGGKIGEEAHLGEEIMK
GVPATSEDLVPVLADILVEQFGGTRK*
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mRNA from alignment at tig00000898_pilon:663659..665389-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4496.t1 ID=Ggra4496.t1|Name=Ggra4496.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000898_pilon:663659..665389- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTTCCTCCTGTTGCTGTCAGTAACGCAGCGAATAGTTCTTT
TCATGGTACATGCGTGCGCTCGACGTCCACGCCCGCCCTGTTAAGGCGCC
CCAGTCGCGCCACTGTTATGGTTCTAGAGGAGGCACGCACTGGCGATGCT
CATCTGTCTCCCGAGGCGTTAGAACGCGCCAAGACTGGAAACAAGTTTGA
GAAGCTCAAATTGCAGAAGGATGGCTCGGCTATGTGGACTGAAGTCCAGG
AGCTGGCACAGCTTCTGAAAGAGGGAAAAACCAAATGGGAAGATGTTCAT
AAAGATGATATCGATATTCGTCTCAAGTGGGCCGGTCTATTTCACCGACG
CAAGAGAACGCCTGGTCGTTTCATGATGAGATTAAAGGTTCCCAATGGAA
TCCTTTCTTCCTCGCAATTAAGATATTTTGCCACCGTTTTGCGTCCGTAT
GGCGAAGAGGGATGTGCCGACATTACCACTCGCATGAACATTCAGTTGAG
AGGAATCACGCTTGATGACGCCGCAGACGTGTGTGACGGTCTGTATGAAA
GCGGGTTAACCAGTTATATGAGTGGTATGGACAATGTCAGGAACATGGTG
GGCAGTCCAATCGCAGGTATTGATCCCCTGGAAATGGTTGATACCCGCCC
TCTTTGTCACCAAATCAACGACATGATCACCAATAATCGCCGAGGACGTC
CAGAACTTACCAACCTGCCTCGCAAGTTTAACATAGCTGTTTCAGGTTCT
AGGGATGATTTTGCGCATACGCACATCAATGACATAGGATTGGTGCCCAT
TCCACATTATCAAACAGGCGAGATTGGCTTTAATGTCGTGATTGGTGGAT
TCTTCTCTATCAAACGAAATGCGGAAGCGATTCCAATGGATGTATGGCTT
CCACAAGATGACGTGGTTCGTTTCTGCGAAAATGTATTGTTATGGTTCCG
TGATAATGGTGACAGGAAGAATCGACAGGCTGCTCGATTGATGTACATGG
TTGATAAGCTTGGTATGGACGGATTCCGAAATGAGATTGAAAGCGTGATG
GGCAATGAATTGCAGCGCGCTATGAAAGGAGATGATTCATACTCCACACC
CGTTGGGAGACGGAATATTTTAGGTGTGCATGACCAAAAACAGCCAGGGC
TTAGCTGGGTAGGTGCTTGTGTCCCTGCCGGCAGATTGAATGTAGAGGAT
ATCGAGAAGCTTGCGAATGTGGCTGATAAGTATTGTGATGGAGAAGTTCG
TCTCACCGTGGAACAGAATGTAGTATTTCCAAACGTGAAGAATGAGGTGT
TGCAGGAAATGTTGAAGGAAGATTTGTTCAACAAATTCTCTGTACAACCG
GGTCGTATCACCGGAAATTTAGTGTCTTGCACTGGAGCGCAATTCTGTGG
TCTTGCTCTTATTGAAACCAAGAACCGAGCAATTGCGCTTTCGGAGGAAC
TGGAACGTGTTGTTGATGTTCCGAAAGATGTGAGGATTCATTGGACAGGC
TGCCCTAACAGTTGTGGACAGGTTCAGGTTGCTGATATTGGCCTCATGGG
ATGTCCCGCTAAGAAGGATGGTAAGGCTGTGGAAGGTGTGCGTGTTTTCG
TTGGAGGAAAGATTGGAGAAGAAGCTCATCTTGGAGAAGAGATTATGAAG
GGTGTGCCGGCTACTAGCGAGGACCTCGTGCCAGTCTTGGCAGACATTCT
AGTAGAGCAGTTCGGCGGCACGCGCAAATAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:663659..665389-

>Ggra4496.t1 ID=Ggra4496.t1|Name=Ggra4496.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000898_pilon:663659..665389- (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTTCCTCCTGTTGCTGTCAGTAACGCAGCGAATAGTTCTTT
TCATGGTACATGCGTGCGCTCGACGTCCACGCCCGCCCTGTTAAGGCGCC
CCAGTCGCGCCACTGTTATGGTTCTAGAGGAGGCACGCACTGGCGATGCT
CATCTGTCTCCCGAGGCGTTAGAACGCGCCAAGACTGGAAACAAGTTTGA
GAAGCTCAAATTGCAGAAGGATGGCTCGGCTATGTGGACTGAAGTCCAGG
AGCTGGCACAGCTTCTGAAAGAGGGAAAAACCAAATGGGAAGATGTTCAT
AAAGATGATATCGATATTCGTCTCAAGTGGGCCGGTCTATTTCACCGACG
CAAGAGAACGCCTGGTCGTTTCATGATGAGATTAAAGGTTCCCAATGGAA
TCCTTTCTTCCTCGCAATTAAGATATTTTGCCACCGTTTTGCGTCCGTAT
GGCGAAGAGGGATGTGCCGACATTACCACTCGCATGAACATTCAGTTGAG
AGGAATCACGCTTGATGACGCCGCAGACGTGTGTGACGGTCTGTATGAAA
GCGGGTTAACCAGTTATATGAGTGGTATGGACAATGTCAGGAACATGGTG
GGCAGTCCAATCGCAGGTATTGATCCCCTGGAAATGGTTGATACCCGCCC
TCTTTGTCACCAAATCAACGACATGATCACCAATAATCGCCGAGGACGTC
CAGAACTTACCAACCTGCCTCGCAAGTTTAACATAGCTGTTTCAGGTTCT
AGGGATGATTTTGCGCATACGCACATCAATGACATAGGATTGGTGCCCAT
TCCACATTATCAAACAGGCGAGATTGGCTTTAATGTCGTGATTGGTGGAT
TCTTCTCTATCAAACGAAATGCGGAAGCGATTCCAATGGATGTATGGCTT
CCACAAGATGACGTGGTTCGTTTCTGCGAAAATGTATTGTTATGGTTCCG
TGATAATGGTGACAGGAAGAATCGACAGGCTGCTCGATTGATGTACATGG
TTGATAAGCTTGGTATGGACGGATTCCGAAATGAGATTGAAAGCGTGATG
GGCAATGAATTGCAGCGCGCTATGAAAGGAGATGATTCATACTCCACACC
CGTTGGGAGACGGAATATTTTAGGTGTGCATGACCAAAAACAGCCAGGGC
TTAGCTGGGTAGGTGCTTGTGTCCCTGCCGGCAGATTGAATGTAGAGGAT
ATCGAGAAGCTTGCGAATGTGGCTGATAAGTATTGTGATGGAGAAGTTCG
TCTCACCGTGGAACAGAATGTAGTATTTCCAAACGTGAAGAATGAGGTGT
TGCAGGAAATGTTGAAGGAAGATTTGTTCAACAAATTCTCTGTACAACCG
GGTCGTATCACCGGAAATTTAGTGTCTTGCACTGGAGCGCAATTCTGTGG
TCTTGCTCTTATTGAAACCAAGAACCGAGCAATTGCGCTTTCGGAGGAAC
TGGAACGTGTTGTTGATGTTCCGAAAGATGTGAGGATTCATTGGACAGGC
TGCCCTAACAGTTGTGGACAGGTTCAGGTTGCTGATATTGGCCTCATGGG
ATGTCCCGCTAAGAAGGATGGTAAGGCTGTGGAAGGTGTGCGTGTTTTCG
TTGGAGGAAAGATTGGAGAAGAAGCTCATCTTGGAGAAGAGATTATGAAG
GGTGTGCCGGCTACTAGCGAGGACCTCGTGCCAGTCTTGGCAGACATTCT
AGTAGAGCAGTTCGGCGGCACGCGCAAATAG
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